pycom05g01540
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0012453
Physical Location & Seq
Forward (+)
1867552 .. 1871065
3514 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g01540.4

Sequence Viewer

Length: 1446 bp
ATGGAAGGGAATTTATCACAAGGAGGAGGAGGTATGGTTCCGGGTGGGGCTTCGTTTGGGGGGCTTGATTTGCAAGGATCAATGAGGGGTCATCACCAAACCCAACACCCACACACCATACACCATCACCTTCCTCATCCTCATCAAGGGTCGTTGGTCCACCCATCAATTCCCGAAGGTTTTCCGCTCAAAATGGGAACCATGCATCACTGTGATCAAACCATTTCCATGGTGGATTACAATAAGGGGGAGAGGGGCAAGAACTCGGCAAGTGATGAGGATGAGCCGAGTTATGCGGAAGATGGTGCTGATGGTCACCCTGAAGCTGGTAAAGGGAAGAAGGGGTCGCCATGGCAGCGTGTGAAGTGGACTGATCAGATGGTGAAGCTTCTGATTACTGCTGTGTCATATATAGGTGAGGATACAGGTTCAGATTGCGGTAGCGGGGGAAGAAGGAAATATTCTGTTGTACAGAAGAAGGGAAAGTGGAAATCTGTTTCCAAGGTCATGGCAGAAAGAAGTTATCATGTTTCTCCGCAGCAGTGTGAGGATAAATTCAATGACCTTAACAAAAGGTATAAGAAACTTAACGATATGCTCGGGAGGGGCACTTCTTGCCAGGTTGTTGAGAACCCTGCACTTTTGGATGTGATAGAGTACCTAACAGAGAAAGAAAAAGACGATGTTAGGAAAATATTAAGCTCGAAGCACTTGTTTTATGAGGAGATGTGTTCTTATCATAATGGAAATCGTTTGCATCTTCCTCACGATCCAGCCTTGCAGAAATCTTTACAAAGGGCGCTTAAAAGAGATGATCCTGACAATGATGATCTGAGAAGGGAAAATGACGAGCATGACGACTTTGAGGAAAATAATGCTTTACGTGGAGATAACAGGGGAATATACATTTCAGAGGACTCTGTAAAGAGGTTGAGACAAGGCCAGGGCCGTGAAGATTTTAACTTTGGGAGTTCTTTGAATTCCCAAGACAGTAACAAAAGTTCTTATTCTCACCCCCAGATTCTTCCCCAACCTGATATGAATCAAGTTTTACCTGATGGTACAAAAGCTGTTTGGTTACAGAAGCAGTGGGTTGAATCGCGTTCATTTCAGTTAGAAGAACAGAAGCTACAAATTCAAGTTGAGATGTTAGAATTGGAGAAGCAACGTTTGAAGTGGCAAAGATTTAGCAAGAAAAGGGACCATGAACTGGAAAAGCTGAGGTTGGAAAATGAGAGGATGAAACTTGAGAATGAGCGTATGATATTAGAATTGAAACAGAAGGAAATGGGTGCTGGATTGGGACATCTAGGCAATGTTGATTCTCTCAAATTCGGTAAGCTGCAGTGGGTTCAAGTATCACATATTGTTCGGGGGAGCTTTCTTGGAACGACTCTACCTGGATATACAGCGGTTGTAGCTGTGGGTTTTAGCCCATTATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

482

Amino Acids

54.56

Weight (kDa)

6.77

Isoelectric Point (pI)

42.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21200 AT1G21200
fragaria_vesca FvH4_2g13860 FvH4_2g13860
malus_domestica MD05G1024300.v1.1 MD10G1024800.v1.1
prunus_persica Prupe.8G028500_v2.0.a1
pyrus_communis pycom05g01540 pycom10g01640
rosa_chinensis RchiOBHm_Chr6g0275551
rosa_laevigata RLG00000013457
rosa_multiflora Rmu_ssc0000162.1_g000014
rosa_roxburghii Rroxscaffold_7G00193190
rosa_rugosa Rorug06G0093900
rosa_samantha Rh6AG206400 Rh6BG209400 Rh6CG211500 Rh6DG202000
rosa_wichuraiana Rw6G017910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1210
AccBSI CCGCTC 1 cut(s) 187
AccII CGCG 1 cut(s) 1102
AciI CCGC 6 cut(s) 185, 296, 438, 444, 536, 1412
AclI AACGTT 1 cut(s) 1168
AclWI GGATC 3 cut(s) 85, 764, 809
AcsI RAATTY 5 cut(s) 10, 554, 979, 1134, 1331
AcuI CTGAAG 1 cut(s) 342
AfaI GTAC 3 cut(s) 471, 659, 1063
AfiI CCNNNNNNNGG 3 cut(s) 146, 326, 1210
AgsI TTSAA 7 cut(s) 559, 979, 1097, 1139, 1174, 1276, 1355
AjnI CCWGG 3 cut(s) 618, 942, 1399
AloI GAACNNNNNNTCC 2 cut(s) 21, 53
AluBI AGCT 9 cut(s) 326, 388, 702, 1070, 1129, 1219, 1342, 1380, 1421
AluI AGCT 9 cut(s) 326, 388, 702, 1070, 1129, 1219, 1342, 1380, 1421
Alw26I GTCTC 1 cut(s) 928
AlwI GGATC 3 cut(s) 85, 764, 809
Ama87I CYCGRG 1 cut(s) 599
AoxI GGCC 2 cut(s) 940, 946
ApeKI GCWGC 3 cut(s) 355, 538, 1342
ApoI RAATTY 5 cut(s) 10, 554, 979, 1134, 1331
Asp700I GAANNNNTTC 1 cut(s) 180
AspLEI GCGC 1 cut(s) 802
AspS9I GGNCC 3 cut(s) 157, 946, 1201
AsuC2I CCSGG 1 cut(s) 42
AsuHPI GGTGA 6 cut(s) 86, 119, 308, 394, 428, 1004
AvaI CYCGRG 1 cut(s) 599
AvaII GGWCC 2 cut(s) 157, 1201
BaeGI GKGCMC 1 cut(s) 611
BbvCI CCTCAGC 1 cut(s) 1220
BbvI GCAGC 3 cut(s) 367, 550, 1329
BccI CCATC 6 cut(s) 132, 172, 296, 305, 373, 1052
BceAI ACGGC 1 cut(s) 933
BciT130I CCWGG 3 cut(s) 620, 944, 1401
BciVI GTATCC 1 cut(s) 415
BclI TGATCA 2 cut(s) 214, 373
BcnI CCSGG 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 928
BfaI CTAG 1 cut(s) 1310
BfmI CTRYAG 1 cut(s) 1343
BfoI RGCGCY 1 cut(s) 803
BfuI GTATCC 1 cut(s) 415
BisI GCNGC 3 cut(s) 356, 539, 1343
BlsI GCNGC 3 cut(s) 357, 540, 1344
Bme1390I CCNGG 4 cut(s) 42, 620, 944, 1401
Bme18I GGWCC 2 cut(s) 157, 1201
BmeT110I CYCGRG 1 cut(s) 599
BmgT120I GGNCC 3 cut(s) 157, 946, 1201
BmiI GGNNCC 3 cut(s) 39, 199, 1202
BmrFI CCNGG 4 cut(s) 42, 620, 944, 1401
BmsI GCATC 2 cut(s) 214, 766
Bpu10I CCTNAGC 1 cut(s) 1220
BpuEI CTTGAG 1 cut(s) 1268
BpuMI CCSGG 1 cut(s) 42
BsaAI YACGTR 1 cut(s) 884
BsaBI GATNNNNATC 1 cut(s) 1041
BsaJI CCNNGG 4 cut(s) 228, 350, 501, 943
BsaXI ACNNNNNCTCC 2 cut(s) 21, 51
Bsc4I CCNNNNNNNGG 3 cut(s) 146, 326, 1210
Bse1I ACTGG 1 cut(s) 1215
Bse3DI GCAATG 1 cut(s) 1321
Bse8I GATNNNNATC 1 cut(s) 1041
BseBI CCWGG 3 cut(s) 620, 944, 1401
BseDI CCNNGG 4 cut(s) 228, 350, 501, 943
BseGI GGATG 4 cut(s) 136, 286, 652, 1245
BseJI GATNNNNATC 1 cut(s) 1041
BseLI CCNNNNNNNGG 3 cut(s) 146, 326, 1210
BseMI GCAATG 1 cut(s) 1321
BseMII CTCAG 2 cut(s) 824, 1211
BseNI ACTGG 1 cut(s) 1215
BseRI GAGGAG 3 cut(s) 39, 42, 737
BseSI GKGCMC 1 cut(s) 611
BseXI GCAGC 3 cut(s) 367, 550, 1329
BsgI GTGCAG 1 cut(s) 621
Bsh1236I CGCG 1 cut(s) 1102
BshFI GGCC 2 cut(s) 942, 948
BsiHKCI CYCGRG 1 cut(s) 599
BsiSI CCGG 1 cut(s) 41
BslFI GGGAC 2 cut(s) 1214, 1317
BslI CCNNNNNNNGG 3 cut(s) 146, 326, 1210
BsmAI GTCTC 1 cut(s) 928
BsmFI GGGAC 2 cut(s) 1214, 1317
BsnI GGCC 2 cut(s) 942, 948
BsoBI CYCGRG 1 cut(s) 599
Bsp1286I GDGCHC 1 cut(s) 611
Bsp1407I TGTACA 1 cut(s) 469
Bsp143I GATC 6 cut(s) 77, 214, 373, 769, 814, 829
Bsp19I CCATGG 2 cut(s) 228, 350
BspACI CCGC 6 cut(s) 185, 296, 438, 444, 536, 1412
BspANI GGCC 2 cut(s) 942, 948
BspCNI CTCAG 2 cut(s) 825, 1212
BspFNI CGCG 1 cut(s) 1102
BspLI GGNNCC 3 cut(s) 39, 199, 1202
BspMAI CTGCAG 1 cut(s) 1347
BspPI GGATC 3 cut(s) 85, 764, 809
BsrBI CCGCTC 1 cut(s) 187
BsrDI GCAATG 1 cut(s) 1321
BsrGI TGTACA 1 cut(s) 469
BsrI ACTGG 1 cut(s) 1215
BssECI CCNNGG 4 cut(s) 228, 350, 501, 943
BssMI GATC 6 cut(s) 77, 214, 373, 769, 814, 829
BssT1I CCWWGG 3 cut(s) 228, 350, 501
Bst2UI CCWGG 3 cut(s) 620, 944, 1401
Bst4CI ACNGT 2 cut(s) 212, 992
BstAPI GCANNNNNTGC 1 cut(s) 615
BstAUI TGTACA 1 cut(s) 469
BstBAI YACGTR 1 cut(s) 884
BstDEI CTNAG 2 cut(s) 833, 1220
BstDSI CCRYGG 2 cut(s) 228, 350
BstEII GGTNACC 1 cut(s) 314
BstENI CCTNNNNNAGG 1 cut(s) 144
BstF5I GGATG 4 cut(s) 136, 286, 652, 1245
BstFNI CGCG 1 cut(s) 1102
BstH2I RGCGCY 1 cut(s) 803
BstHHI GCGC 1 cut(s) 802
BstKTI GATC 6 cut(s) 80, 217, 376, 772, 817, 832
BstMAI GTCTC 1 cut(s) 928
BstMBI GATC 6 cut(s) 77, 214, 373, 769, 814, 829
BstMWI GCNNNNNNNGC 4 cut(s) 70, 355, 615, 1418
BstNI CCWGG 3 cut(s) 620, 944, 1401
BstPI GGTNACC 1 cut(s) 314
BstSCI CCNGG 4 cut(s) 40, 618, 942, 1399
BstSFI CTRYAG 1 cut(s) 1343
BstSLI GKGCMC 1 cut(s) 611
BstUI CGCG 1 cut(s) 1102
BstV1I GCAGC 3 cut(s) 367, 550, 1329
BstXI CCANNNNNNTGG 2 cut(s) 229, 508
BsuI GTATCC 1 cut(s) 415
BsuRI GGCC 2 cut(s) 942, 948
BtgI CCRYGG 2 cut(s) 228, 350
BtsCI GGATG 4 cut(s) 136, 286, 652, 1245
BtsI GCAGTG 3 cut(s) 548, 1094, 1352
BtsIMutI CAGTG 4 cut(s) 208, 548, 1094, 1352
CfoI GCGC 1 cut(s) 802
Cfr13I GGNCC 3 cut(s) 157, 946, 1201
Csp6I GTAC 3 cut(s) 470, 658, 1062
CviAII CATG 7 cut(s) 202, 229, 351, 508, 527, 854, 1205
CviQI GTAC 3 cut(s) 470, 658, 1062
DdeI CTNAG 2 cut(s) 833, 1220
DpnI GATC 6 cut(s) 79, 216, 375, 771, 816, 831
DpnII GATC 6 cut(s) 77, 214, 373, 769, 814, 829
Eco130I CCWWGG 3 cut(s) 228, 350, 501
Eco47I GGWCC 2 cut(s) 157, 1201
Eco57I CTGAAG 1 cut(s) 342
Eco88I CYCGRG 1 cut(s) 599
Eco91I GGTNACC 1 cut(s) 314
EcoNI CCTNNNNNAGG 1 cut(s) 144
EcoO65I GGTNACC 1 cut(s) 314
EcoRI GAATTC 1 cut(s) 979
EcoRII CCWGG 3 cut(s) 618, 942, 1399
EcoT14I CCWWGG 3 cut(s) 228, 350, 501
EcoT22I ATGCAT 1 cut(s) 207
ErhI CCWWGG 3 cut(s) 228, 350, 501
FaeI CATG 7 cut(s) 205, 232, 354, 511, 530, 857, 1208
FaqI GGGAC 2 cut(s) 1214, 1317
FatI CATG 7 cut(s) 201, 228, 350, 507, 526, 853, 1204
FauI CCCGC 1 cut(s) 437
FbaI TGATCA 2 cut(s) 214, 373
Fnu4HI GCNGC 3 cut(s) 356, 539, 1343
FokI GGATG 4 cut(s) 123, 293, 659, 1252
Fsp4HI GCNGC 3 cut(s) 356, 539, 1343
FspBI CTAG 1 cut(s) 1310
GlaI GCGC 1 cut(s) 801
GluI GCNGC 3 cut(s) 356, 539, 1343
HaeII RGCGCY 1 cut(s) 803
HaeIII GGCC 2 cut(s) 942, 948
HapII CCGG 1 cut(s) 41
HhaI GCGC 1 cut(s) 802
Hin1II CATG 7 cut(s) 205, 232, 354, 511, 530, 857, 1208
Hin6I GCGC 1 cut(s) 800
HinP1I GCGC 1 cut(s) 800
HindIII AAGCTT 1 cut(s) 386
HinfI GANTC 6 cut(s) 917, 1021, 1042, 1097, 1322, 1393
HpaII CCGG 1 cut(s) 41
HphI GGTGA 6 cut(s) 86, 119, 308, 394, 428, 1004
Hpy166II GTNNAC 2 cut(s) 160, 369
Hpy188I TCNGA 5 cut(s) 378, 393, 433, 834, 913
Hpy188III TCNNGA 4 cut(s) 173, 601, 767, 818
Hpy8I GTNNAC 2 cut(s) 160, 369
HpyAV CCTTC 7 cut(s) 140, 170, 334, 447, 472, 831, 1276
HpyCH4III ACNGT 2 cut(s) 212, 992
HpyCH4IV ACGT 2 cut(s) 883, 1168
HpyCH4V TGCA 6 cut(s) 73, 205, 638, 757, 781, 1345
HpyF10VI GCNNNNNNNGC 4 cut(s) 70, 355, 615, 1418
HpyF3I CTNAG 2 cut(s) 833, 1220
HpySE526I ACGT 2 cut(s) 883, 1168
Hsp92II CATG 7 cut(s) 205, 232, 354, 511, 530, 857, 1208
HspAI GCGC 1 cut(s) 800
Ksp22I TGATCA 2 cut(s) 214, 373
Kzo9I GATC 6 cut(s) 77, 214, 373, 769, 814, 829
LmnI GCTCC 1 cut(s) 1377
Lsp1109I GCAGC 3 cut(s) 367, 550, 1329
LweI GCATC 2 cut(s) 214, 766
MaeI CTAG 1 cut(s) 1310
MaeII ACGT 2 cut(s) 883, 1168
MaeIII GTNAC 3 cut(s) 314, 992, 1077
MalI GATC 6 cut(s) 79, 216, 375, 771, 816, 831
MbiI CCGCTC 1 cut(s) 187
MboI GATC 6 cut(s) 77, 214, 373, 769, 814, 829
MboII GAAGA 8 cut(s) 311, 349, 462, 487, 752, 965, 1016, 1130
MhlI GDGCHC 1 cut(s) 611
MluCI AATT 8 cut(s) 10, 168, 554, 979, 1134, 1154, 1271, 1331
MlyI GAGTC 2 cut(s) 911, 1387
MmeI TCCRAC 1 cut(s) 1206
Mph1103I ATGCAT 1 cut(s) 207
MroXI GAANNNNTTC 1 cut(s) 180
MseI TTAA 5 cut(s) 567, 588, 698, 804, 960
MslI CAYNNNNRTG 3 cut(s) 210, 227, 1441
MspA1I CMGCKG 1 cut(s) 1412
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 4 cut(s) 42, 620, 944, 1401
MvaI CCWGG 3 cut(s) 620, 944, 1401
MvnI CGCG 1 cut(s) 1102
MwoI GCNNNNNNNGC 4 cut(s) 70, 355, 615, 1418
NciI CCSGG 1 cut(s) 42
NcoI CCATGG 2 cut(s) 228, 350
NdeII GATC 6 cut(s) 77, 214, 373, 769, 814, 829
NlaIII CATG 7 cut(s) 205, 232, 354, 511, 530, 857, 1208
NlaIV GGNNCC 3 cut(s) 39, 199, 1202
NmeAIII GCCGAG 2 cut(s) 245, 312
NmuCI GTSAC 1 cut(s) 314
NsiI ATGCAT 1 cut(s) 207
PcsI WCGNNNNNNNCGW 1 cut(s) 855
PdmI GAANNNNTTC 1 cut(s) 180
PfeI GAWTC 4 cut(s) 1021, 1042, 1097, 1322
PflMI CCANNNNNTGG 1 cut(s) 1210
PkrI GCNGC 3 cut(s) 357, 540, 1344
PleI GAGTC 2 cut(s) 911, 1387
PpsI GAGTC 2 cut(s) 911, 1387
Ppu21I YACGTR 1 cut(s) 884
Psp1406I AACGTT 1 cut(s) 1168
Psp6I CCWGG 3 cut(s) 618, 942, 1399
PspEI GGTNACC 1 cut(s) 314
PspGI CCWGG 3 cut(s) 618, 942, 1399
PspN4I GGNNCC 3 cut(s) 39, 199, 1202
PspPI GGNCC 3 cut(s) 157, 946, 1201
PsrI GAACNNNNNNTAC 4 cut(s) 985, 1017, 1113, 1145
PstI CTGCAG 1 cut(s) 1347
RsaI GTAC 3 cut(s) 471, 659, 1063
RsaNI GTAC 3 cut(s) 470, 658, 1062
RseI CAYNNNNRTG 3 cut(s) 210, 227, 1441
SaqAI TTAA 5 cut(s) 567, 588, 698, 804, 960
SatI GCNGC 3 cut(s) 356, 539, 1343
Sau3AI GATC 6 cut(s) 77, 214, 373, 769, 814, 829
Sau96I GGNCC 3 cut(s) 157, 946, 1201
SchI GAGTC 2 cut(s) 911, 1387
ScrFI CCNGG 4 cut(s) 42, 620, 944, 1401
SduI GDGCHC 1 cut(s) 611
SfaNI GCATC 2 cut(s) 214, 766
SfcI CTRYAG 1 cut(s) 1343
SinI GGWCC 2 cut(s) 157, 1201
SmiMI CAYNNNNRTG 3 cut(s) 210, 227, 1441
SmlI CTYRAG 1 cut(s) 1247
SmoI CTYRAG 1 cut(s) 1247
Sse9I AATT 8 cut(s) 10, 168, 554, 979, 1134, 1154, 1271, 1331
SsiI CCGC 6 cut(s) 185, 296, 438, 444, 536, 1412
SspI AATATT 2 cut(s) 461, 696
SspMI CTAG 1 cut(s) 1310
StyD4I CCNGG 4 cut(s) 40, 618, 942, 1399
StyI CCWWGG 3 cut(s) 228, 350, 501
TaaI ACNGT 2 cut(s) 212, 992
TaiI ACGT 2 cut(s) 886, 1171
TaqI TCGA 1 cut(s) 704
TasI AATT 8 cut(s) 10, 168, 554, 979, 1134, 1154, 1271, 1331
TatI WGTACW 1 cut(s) 469
TfiI GAWTC 4 cut(s) 1021, 1042, 1097, 1322
Tru1I TTAA 5 cut(s) 567, 588, 698, 804, 960
Tru9I TTAA 5 cut(s) 567, 588, 698, 804, 960
TscAI CASTG 4 cut(s) 215, 548, 1094, 1352
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 3 cut(s) 355, 538, 1342
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 4 cut(s) 1055, 1095, 1221, 1256
TspRI CASTG 4 cut(s) 215, 548, 1094, 1352
Van91I CCANNNNNTGG 1 cut(s) 1210
VpaK11BI GGWCC 2 cut(s) 157, 1201
XagI CCTNNNNNAGG 1 cut(s) 144
XapI RAATTY 5 cut(s) 10, 554, 979, 1134, 1331
XcmI CCANNNNNNNNNTGG 1 cut(s) 229
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 1 cut(s) 1310
Zsp2I ATGCAT 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.