Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010509

Physical Location & Seq

Genomic Coordinates Reverse (-)

1860879 .. 1861912

Gene Structure 1034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g01770.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGAAGTTCTCCATGCTCATCTTGGTGTGCCTGCTCTCTTTACTCTTCCAGCATTCTCACTCCACCACAATACTAGTTGATGGAGTTTCAGAAGCCTTCGATCTCTGCAATTTCATTCAAGCCACTCTTCTCAGCAAACCTGACTCCACCTCCTTCACGTGGCACCCATCACGCACTGGTTTCTTCTACTTTGCCTTCAACAATGGCTCTCTGCTCAAAACATGCCAAAACACTCAAAAGCTGGCCATAACAGTCTACTCCTCCTCCGCACCGCCGCCGCAGAGTTCCGGTTCAAGTTCAAGAATCTCTCCGCAGCTTCCTCCAACCGTGGCCCCAACACCGAAATCCGGTGGTGGTGGAGTAGTTTCACCATCTCCAGTATTCCCATGGCCATTCCATCCTCGCCAAGTGGCAGTAGCTCCCAGCCCACAACCAAGCGTAAGCTCTTCAGTAACAGATAAAGGAGGCGGCGGCGGCGGCGGAATCCCATTCATTAACAGTAATCCTGCTGTTCCTTTGCCTACTGGTGAAGTGGATTCAACTACAATACGCCCTATACCAACCTCTGGCCACCAGAGACAGGTAACCATTTCCATTGTTGATTATTTTAGTTTTTGGTTACATGCTCAAACATTCAATTTGCATCAAGTAGTTGGTTATTACTTATTACTTCTTCATCAACTGAAGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

231

Amino Acids

24.69

Weight (kDa)

9.1

Isoelectric Point (pI)

49.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21090 AT1G21090
fragaria_vesca	FvH4_2g13650 FvH4_2g13650
malus_domestica	MD05G1026900.v1.1 MD10G1026200.v1.1
prunus_persica	Prupe.8G031400_v2.0.a1
pyrus_communis	pycom05g01870 pycom10g01760 pycom10g01770
rosa_chinensis	RchiOBHm_Chr6g0275291
rosa_laevigata	RLG00000013475
rosa_multiflora	Rmu_co8482861.1_g000001 Rmu_sc0005558.1_g000001
rosa_roxburghii	Rroxscaffold_7G00193430
rosa_rugosa	Rorug06G0090900
rosa_samantha	Rh6AG204500 Rh6BG207300 Rh6CG209900 Rh6DG200300
rosa_wichuraiana	Rw6G017750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	162
AccB7I	CCANNNNNTGG	1 cut(s)	566
AccI	GTMKAC	1 cut(s)	255
AcoI	YGGCCR	3 cut(s)	243, 389, 568
AcuI	CTGAAG	1 cut(s)	432
AcvI	CACGTG	1 cut(s)	159
AfiI	CCNNNNNNNGG	4 cut(s)	159, 347, 566, 580
AgsI	TTSAA	6 cut(s)	119, 199, 294, 300, 540, 637
AhlI	ACTAGT	1 cut(s)	73
AluBI	AGCT	4 cut(s)	241, 316, 419, 444
AluI	AGCT	4 cut(s)	241, 316, 419, 444
Alw26I	GTCTC	1 cut(s)	571
AoxI	GGCC	4 cut(s)	243, 330, 389, 568
ApeKI	GCWGC	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	331
AsuHPI	GGTGA	2 cut(s)	360, 539
BalI	TGGCCA	3 cut(s)	245, 391, 570
BanI	GGYRCC	1 cut(s)	162
BbrPI	CACGTG	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	4 cut(s)	74, 175, 379, 405
BcoDI	GTCTC	1 cut(s)	571
BcuI	ACTAGT	1 cut(s)	73
BfaI	CTAG	1 cut(s)	74
BisI	GCNGC	7 cut(s)	275, 278, 314, 469, 472, 475, 478
BlsI	GCNGC	7 cut(s)	276, 279, 315, 470, 473, 476, 479
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	2 cut(s)	164, 333
BmsI	GCATC	1 cut(s)	652
BpmI	CTGGAG	1 cut(s)	360
BsaAI	YACGTR	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	327, 386
BsaWI	WCCGGW	2 cut(s)	287, 347
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 248, 278
Bsc4I	CCNNNNNNNGG	4 cut(s)	159, 347, 566, 580
Bse1I	ACTGG	3 cut(s)	181, 377, 529
BseDI	CCNNGG	2 cut(s)	327, 386
BseGI	GGATG	1 cut(s)	397
BseLI	CCNNNNNNNGG	4 cut(s)	159, 347, 566, 580
BseMII	CTCAG	1 cut(s)	145
BseNI	ACTGG	3 cut(s)	181, 377, 529
BseRI	GAGGAG	2 cut(s)	250, 253
BseXI	GCAGC	1 cut(s)	325
BseYI	CCCAGC	1 cut(s)	422
BshFI	GGCC	4 cut(s)	245, 332, 391, 570
BshNI	GGYRCC	1 cut(s)	162
BsiSI	CCGG	2 cut(s)	288, 348
BslI	CCNNNNNNNGG	4 cut(s)	159, 347, 566, 580
BsmAI	GTCTC	1 cut(s)	571
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	4 cut(s)	245, 332, 391, 570
Bsp143I	GATC	1 cut(s)	100
Bsp19I	CCATGG	1 cut(s)	386
BspANI	GGCC	4 cut(s)	245, 332, 391, 570
BspCNI	CTCAG	1 cut(s)	144
BspLI	GGNNCC	2 cut(s)	164, 333
BspQI	GCTCTTC	1 cut(s)	451
BspT107I	GGYRCC	1 cut(s)	162
BsrI	ACTGG	3 cut(s)	181, 377, 529
BssECI	CCNNGG	2 cut(s)	327, 386
BssMI	GATC	1 cut(s)	100
BssT1I	CCWWGG	1 cut(s)	386
Bst4CI	ACNGT	3 cut(s)	253, 328, 500
Bst6I	CTCTTC	3 cut(s)	50, 132, 451
BstBAI	YACGTR	1 cut(s)	159
BstC8I	GCNNGC	2 cut(s)	32, 243
BstDEI	CTNAG	1 cut(s)	131
BstDSI	CCRYGG	2 cut(s)	327, 386
BstEII	GGTNACC	1 cut(s)	583
BstF5I	GGATG	1 cut(s)	397
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	571
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	2 cut(s)	474, 477
BstNSI	RCATGY	2 cut(s)	225, 626
BstPI	GGTNACC	1 cut(s)	583
BstV1I	GCAGC	1 cut(s)	325
BsuRI	GGCC	4 cut(s)	245, 332, 391, 570
BtgI	CCRYGG	2 cut(s)	327, 386
BtsCI	GGATG	1 cut(s)	397
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	2 cut(s)	32, 243
Cfr13I	GGNCC	1 cut(s)	331
CviAII	CATG	4 cut(s)	13, 222, 387, 623
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
EaeI	YGGCCR	3 cut(s)	243, 389, 568
Eam1104I	CTCTTC	3 cut(s)	50, 132, 451
EarI	CTCTTC	3 cut(s)	50, 132, 451
EciI	GGCGGA	1 cut(s)	495
Eco130I	CCWWGG	1 cut(s)	386
Eco57I	CTGAAG	1 cut(s)	432
Eco72I	CACGTG	1 cut(s)	159
Eco91I	GGTNACC	1 cut(s)	583
EcoO65I	GGTNACC	1 cut(s)	583
EcoT14I	CCWWGG	1 cut(s)	386
ErhI	CCWWGG	1 cut(s)	386
FaeI	CATG	4 cut(s)	16, 225, 390, 626
FaiI	YATR	6 cut(s)	14, 223, 248, 388, 557, 624
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FatI	CATG	4 cut(s)	12, 221, 386, 622
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	7 cut(s)	275, 278, 314, 469, 472, 475, 478
FokI	GGATG	1 cut(s)	384
Fsp4HI	GCNGC	7 cut(s)	275, 278, 314, 469, 472, 475, 478
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	7 cut(s)	275, 278, 314, 469, 472, 475, 478
GsaI	CCCAGC	1 cut(s)	426
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	4 cut(s)	245, 332, 391, 570
HapII	CCGG	2 cut(s)	288, 348
Hin1II	CATG	4 cut(s)	16, 225, 390, 626
HinfI	GANTC	4 cut(s)	143, 303, 483, 536
HpaII	CCGG	2 cut(s)	288, 348
HphI	GGTGA	2 cut(s)	360, 539
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	1 cut(s)	300
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	3 cut(s)	106, 163, 205
HpyCH4III	ACNGT	3 cut(s)	253, 328, 500
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	2 cut(s)	108, 643
HpyF10VI	GCNNNNNNNGC	2 cut(s)	474, 477
HpyF3I	CTNAG	1 cut(s)	131
HpySE526I	ACGT	1 cut(s)	158
Hsp92II	CATG	4 cut(s)	16, 225, 390, 626
Kzo9I	GATC	1 cut(s)	100
LguI	GCTCTTC	1 cut(s)	451
LmnI	GCTCC	1 cut(s)	424
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	1 cut(s)	652
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	1 cut(s)	158
MaeIII	GTNAC	3 cut(s)	451, 583, 618
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	5 cut(s)	37, 119, 175, 438, 665
MlsI	TGGCCA	3 cut(s)	245, 391, 570
MluCI	AATT	2 cut(s)	109, 637
MluNI	TGGCCA	3 cut(s)	245, 391, 570
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	347
MnlI	CCTC	7 cut(s)	160, 271, 274, 330, 411, 458, 574
Mox20I	TGGCCA	3 cut(s)	245, 391, 570
MscI	TGGCCA	3 cut(s)	245, 391, 570
MseI	TTAA	2 cut(s)	495, 691
MslI	CAYNNNNRTG	1 cut(s)	23
Msp20I	TGGCCA	3 cut(s)	245, 391, 570
MspI	CCGG	2 cut(s)	288, 348
Mva1269I	GAATGC	1 cut(s)	52
MwoI	GCNNNNNNNGC	2 cut(s)	474, 477
NcoI	CCATGG	1 cut(s)	386
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	4 cut(s)	16, 225, 390, 626
NlaIV	GGNNCC	2 cut(s)	164, 333
NspI	RCATGY	2 cut(s)	225, 626
PciSI	GCTCTTC	1 cut(s)	451
PctI	GAATGC	1 cut(s)	52
PfeI	GAWTC	3 cut(s)	303, 483, 536
PflMI	CCANNNNNTGG	1 cut(s)	566
PkrI	GCNGC	7 cut(s)	276, 279, 315, 470, 473, 476, 479
PleI	GAGTC	1 cut(s)	137
PmaCI	CACGTG	1 cut(s)	159
PmlI	CACGTG	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	137
Ppu21I	YACGTR	1 cut(s)	159
PspCI	CACGTG	1 cut(s)	159
PspEI	GGTNACC	1 cut(s)	583
PspFI	CCCAGC	1 cut(s)	422
PspN4I	GGNNCC	2 cut(s)	164, 333
PspPI	GGNCC	1 cut(s)	331
RseI	CAYNNNNRTG	1 cut(s)	23
SapI	GCTCTTC	1 cut(s)	451
SaqAI	TTAA	2 cut(s)	495, 691
SatI	GCNGC	7 cut(s)	275, 278, 314, 469, 472, 475, 478
Sau3AI	GATC	1 cut(s)	100
Sau96I	GGNCC	1 cut(s)	331
SchI	GAGTC	1 cut(s)	137
SetI	ASST	9 cut(s)	142, 152, 161, 243, 318, 421, 446, 566, 585
SfaNI	GCATC	1 cut(s)	652
SmiMI	CAYNNNNRTG	1 cut(s)	23
SpeI	ACTAGT	1 cut(s)	73
Sse9I	AATT	2 cut(s)	109, 637
SspMI	CTAG	1 cut(s)	74
StyI	CCWWGG	1 cut(s)	386
TaaI	ACNGT	3 cut(s)	253, 328, 500
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	1 cut(s)	99
TasI	AATT	2 cut(s)	109, 637
TauI	GCSGC	6 cut(s)	277, 280, 471, 474, 477, 480
TfiI	GAWTC	3 cut(s)	303, 483, 536
Tru1I	TTAA	2 cut(s)	495, 691
Tru9I	TTAA	2 cut(s)	495, 691
TscAI	CASTG	1 cut(s)	181
TseI	GCWGC	1 cut(s)	313
TspDTI	ATGAA	4 cut(s)	17, 103, 481, 665
TspRI	CASTG	1 cut(s)	181
Van91I	CCANNNNNTGG	1 cut(s)	566
XceI	RCATGY	2 cut(s)	225, 626
XcmI	CCANNNNNNNNNTGG	2 cut(s)	19, 384
XmiI	GTMKAC	1 cut(s)	255
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.