MD05G1024300.v1.1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0012453
Physical Location & Seq
Forward (+)
3947873 .. 3952121
4249 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1024300.v1.1.491

Sequence Viewer

Length: 1347 bp
ATGGAAGGGAATTTATCACAAGGAGGAGGAGGTTTGGTTCCGGGCGGGGCTTCGTTTGGTGGGCTTGATTTGCAAGGATCAATGAGGGGTCATCACCAAACCCAACACCAACACACCATACACCATCACCTTCCTCATCCTCATCAAGGGTCGTTGGTCCACCCATCAATTCCCGAAGGTTTTCCGCTCAAAATGGGAACCATGCATCACTGTGATCAAACCATTTCCATGGTGGATTACAATAAGGGGGAGAGAGGCAAGAACTCGGCAAGTGATGAGGATGAGCCGAGTTATGCGGAAGATGGTGCTGATGGTCACCCTGAAGCTAGTAAAGGGAAGAAGGGGTCGCCATGGCAGCGTGTGAAGTGGACTGATCAGATGGTGAAGCTTCTGATTACTGCTGTGTCATATATAGGCGAGGATACAAGTTCAGATTGCGGTAGCGGGGGAAGAAGGAAATATTCTGTTGTACAGAAGAAGGGAAAGTGGAAATCTGTTTCCAAGGTCATGGCAGAAAGAAGATATCATGTTTCTCCGCAGCAGTGTGAAGATAAATTCAATGACCTTAACAAAAGGTATAAGAAACTTAACGATATGCTTGGGAGGGGCACTTCTTGCCAGGTTGTTGAGAACCCTGCGCTTTTGGATGTGATAGAGTACCTAACAGAGAAAGAAAAAGACGATGTTAGGAAAATATTAAGCTCGAAGCACTTGTTTTATGAGGAGATGTGTTCGTATCATAATGGAAATCGTTTGCATCTGCCTCACGATCCAGCCTTGCAGAAATCTTTACAAAGGGCACTTAAAAGAGATGATCCTGACAACGATGATCTGAGAAGGCACCACCATGATGATCTTGATGAAGATGATCAAGATATGGAAAATGACGAGCATGACGACTTTGAGGAAAATAATGCTTTACGTGGAGATAACAGGGGAATATACATTTCAGAGGACTCTGTAAAGAGGTTGAGACAAGGCCAGGGCCGTGAAGATTTTAACTTTGGGAGTTCTTTGAATTCCCAAGACAGTAACAAAAGTTCTTATTCTCACCCCCAGATTCTTCCCCAACCTGATATGAATCAAGTTTTACCTGATGGTACAAAAGCTGTTTGGTTACAGAAGCAGTGGGTTGAATCGCGTTCATTTCAGTTAGAAGAACAGAAGCTACAAATTCAAGTTGAGATGTTAGAATTGGAGAAGCAGCGTTTGAAGTGGCAAAGATTTAGCAAGAAAAGGGACCATGAACTGGAAAAGCTGAGGTTGGAAAATGAGAGGATGAAACTTGAGAATGAGCGTATGATATTAGAATTGAAACAGAAGGAAATGGGTGCTGGATTTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

449

Amino Acids

51.48

Weight (kDa)

6.12

Isoelectric Point (pI)

46.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 120 - 210 7.3e-17 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21200 AT1G21200
fragaria_vesca FvH4_2g13860 FvH4_2g13860
malus_domestica MD05G1024300.v1.1 MD10G1024800.v1.1
prunus_persica Prupe.8G028500_v2.0.a1
pyrus_communis pycom05g01540 pycom10g01640
rosa_chinensis RchiOBHm_Chr6g0275551
rosa_laevigata RLG00000013457
rosa_multiflora Rmu_ssc0000162.1_g000014
rosa_roxburghii Rroxscaffold_7G00193190
rosa_rugosa Rorug06G0093900
rosa_samantha Rh6AG206400 Rh6BG209400 Rh6CG211500 Rh6DG202000
rosa_wichuraiana Rw6G017910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 840
AccB7I CCANNNNNTGG 1 cut(s) 1249
AccBSI CCGCTC 1 cut(s) 187
AccII CGCG 1 cut(s) 1141
AciI CCGC 6 cut(s) 45, 185, 296, 438, 444, 536
AclWI GGATC 3 cut(s) 85, 764, 809
AcsI RAATTY 4 cut(s) 10, 554, 1018, 1173
AcuI CTGAAG 1 cut(s) 342
AfaI GTAC 3 cut(s) 471, 659, 1102
AfiI CCNNNNNNNGG 2 cut(s) 146, 1249
AgsI TTSAA 6 cut(s) 559, 1018, 1136, 1178, 1213, 1315
AjnI CCWGG 2 cut(s) 618, 981
AloI GAACNNNNNNTCC 2 cut(s) 21, 53
AluBI AGCT 6 cut(s) 326, 388, 702, 1109, 1168, 1258
AluI AGCT 6 cut(s) 326, 388, 702, 1109, 1168, 1258
Alw26I GTCTC 1 cut(s) 967
AlwI GGATC 3 cut(s) 85, 764, 809
AoxI GGCC 2 cut(s) 979, 985
ApeKI GCWGC 3 cut(s) 355, 538, 1204
ApoI RAATTY 4 cut(s) 10, 554, 1018, 1173
Asp700I GAANNNNTTC 1 cut(s) 180
AspLEI GCGC 1 cut(s) 640
AspS9I GGNCC 3 cut(s) 157, 985, 1240
AsuC2I CCSGG 1 cut(s) 42
AsuHPI GGTGA 5 cut(s) 86, 119, 308, 394, 1043
AvaII GGWCC 2 cut(s) 157, 1240
BaeGI GKGCMC 2 cut(s) 611, 802
BanI GGYRCC 1 cut(s) 840
BbvCI CCTCAGC 1 cut(s) 1259
BbvI GCAGC 3 cut(s) 367, 550, 1216
BccI CCATC 6 cut(s) 132, 172, 296, 305, 373, 1091
BceAI ACGGC 1 cut(s) 972
BciT130I CCWGG 2 cut(s) 620, 983
BciVI GTATCC 1 cut(s) 415
BclI TGATCA 3 cut(s) 214, 373, 868
BcnI CCSGG 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 967
BfaI CTAG 1 cut(s) 327
BfuI GTATCC 1 cut(s) 415
BisI GCNGC 3 cut(s) 356, 539, 1205
BlsI GCNGC 3 cut(s) 357, 540, 1206
Bme1390I CCNGG 3 cut(s) 42, 620, 983
Bme18I GGWCC 2 cut(s) 157, 1240
BmgT120I GGNCC 3 cut(s) 157, 985, 1240
BmiI GGNNCC 4 cut(s) 39, 199, 842, 1241
BmrFI CCNGG 3 cut(s) 42, 620, 983
BmsI GCATC 2 cut(s) 214, 766
Bpu10I CCTNAGC 1 cut(s) 1259
BpuEI CTTGAG 1 cut(s) 1307
BpuMI CCSGG 1 cut(s) 42
BsaAI YACGTR 1 cut(s) 923
BsaBI GATNNNNATC 1 cut(s) 1080
BsaJI CCNNGG 4 cut(s) 228, 350, 501, 982
BsaXI ACNNNNNCTCC 2 cut(s) 21, 51
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 1249
Bse1I ACTGG 1 cut(s) 1254
Bse8I GATNNNNATC 1 cut(s) 1080
BseBI CCWGG 2 cut(s) 620, 983
BseDI CCNNGG 4 cut(s) 228, 350, 501, 982
BseGI GGATG 4 cut(s) 136, 286, 652, 1284
BseJI GATNNNNATC 1 cut(s) 1080
BseLI CCNNNNNNNGG 2 cut(s) 146, 1249
BseMII CTCAG 2 cut(s) 824, 1250
BseNI ACTGG 1 cut(s) 1254
BseRI GAGGAG 3 cut(s) 39, 42, 737
BseSI GKGCMC 2 cut(s) 611, 802
BseXI GCAGC 3 cut(s) 367, 550, 1216
Bsh1236I CGCG 1 cut(s) 1141
BshFI GGCC 2 cut(s) 981, 987
BshNI GGYRCC 1 cut(s) 840
BsiSI CCGG 1 cut(s) 41
BslFI GGGAC 1 cut(s) 1253
BslI CCNNNNNNNGG 2 cut(s) 146, 1249
BsmAI GTCTC 1 cut(s) 967
BsmFI GGGAC 1 cut(s) 1253
BsnI GGCC 2 cut(s) 981, 987
Bsp1286I GDGCHC 2 cut(s) 611, 802
Bsp1407I TGTACA 1 cut(s) 469
Bsp143I GATC 8 cut(s) 77, 214, 373, 769, 814, 829, 853, 868
Bsp19I CCATGG 2 cut(s) 228, 350
BspACI CCGC 6 cut(s) 45, 185, 296, 438, 444, 536
BspANI GGCC 2 cut(s) 981, 987
BspCNI CTCAG 2 cut(s) 825, 1251
BspFNI CGCG 1 cut(s) 1141
BspLI GGNNCC 4 cut(s) 39, 199, 842, 1241
BspPI GGATC 3 cut(s) 85, 764, 809
BspT107I GGYRCC 1 cut(s) 840
BsrBI CCGCTC 1 cut(s) 187
BsrGI TGTACA 1 cut(s) 469
BsrI ACTGG 1 cut(s) 1254
BssECI CCNNGG 4 cut(s) 228, 350, 501, 982
BssMI GATC 8 cut(s) 77, 214, 373, 769, 814, 829, 853, 868
BssT1I CCWWGG 3 cut(s) 228, 350, 501
Bst2UI CCWGG 2 cut(s) 620, 983
Bst4CI ACNGT 2 cut(s) 212, 1031
BstAPI GCANNNNNTGC 1 cut(s) 615
BstAUI TGTACA 1 cut(s) 469
BstBAI YACGTR 1 cut(s) 923
BstDEI CTNAG 2 cut(s) 833, 1259
BstDSI CCRYGG 2 cut(s) 228, 350
BstEII GGTNACC 1 cut(s) 314
BstENI CCTNNNNNAGG 1 cut(s) 144
BstF5I GGATG 4 cut(s) 136, 286, 652, 1284
BstFNI CGCG 1 cut(s) 1141
BstHHI GCGC 1 cut(s) 640
BstKTI GATC 8 cut(s) 80, 217, 376, 772, 817, 832, 856, 871
BstMAI GTCTC 1 cut(s) 967
BstMBI GATC 8 cut(s) 77, 214, 373, 769, 814, 829, 853, 868
BstMWI GCNNNNNNNGC 3 cut(s) 70, 355, 615
BstNI CCWGG 2 cut(s) 620, 983
BstPI GGTNACC 1 cut(s) 314
BstSCI CCNGG 3 cut(s) 40, 618, 981
BstSLI GKGCMC 2 cut(s) 611, 802
BstUI CGCG 1 cut(s) 1141
BstV1I GCAGC 3 cut(s) 367, 550, 1216
BstXI CCANNNNNNTGG 2 cut(s) 229, 508
BsuI GTATCC 1 cut(s) 415
BsuRI GGCC 2 cut(s) 981, 987
BtgI CCRYGG 2 cut(s) 228, 350
BtsCI GGATG 4 cut(s) 136, 286, 652, 1284
BtsI GCAGTG 2 cut(s) 548, 1133
BtsIMutI CAGTG 3 cut(s) 208, 548, 1133
CfoI GCGC 1 cut(s) 640
Cfr13I GGNCC 3 cut(s) 157, 985, 1240
Csp6I GTAC 3 cut(s) 470, 658, 1101
CviAII CATG 8 cut(s) 202, 229, 351, 508, 527, 848, 893, 1244
CviQI GTAC 3 cut(s) 470, 658, 1101
DdeI CTNAG 2 cut(s) 833, 1259
DpnI GATC 8 cut(s) 79, 216, 375, 771, 816, 831, 855, 870
DpnII GATC 8 cut(s) 77, 214, 373, 769, 814, 829, 853, 868
Eco130I CCWWGG 3 cut(s) 228, 350, 501
Eco32I GATATC 1 cut(s) 524
Eco47I GGWCC 2 cut(s) 157, 1240
Eco57I CTGAAG 1 cut(s) 342
Eco91I GGTNACC 1 cut(s) 314
EcoNI CCTNNNNNAGG 1 cut(s) 144
EcoO65I GGTNACC 1 cut(s) 314
EcoRI GAATTC 1 cut(s) 1018
EcoRII CCWGG 2 cut(s) 618, 981
EcoRV GATATC 1 cut(s) 524
EcoT14I CCWWGG 3 cut(s) 228, 350, 501
EcoT22I ATGCAT 1 cut(s) 207
ErhI CCWWGG 3 cut(s) 228, 350, 501
FaeI CATG 8 cut(s) 205, 232, 354, 511, 530, 851, 896, 1247
FaqI GGGAC 1 cut(s) 1253
FatI CATG 8 cut(s) 201, 228, 350, 507, 526, 847, 892, 1243
FauI CCCGC 2 cut(s) 38, 437
FbaI TGATCA 3 cut(s) 214, 373, 868
Fnu4HI GCNGC 3 cut(s) 356, 539, 1205
FokI GGATG 4 cut(s) 123, 293, 659, 1291
Fsp4HI GCNGC 3 cut(s) 356, 539, 1205
FspBI CTAG 1 cut(s) 327
GlaI GCGC 1 cut(s) 639
GluI GCNGC 3 cut(s) 356, 539, 1205
HaeIII GGCC 2 cut(s) 981, 987
HapII CCGG 1 cut(s) 41
HhaI GCGC 1 cut(s) 640
Hin1II CATG 8 cut(s) 205, 232, 354, 511, 530, 851, 896, 1247
Hin6I GCGC 1 cut(s) 638
HinP1I GCGC 1 cut(s) 638
HindIII AAGCTT 1 cut(s) 386
HinfI GANTC 4 cut(s) 956, 1060, 1081, 1136
HpaII CCGG 1 cut(s) 41
HphI GGTGA 5 cut(s) 86, 119, 308, 394, 1043
Hpy166II GTNNAC 2 cut(s) 160, 369
Hpy188I TCNGA 5 cut(s) 378, 393, 433, 834, 952
Hpy188III TCNNGA 5 cut(s) 173, 767, 818, 857, 872
Hpy8I GTNNAC 2 cut(s) 160, 369
HpyAV CCTTC 7 cut(s) 140, 170, 334, 447, 472, 831, 1315
HpyCH4III ACNGT 2 cut(s) 212, 1031
HpyCH4IV ACGT 1 cut(s) 922
HpyCH4V TGCA 4 cut(s) 73, 205, 757, 781
HpyF10VI GCNNNNNNNGC 3 cut(s) 70, 355, 615
HpyF3I CTNAG 2 cut(s) 833, 1259
HpySE526I ACGT 1 cut(s) 922
Hsp92II CATG 8 cut(s) 205, 232, 354, 511, 530, 851, 896, 1247
HspAI GCGC 1 cut(s) 638
Ksp22I TGATCA 3 cut(s) 214, 373, 868
Kzo9I GATC 8 cut(s) 77, 214, 373, 769, 814, 829, 853, 868
Lsp1109I GCAGC 3 cut(s) 367, 550, 1216
LweI GCATC 2 cut(s) 214, 766
MaeI CTAG 1 cut(s) 327
MaeII ACGT 1 cut(s) 922
MaeIII GTNAC 3 cut(s) 314, 1031, 1116
MalI GATC 8 cut(s) 79, 216, 375, 771, 816, 831, 855, 870
MbiI CCGCTC 1 cut(s) 187
MboI GATC 8 cut(s) 77, 214, 373, 769, 814, 829, 853, 868
MhlI GDGCHC 2 cut(s) 611, 802
MluCI AATT 7 cut(s) 10, 168, 554, 1018, 1173, 1193, 1310
MlyI GAGTC 1 cut(s) 950
MmeI TCCRAC 1 cut(s) 1245
Mph1103I ATGCAT 1 cut(s) 207
MroXI GAANNNNTTC 1 cut(s) 180
MseI TTAA 6 cut(s) 567, 588, 698, 804, 999, 1345
MslI CAYNNNNRTG 4 cut(s) 210, 227, 846, 849
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 3 cut(s) 42, 620, 983
MvaI CCWGG 2 cut(s) 620, 983
MvnI CGCG 1 cut(s) 1141
MwoI GCNNNNNNNGC 3 cut(s) 70, 355, 615
NciI CCSGG 1 cut(s) 42
NcoI CCATGG 2 cut(s) 228, 350
NdeII GATC 8 cut(s) 77, 214, 373, 769, 814, 829, 853, 868
NlaIII CATG 8 cut(s) 205, 232, 354, 511, 530, 851, 896, 1247
NlaIV GGNNCC 4 cut(s) 39, 199, 842, 1241
NmeAIII GCCGAG 2 cut(s) 245, 312
NmuCI GTSAC 1 cut(s) 314
NsiI ATGCAT 1 cut(s) 207
PcsI WCGNNNNNNNCGW 1 cut(s) 894
PdmI GAANNNNTTC 1 cut(s) 180
PfeI GAWTC 3 cut(s) 1060, 1081, 1136
PflMI CCANNNNNTGG 1 cut(s) 1249
PkrI GCNGC 3 cut(s) 357, 540, 1206
PleI GAGTC 1 cut(s) 950
PpsI GAGTC 1 cut(s) 950
Ppu21I YACGTR 1 cut(s) 923
Psp6I CCWGG 2 cut(s) 618, 981
PspEI GGTNACC 1 cut(s) 314
PspGI CCWGG 2 cut(s) 618, 981
PspN4I GGNNCC 4 cut(s) 39, 199, 842, 1241
PspPI GGNCC 3 cut(s) 157, 985, 1240
PsrI GAACNNNNNNTAC 4 cut(s) 1024, 1056, 1152, 1184
RsaI GTAC 3 cut(s) 471, 659, 1102
RsaNI GTAC 3 cut(s) 470, 658, 1101
RseI CAYNNNNRTG 4 cut(s) 210, 227, 846, 849
SaqAI TTAA 6 cut(s) 567, 588, 698, 804, 999, 1345
SatI GCNGC 3 cut(s) 356, 539, 1205
Sau3AI GATC 8 cut(s) 77, 214, 373, 769, 814, 829, 853, 868
Sau96I GGNCC 3 cut(s) 157, 985, 1240
SchI GAGTC 1 cut(s) 950
ScrFI CCNGG 3 cut(s) 42, 620, 983
SduI GDGCHC 2 cut(s) 611, 802
SfaNI GCATC 2 cut(s) 214, 766
SinI GGWCC 2 cut(s) 157, 1240
SmiMI CAYNNNNRTG 4 cut(s) 210, 227, 846, 849
SmlI CTYRAG 1 cut(s) 1286
SmoI CTYRAG 1 cut(s) 1286
Sse9I AATT 7 cut(s) 10, 168, 554, 1018, 1173, 1193, 1310
SsiI CCGC 6 cut(s) 45, 185, 296, 438, 444, 536
SspI AATATT 2 cut(s) 461, 696
SspMI CTAG 1 cut(s) 327
StyD4I CCNGG 3 cut(s) 40, 618, 981
StyI CCWWGG 3 cut(s) 228, 350, 501
TaaI ACNGT 2 cut(s) 212, 1031
TaiI ACGT 1 cut(s) 925
TaqI TCGA 1 cut(s) 704
TasI AATT 7 cut(s) 10, 168, 554, 1018, 1173, 1193, 1310
TatI WGTACW 1 cut(s) 469
TfiI GAWTC 3 cut(s) 1060, 1081, 1136
Tru1I TTAA 6 cut(s) 567, 588, 698, 804, 999, 1345
Tru9I TTAA 6 cut(s) 567, 588, 698, 804, 999, 1345
TscAI CASTG 3 cut(s) 215, 548, 1133
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 3 cut(s) 355, 538, 1204
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 5 cut(s) 876, 1094, 1134, 1260, 1295
TspRI CASTG 3 cut(s) 215, 548, 1133
Van91I CCANNNNNTGG 1 cut(s) 1249
VpaK11BI GGWCC 2 cut(s) 157, 1240
XagI CCTNNNNNAGG 1 cut(s) 144
XapI RAATTY 4 cut(s) 10, 554, 1018, 1173
XcmI CCANNNNNNNNNTGG 1 cut(s) 229
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 1 cut(s) 327
Zsp2I ATGCAT 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.