AT1G21200
MYB Family

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012453
Physical Location & Seq
Forward (+)
7421148 .. 7423673
2526 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G21200.1

Sequence Viewer

Length: 1332 bp
ATGGATGGGAATTTTCCACAAGGAGGTGTAGTTCGTAGTGGAGCTTCATCTTATGGAGGATTTGATTTACAAGGTTCTATGAGAGTTCATCACCAAGACTCCATGAATCAGCAGCATCGACACAATCCTAATTCTAGACCACTTCATGAAGGTCTTCCCTTTACTATGGTTACAGGTCAAACCTGTGATCATCATCAGAATCAGAACATGTCTATGTCTGAGCAACAGAAAGCTGAAAGAGAGAAGAATTCAGTGAGTGATGATGATGAACCAAGTTTCACAGAGGAAGGTGGTGATGGTGTTCATAATGAAGCTAATAGATCAACTAAAGGATCTCCATGGCAACGAGTGAAATGGACTGATAAGATGGTGAAGTTGTTGATTACTGCTGTTTCTTATATAGGAGATGATTCGAGTATAGATAGTAGTAGTAGAAGAAAGTTTGCTGTTTTGCAGAAGAAAGGGAAGTGGAAATCTGTTTCTAAAGTTATGGCTGAGAGAGGTTATCATGTTTCGCCGCAGCAATGTGAGGATAAGTTCAATGATTTGAATAAACGGTATAAGAAGCTTAATGATATGCTTGGTAGAGGAACATCTTGTCAAGTTGTTGAGAATCCTGCGCTTTTGGATTCGATTGGTTACTTGAATGATAAAGAGAAGGATGATGTTAGGAAGATTATGAGTTCTAAACATCTTTTTTATGAAGAGATGTGTTCGTATCATAATGGGAATAGGTTGCATTTGCCTCATGACCTTGCTTTGCAGCGTTCGTTACAGTTGGCGCTTAGAAGCAGAGATGATCATGATAATGATGATTCTAGGAAACATCAAATGGAGGATCTTGATGATGAGGATCATGATGGTGATGGTGATGAACATGATGAGTATGAGGAGCAACATTATGCGTATGGAGATTGTAGGGTAAATCATTATGGAGGTGGTGGTGGTCCTTTGAAGAAGATAAGACCAAGCCTTAGCCATGAAGATGGAGATCATCCGAGTCATGTGAATTCTCTGGAGTGTAATAAAGTCTCTTTACCTCAAATACCGTTTTCTCAAGCTGATGTGAATCAAGGTGGGGCGGAGAGTGGAAGAGCAGGTTCGGTGCAGAAGCAGTGGATGGAGTCGCGGACTCTCCAGCTAGAAGAGCAGAAGCTTCAGATCCAAGTTGAATTGCTGGAATTGGAGAAACAGAGATTCAGGTGGCAGAGGTTTAGCAAGAAAAGGGATCAAGAACTCGAGAGAATGAGAATGGAGAATGAAAGGATGAAACTTGAGAATGATCGGATGGGATTGGAGTTGAAACAAAGGGAATTGGGTGTTGAATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

443

Amino Acids

50.93

Weight (kDa)

5.88

Isoelectric Point (pI)

56.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 116 - 204 3.2e-18 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21200 AT1G21200
fragaria_vesca FvH4_2g13860 FvH4_2g13860
malus_domestica MD05G1024300.v1.1 MD10G1024800.v1.1
prunus_persica Prupe.8G028500_v2.0.a1
pyrus_communis pycom05g01540 pycom10g01640
rosa_chinensis RchiOBHm_Chr6g0275551
rosa_laevigata RLG00000013457
rosa_multiflora Rmu_ssc0000162.1_g000014
rosa_roxburghii Rroxscaffold_7G00193190
rosa_rugosa Rorug06G0093900
rosa_samantha Rh6AG206400 Rh6BG209400 Rh6CG211500 Rh6DG202000
rosa_wichuraiana Rw6G017910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1330
Acc36I ACCTGC 1 cut(s) 1088
AccII CGCG 1 cut(s) 1129
AciI CCGC 3 cut(s) 518, 1082, 1129
AclWI GGATC 5 cut(s) 340, 846, 861, 1156, 1236
AcsI RAATTY 3 cut(s) 10, 247, 1009
AcuI CTGAAG 1 cut(s) 1142
AfiI CCNNNNNNNGG 1 cut(s) 23
AflIII ACRYGT 1 cut(s) 207
AgsI TTSAA 7 cut(s) 541, 550, 646, 955, 1172, 1303, 1325
AloI GAACNNNNNNTCC 2 cut(s) 15, 47
AluBI AGCT 7 cut(s) 44, 233, 314, 568, 1061, 1141, 1156
AluI AGCT 7 cut(s) 44, 233, 314, 568, 1061, 1141, 1156
Alw26I GTCTC 1 cut(s) 1036
AlwI GGATC 5 cut(s) 340, 846, 861, 1156, 1236
Ama87I CYCGRG 1 cut(s) 1238
ApeKI GCWGC 3 cut(s) 112, 520, 763
ApoI RAATTY 3 cut(s) 10, 247, 1009
Asp700I GAANNNNTTC 1 cut(s) 153
AspLEI GCGC 2 cut(s) 622, 784
AspS9I GGNCC 1 cut(s) 947
AsuHPI GGTGA 5 cut(s) 83, 305, 382, 875, 881
AvaI CYCGRG 1 cut(s) 1238
AvaII GGWCC 1 cut(s) 947
BarI GAAGNNNNNNTAC 2 cut(s) 28, 60
BbsI GAAGAC 1 cut(s) 146
BbvI GCAGC 3 cut(s) 124, 532, 775
BccI CCATC 7 cut(s) 290, 361, 854, 860, 980, 1114, 1282
BclI TGATCA 2 cut(s) 187, 799
BcoDI GTCTC 1 cut(s) 1036
BfaI CTAG 3 cut(s) 135, 819, 1142
BfoI RGCGCY 1 cut(s) 785
BfuAI ACCTGC 1 cut(s) 1088
BisI GCNGC 4 cut(s) 113, 518, 521, 764
BlsI GCNGC 4 cut(s) 114, 519, 522, 765
Bme18I GGWCC 1 cut(s) 947
BmeT110I CYCGRG 1 cut(s) 1238
BmgT120I GGNCC 1 cut(s) 947
BmsI GCATC 1 cut(s) 124
BpiI GAAGAC 1 cut(s) 146
BpmI CTGGAG 2 cut(s) 1037, 1121
Bpu10I CCTNAGC 1 cut(s) 974
BpuEI CTTGAG 2 cut(s) 1041, 1295
BsaBI GATNNNNATC 4 cut(s) 192, 852, 990, 1068
BsaJI CCNNGG 1 cut(s) 338
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 83, 113
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse3DI GCAATG 1 cut(s) 530
Bse8I GATNNNNATC 4 cut(s) 192, 852, 990, 1068
BseDI CCNNGG 1 cut(s) 338
BseGI GGATG 6 cut(s) 10, 667, 994, 1125, 1272, 1293
BseJI GATNNNNATC 4 cut(s) 192, 852, 990, 1068
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMI GCAATG 1 cut(s) 530
BseMII CTCAG 2 cut(s) 210, 486
BseRI GAGGAG 1 cut(s) 905
BseXI GCAGC 3 cut(s) 124, 532, 775
BsgI GTGCAG 1 cut(s) 1127
Bsh1236I CGCG 1 cut(s) 1129
BsiHKCI CYCGRG 1 cut(s) 1238
BslI CCNNNNNNNGG 1 cut(s) 23
BsmAI GTCTC 1 cut(s) 1036
BsoBI CYCGRG 1 cut(s) 1238
Bsp19I CCATGG 1 cut(s) 338
BspACI CCGC 3 cut(s) 518, 1082, 1129
BspCNI CTCAG 2 cut(s) 211, 487
BspFNI CGCG 1 cut(s) 1129
BspHI TCATGA 4 cut(s) 145, 748, 802, 856
BspMI ACCTGC 1 cut(s) 1088
BspPI GGATC 5 cut(s) 340, 846, 861, 1156, 1236
BspQI GCTCTTC 2 cut(s) 1087, 1140
BsrDI GCAATG 1 cut(s) 530
BssECI CCNNGG 1 cut(s) 338
BssT1I CCWWGG 1 cut(s) 338
Bst4CI ACNGT 3 cut(s) 558, 777, 1050
Bst6I CTCTTC 3 cut(s) 699, 1087, 1140
BstDEI CTNAG 4 cut(s) 219, 495, 785, 974
BstDSI CCRYGG 1 cut(s) 338
BstF5I GGATG 6 cut(s) 10, 667, 994, 1125, 1272, 1293
BstFNI CGCG 1 cut(s) 1129
BstH2I RGCGCY 1 cut(s) 785
BstHHI GCGC 2 cut(s) 622, 784
BstMAI GTCTC 1 cut(s) 1036
BstMWI GCNNNNNNNGC 1 cut(s) 1147
BstNSI RCATGY 1 cut(s) 211
BstUI CGCG 1 cut(s) 1129
BstV1I GCAGC 3 cut(s) 124, 532, 775
BstV2I GAAGAC 1 cut(s) 146
BstX2I RGATCY 3 cut(s) 332, 838, 1161
BstXI CCANNNNNNTGG 1 cut(s) 986
BstYI RGATCY 3 cut(s) 332, 838, 1161
BtgI CCRYGG 1 cut(s) 338
BtsCI GGATG 6 cut(s) 10, 667, 994, 1125, 1272, 1293
BtsI GCAGTG 1 cut(s) 1121
BtsIMutI CAGTG 2 cut(s) 258, 1121
BveI ACCTGC 1 cut(s) 1088
CciI TCATGA 4 cut(s) 145, 748, 802, 856
CfoI GCGC 2 cut(s) 622, 784
Cfr13I GGNCC 1 cut(s) 947
DdeI CTNAG 4 cut(s) 219, 495, 785, 974
Eam1104I CTCTTC 3 cut(s) 699, 1087, 1140
EarI CTCTTC 3 cut(s) 699, 1087, 1140
EciI GGCGGA 1 cut(s) 1097
Eco130I CCWWGG 1 cut(s) 338
Eco47I GGWCC 1 cut(s) 947
Eco57I CTGAAG 1 cut(s) 1142
Eco88I CYCGRG 1 cut(s) 1238
EcoRI GAATTC 2 cut(s) 247, 1009
EcoT14I CCWWGG 1 cut(s) 338
ErhI CCWWGG 1 cut(s) 338
FbaI TGATCA 2 cut(s) 187, 799
Fnu4HI GCNGC 4 cut(s) 113, 518, 521, 764
FokI GGATG 6 cut(s) 17, 674, 981, 1132, 1279, 1300
Fsp4HI GCNGC 4 cut(s) 113, 518, 521, 764
FspBI CTAG 3 cut(s) 135, 819, 1142
GlaI GCGC 2 cut(s) 621, 783
GluI GCNGC 4 cut(s) 113, 518, 521, 764
GsuI CTGGAG 2 cut(s) 1037, 1121
HaeII RGCGCY 1 cut(s) 785
HhaI GCGC 2 cut(s) 622, 784
Hin6I GCGC 2 cut(s) 620, 782
HinP1I GCGC 2 cut(s) 620, 782
HindIII AAGCTT 2 cut(s) 566, 1154
HphI GGTGA 5 cut(s) 83, 305, 382, 875, 881
Hpy188I TCNGA 6 cut(s) 198, 204, 220, 999, 1161, 1287
Hpy188III TCNNGA 9 cut(s) 135, 146, 749, 803, 842, 857, 1016, 1232, 1240
HpyAV CCTTC 3 cut(s) 143, 281, 652
HpyCH4III ACNGT 3 cut(s) 558, 777, 1050
HpyCH4V TGCA 4 cut(s) 454, 739, 763, 1108
HpyF10VI GCNNNNNNNGC 1 cut(s) 1147
HpyF3I CTNAG 4 cut(s) 219, 495, 785, 974
HspAI GCGC 2 cut(s) 620, 782
Ksp22I TGATCA 2 cut(s) 187, 799
LguI GCTCTTC 2 cut(s) 1087, 1140
LmnI GCTCC 2 cut(s) 41, 892
LpnPI CCDG 8 cut(s) 159, 196, 630, 1001, 1083, 1151, 1163, 1186
Lsp1109I GCAGC 3 cut(s) 124, 532, 775
LweI GCATC 1 cut(s) 124
MaeI CTAG 3 cut(s) 135, 819, 1142
MaeIII GTNAC 3 cut(s) 169, 638, 771
MflI RGATCY 3 cut(s) 332, 838, 1161
MluCI AATT 8 cut(s) 10, 130, 247, 1009, 1172, 1181, 1313, 1325
MlyI GAGTC 4 cut(s) 92, 1009, 1126, 1133
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 1 cut(s) 570
MslI CAYNNNNRTG 4 cut(s) 212, 807, 861, 984
MvnI CGCG 1 cut(s) 1129
MwoI GCNNNNNNNGC 1 cut(s) 1147
NcoI CCATGG 1 cut(s) 338
NspI RCATGY 1 cut(s) 211
PaeR7I CTCGAG 1 cut(s) 1238
PagI TCATGA 4 cut(s) 145, 748, 802, 856
PciI ACATGT 1 cut(s) 207
PciSI GCTCTTC 2 cut(s) 1087, 1140
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 8 cut(s) 106, 199, 410, 613, 629, 815, 1069, 1197
PkrI GCNGC 4 cut(s) 114, 519, 522, 765
PleI GAGTC 4 cut(s) 92, 1008, 1126, 1132
PpsI GAGTC 4 cut(s) 92, 1008, 1126, 1132
PscI ACATGT 1 cut(s) 207
PsiI TTATAA 1 cut(s) 1330
PspPI GGNCC 1 cut(s) 947
PsuI RGATCY 3 cut(s) 332, 838, 1161
RseI CAYNNNNRTG 4 cut(s) 212, 807, 861, 984
SapI GCTCTTC 2 cut(s) 1087, 1140
SaqAI TTAA 1 cut(s) 570
SatI GCNGC 4 cut(s) 113, 518, 521, 764
Sau96I GGNCC 1 cut(s) 947
SchI GAGTC 4 cut(s) 92, 1009, 1126, 1133
SfaNI GCATC 1 cut(s) 124
Sfr274I CTCGAG 1 cut(s) 1238
SinI GGWCC 1 cut(s) 947
SlaI CTCGAG 1 cut(s) 1238
SmiMI CAYNNNNRTG 4 cut(s) 212, 807, 861, 984
SmlI CTYRAG 3 cut(s) 1056, 1238, 1274
SmoI CTYRAG 3 cut(s) 1056, 1238, 1274
Sse9I AATT 8 cut(s) 10, 130, 247, 1009, 1172, 1181, 1313, 1325
SsiI CCGC 3 cut(s) 518, 1082, 1129
SspMI CTAG 3 cut(s) 135, 819, 1142
StyI CCWWGG 1 cut(s) 338
TaaI ACNGT 3 cut(s) 558, 777, 1050
TaqI TCGA 4 cut(s) 118, 413, 632, 1239
TasI AATT 8 cut(s) 10, 130, 247, 1009, 1172, 1181, 1313, 1325
TauI GCSGC 1 cut(s) 520
TfiI GAWTC 8 cut(s) 106, 199, 410, 613, 629, 815, 1069, 1197
Tru1I TTAA 1 cut(s) 570
Tru9I TTAA 1 cut(s) 570
TscAI CASTG 2 cut(s) 258, 1121
TseI GCWGC 3 cut(s) 112, 520, 763
TspRI CASTG 2 cut(s) 258, 1121
VpaK11BI GGWCC 1 cut(s) 947
XapI RAATTY 3 cut(s) 10, 247, 1009
XbaI TCTAGA 1 cut(s) 134
XceI RCATGY 1 cut(s) 211
XhoI CTCGAG 1 cut(s) 1238
XmnI GAANNNNTTC 1 cut(s) 153
XspI CTAG 3 cut(s) 135, 819, 1142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.