FvH4_2g13860
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012453
Physical Location & Seq
Reverse (-)
12137362 .. 12141318
3957 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13860.t1

Sequence Viewer

Length: 1356 bp
ATGGATGGGCATTTGTCACAAGGAGGTAGGATTCCTGGTGGGGGAAGTTATGTTGGTCTTGATTTGCAAGGGTCAATGAGGGCTCATCATCAGACCCAACACCCACACAACCTACAACAGCAGCAGCAGCAGCAGCATCAAATTTCTCGGCAAGGATCAATGGTGCACCCCTCGATTCACGAGGGTTTTCCTGTCAAAATGGGAACTATGCATAATTGTGATCGGACCCTTTCGATGGTAGATTACAATAAGGGAGAGAAATGCAAGAACTCGATGAGTGATGAGGATGAGCCGAGTTATACGGAGGAGGGTGTTGATAGTCATATTGAAGCAAGTAGGGGGAAGAAGGGGTCTCCCTGGCAGCGTGTTAAGTGGACGGATAAGATGGTGAGGCTTCTGATAACTGCAGTATCTTATATAGGTGAGGATATTGGTTCAGATTGTGGTGGCGGGGTGAGAAGGAAGTTTTCTGCTCTACAGAAGAAGGGAAAGTGGAAATCTGTTTCCAAGGTCATGGCAGAAAGGGGTTATCATGTTTCTCCGCAGCAGTGTGAGGATAAATTCAATGACCTTAATAAAAGGTATAAGAAACTTAATGACATGCTGGGGAGGGGCACTTCTTGCCAGGTTGTTGAGAACCCTGCACTTTTGGATGTGATTGATTACTTAACAGAGAAAGAAAAAGATGATGTGAGGAAAATATTAAGTTCAAAGCACCTGTTTTATGAAGAGATGTGTTCCTATCATAATGGTAATCGGTTGCATCTGCCTCACGATCCAGCATTGCAGCATGCCTTGCAGGAGGCTCTTAGAAATAGAGATGATCATGATACTGATGATCTGAGGAGGCATCACCATGATGATCTTGATGAAGATGATCAAGATATGGAAACTGATGAGCGTGATGATTTTGAGGAAAATAATGTTTCACATGGTGAAAACAGGGGAATGTTTGGTGGGTCAGGAGACTCTGTGAAGAGGTTGAGGCAATGTCAAGGCCGTGAAGATATTAACTTTGGTGGTTTTTTGAATGCACAAGATTGTAACAAAAGTTCTTATTCTCATCCCCAAATTGCCCAAGGTGATATTAATCAAGCCTTACCTGATAGCACAAAAGCTGCTTGGTTACAGAAGCAGTGGATTGAATCGCGGTCTGTTCAGTTAGAAGAACAGAGGCTACAAATTCAAGTTGAGATGTTAGAATTGGAGAAACAGCGTCTCAAGTGGCAAAAATTTAGCAAGAAAAGGGATCGTGAACTGGAAAAGCTGAAGATGGAAAATGAGAGAATGAAGCTTGAGAATGAGCGTATGGCATTAGAATTGAAAAGGAAGGAAATGGGTGCCGGATTTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

452

Amino Acids

52.0

Weight (kDa)

6.27

Isoelectric Point (pI)

52.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 122 - 212 1.7e-17 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21200 AT1G21200
fragaria_vesca FvH4_2g13860 FvH4_2g13860
malus_domestica MD05G1024300.v1.1 MD10G1024800.v1.1
prunus_persica Prupe.8G028500_v2.0.a1
pyrus_communis pycom05g01540 pycom10g01640
rosa_chinensis RchiOBHm_Chr6g0275551
rosa_laevigata RLG00000013457
rosa_multiflora Rmu_ssc0000162.1_g000014
rosa_roxburghii Rroxscaffold_7G00193190
rosa_rugosa Rorug06G0093900
rosa_samantha Rh6AG206400 Rh6BG209400 Rh6CG211500 Rh6DG202000
rosa_wichuraiana Rw6G017910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1340
AccII CGCG 1 cut(s) 1150
AciI CCGC 3 cut(s) 450, 542, 1150
AclWI GGATC 3 cut(s) 163, 770, 1257
AcsI RAATTY 4 cut(s) 141, 560, 1182, 1232
AcuI CTGAAG 1 cut(s) 1289
AdeI CACNNNGTG 1 cut(s) 935
AfiI CCNNNNNNNGG 2 cut(s) 41, 235
AgsI TTSAA 7 cut(s) 329, 565, 711, 1030, 1145, 1187, 1324
AjnI CCWGG 3 cut(s) 34, 356, 624
AluBI AGCT 4 cut(s) 1118, 1267, 1294, 1353
AluI AGCT 4 cut(s) 1118, 1267, 1294, 1353
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 3 cut(s) 357, 960, 1223
Alw44I GTGCAC 1 cut(s) 164
AlwI GGATC 3 cut(s) 163, 770, 1257
AoxI GGCC 1 cut(s) 997
ApaLI GTGCAC 1 cut(s) 164
ApeKI GCWGC 9 cut(s) 121, 124, 127, 130, 133, 361, 544, 787, 1118
ApoI RAATTY 4 cut(s) 141, 560, 1182, 1232
AseI ATTAAT 1 cut(s) 1089
AspS9I GGNCC 1 cut(s) 225
AsuHPI GGTGA 6 cut(s) 400, 434, 466, 845, 947, 1094
AvaII GGWCC 1 cut(s) 225
BaeGI GKGCMC 2 cut(s) 168, 617
BaeI ACNNNNGTAYC 2 cut(s) 393, 426
BanI GGYRCC 1 cut(s) 1340
BanII GRGCYC 1 cut(s) 85
BauI CACGAG 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 9 cut(s) 133, 136, 139, 142, 145, 373, 556, 799, 1105
BccI CCATC 3 cut(s) 229, 379, 1267
BceAI ACGGC 1 cut(s) 984
BciT130I CCWGG 3 cut(s) 36, 358, 626
BclI TGATCA 2 cut(s) 823, 877
BcoDI GTCTC 3 cut(s) 357, 960, 1223
BfmI CTRYAG 2 cut(s) 405, 476
BisI GCNGC 9 cut(s) 122, 125, 128, 131, 134, 362, 545, 788, 1119
BlsI GCNGC 9 cut(s) 123, 126, 129, 132, 135, 363, 546, 789, 1120
Bme1390I CCNGG 3 cut(s) 36, 358, 626
Bme18I GGWCC 1 cut(s) 225
BmgT120I GGNCC 1 cut(s) 225
BmiI GGNNCC 2 cut(s) 227, 1342
BmrFI CCNGG 3 cut(s) 36, 358, 626
BmsI GCATC 3 cut(s) 145, 772, 859
BpuEI CTTGAG 2 cut(s) 1205, 1316
BsaBI GATNNNNATC 1 cut(s) 1089
BsaI GGTCTC 1 cut(s) 357
BsaJI CCNNGG 3 cut(s) 356, 507, 1078
BsaXI ACNNNNNCTCC 2 cut(s) 957, 987
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 235
Bse1I ACTGG 1 cut(s) 1263
Bse3DI GCAATG 2 cut(s) 782, 995
Bse8I GATNNNNATC 1 cut(s) 1089
BseBI CCWGG 3 cut(s) 36, 358, 626
BseDI CCNNGG 3 cut(s) 356, 507, 1078
BseGI GGATG 4 cut(s) 10, 292, 658, 1063
BseJI GATNNNNATC 1 cut(s) 1089
BseLI CCNNNNNNNGG 2 cut(s) 41, 235
BseMI GCAATG 2 cut(s) 782, 995
BseMII CTCAG 1 cut(s) 833
BseNI ACTGG 1 cut(s) 1263
BseRI GAGGAG 2 cut(s) 320, 859
BseSI GKGCMC 2 cut(s) 168, 617
BseXI GCAGC 9 cut(s) 133, 136, 139, 142, 145, 373, 556, 799, 1105
BseYI CCCAGC 1 cut(s) 604
BsgI GTGCAG 1 cut(s) 627
Bsh1236I CGCG 1 cut(s) 1150
BshFI GGCC 1 cut(s) 999
BshNI GGYRCC 1 cut(s) 1340
BsiHKAI GWGCWC 1 cut(s) 168
BsiSI CCGG 1 cut(s) 1344
BslI CCNNNNNNNGG 2 cut(s) 41, 235
BsmAI GTCTC 3 cut(s) 357, 960, 1223
BsmBI CGTCTC 1 cut(s) 1223
BsmI GAATGC 1 cut(s) 1036
BsnI GGCC 1 cut(s) 999
Bso31I GGTCTC 1 cut(s) 357
Bsp1286I GDGCHC 3 cut(s) 85, 168, 617
Bsp143I GATC 8 cut(s) 155, 220, 775, 823, 838, 862, 877, 1249
BspACI CCGC 3 cut(s) 450, 542, 1150
BspANI GGCC 1 cut(s) 999
BspCNI CTCAG 1 cut(s) 834
BspFNI CGCG 1 cut(s) 1150
BspHI TCATGA 1 cut(s) 826
BspLI GGNNCC 2 cut(s) 227, 1342
BspMAI CTGCAG 1 cut(s) 409
BspPI GGATC 3 cut(s) 163, 770, 1257
BspT107I GGYRCC 1 cut(s) 1340
BspTNI GGTCTC 1 cut(s) 357
BsrDI GCAATG 2 cut(s) 782, 995
BsrI ACTGG 1 cut(s) 1263
BssECI CCNNGG 3 cut(s) 356, 507, 1078
BssMI GATC 8 cut(s) 155, 220, 775, 823, 838, 862, 877, 1249
BssSI CACGAG 1 cut(s) 179
BssT1I CCWWGG 2 cut(s) 507, 1078
Bst2BI CACGAG 1 cut(s) 179
Bst2UI CCWGG 3 cut(s) 36, 358, 626
Bst6I CTCTTC 2 cut(s) 723, 971
BstAPI GCANNNNNTGC 2 cut(s) 621, 796
BstC8I GCNNGC 1 cut(s) 792
BstDEI CTNAG 2 cut(s) 809, 842
BstF5I GGATG 4 cut(s) 10, 292, 658, 1063
BstFNI CGCG 1 cut(s) 1150
BstKTI GATC 8 cut(s) 158, 223, 778, 826, 841, 865, 880, 1252
BstMAI GTCTC 3 cut(s) 357, 960, 1223
BstMBI GATC 8 cut(s) 155, 220, 775, 823, 838, 862, 877, 1249
BstMWI GCNNNNNNNGC 5 cut(s) 127, 130, 133, 621, 796
BstNI CCWGG 3 cut(s) 36, 358, 626
BstNSI RCATGY 2 cut(s) 604, 794
BstSCI CCNGG 3 cut(s) 34, 356, 624
BstSFI CTRYAG 2 cut(s) 405, 476
BstSLI GKGCMC 2 cut(s) 168, 617
BstUI CGCG 1 cut(s) 1150
BstV1I GCAGC 9 cut(s) 133, 136, 139, 142, 145, 373, 556, 799, 1105
BstXI CCANNNNNNTGG 1 cut(s) 514
BsuRI GGCC 1 cut(s) 999
BtsCI GGATG 4 cut(s) 10, 292, 658, 1063
BtsI GCAGTG 2 cut(s) 554, 1142
BtsIMutI CAGTG 2 cut(s) 554, 1142
Cac8I GCNNGC 1 cut(s) 792
CciI TCATGA 1 cut(s) 826
Cfr13I GGNCC 1 cut(s) 225
CseI GACGC 1 cut(s) 1205
CviAII CATG 7 cut(s) 514, 533, 601, 791, 827, 857, 932
DdeI CTNAG 2 cut(s) 809, 842
DpnI GATC 8 cut(s) 157, 222, 777, 825, 840, 864, 879, 1251
DpnII GATC 8 cut(s) 155, 220, 775, 823, 838, 862, 877, 1249
DraIII CACNNNGTG 1 cut(s) 935
Eam1104I CTCTTC 2 cut(s) 723, 971
EarI CTCTTC 2 cut(s) 723, 971
Eco130I CCWWGG 2 cut(s) 507, 1078
Eco24I GRGCYC 1 cut(s) 85
Eco31I GGTCTC 1 cut(s) 357
Eco47I GGWCC 1 cut(s) 225
Eco57I CTGAAG 1 cut(s) 1289
EcoRII CCWGG 3 cut(s) 34, 356, 624
EcoT14I CCWWGG 2 cut(s) 507, 1078
EcoT22I ATGCAT 1 cut(s) 213
EcoT38I GRGCYC 1 cut(s) 85
ErhI CCWWGG 2 cut(s) 507, 1078
Esp3I CGTCTC 1 cut(s) 1223
FaeI CATG 7 cut(s) 517, 536, 604, 794, 830, 860, 935
FatI CATG 7 cut(s) 513, 532, 600, 790, 826, 856, 931
FauI CCCGC 1 cut(s) 443
FbaI TGATCA 2 cut(s) 823, 877
Fnu4HI GCNGC 9 cut(s) 122, 125, 128, 131, 134, 362, 545, 788, 1119
FokI GGATG 4 cut(s) 17, 299, 665, 1050
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 9 cut(s) 122, 125, 128, 131, 134, 362, 545, 788, 1119
GluI GCNGC 9 cut(s) 122, 125, 128, 131, 134, 362, 545, 788, 1119
GsaI CCCAGC 1 cut(s) 608
HaeIII GGCC 1 cut(s) 999
HapII CCGG 1 cut(s) 1344
HgaI GACGC 1 cut(s) 1205
Hin1II CATG 7 cut(s) 517, 536, 604, 794, 830, 860, 935
HindIII AAGCTT 1 cut(s) 1292
HinfI GANTC 4 cut(s) 31, 175, 968, 1145
HpaII CCGG 1 cut(s) 1344
HphI GGTGA 6 cut(s) 400, 434, 466, 845, 947, 1094
Hpy166II GTNNAC 3 cut(s) 166, 375, 1256
Hpy188I TCNGA 5 cut(s) 93, 225, 399, 439, 843
Hpy188III TCNNGA 8 cut(s) 59, 179, 773, 827, 866, 881, 963, 1253
Hpy8I GTNNAC 3 cut(s) 166, 375, 1256
HpyAV CCTTC 4 cut(s) 340, 453, 478, 1324
HpyF10VI GCNNNNNNNGC 5 cut(s) 127, 130, 133, 621, 796
HpyF3I CTNAG 2 cut(s) 809, 842
Hsp92II CATG 7 cut(s) 517, 536, 604, 794, 830, 860, 935
Ksp22I TGATCA 2 cut(s) 823, 877
Kzo9I GATC 8 cut(s) 155, 220, 775, 823, 838, 862, 877, 1249
Lsp1109I GCAGC 9 cut(s) 133, 136, 139, 142, 145, 373, 556, 799, 1105
LweI GCATC 3 cut(s) 145, 772, 859
MaeIII GTNAC 3 cut(s) 15, 1043, 1125
MalI GATC 8 cut(s) 157, 222, 777, 825, 840, 864, 879, 1251
MboI GATC 8 cut(s) 155, 220, 775, 823, 838, 862, 877, 1249
MboII GAAGA 8 cut(s) 355, 493, 740, 884, 988, 1016, 1178, 1282
MhlI GDGCHC 3 cut(s) 85, 168, 617
MluCI AATT 8 cut(s) 141, 214, 560, 1071, 1182, 1202, 1232, 1319
MlyI GAGTC 1 cut(s) 962
Mph1103I ATGCAT 1 cut(s) 213
MseI TTAA 7 cut(s) 369, 573, 594, 668, 704, 1011, 1089
MslI CAYNNNNRTG 3 cut(s) 216, 855, 858
MspI CCGG 1 cut(s) 1344
MspR9I CCNGG 3 cut(s) 36, 358, 626
Mva1269I GAATGC 1 cut(s) 1036
MvaI CCWGG 3 cut(s) 36, 358, 626
MvnI CGCG 1 cut(s) 1150
MwoI GCNNNNNNNGC 5 cut(s) 127, 130, 133, 621, 796
NdeII GATC 8 cut(s) 155, 220, 775, 823, 838, 862, 877, 1249
NlaIII CATG 7 cut(s) 517, 536, 604, 794, 830, 860, 935
NlaIV GGNNCC 2 cut(s) 227, 1342
NmeAIII GCCGAG 2 cut(s) 127, 318
NmuCI GTSAC 1 cut(s) 15
NsiI ATGCAT 1 cut(s) 213
NspI RCATGY 2 cut(s) 604, 794
PaeI GCATGC 1 cut(s) 794
PagI TCATGA 1 cut(s) 826
PctI GAATGC 1 cut(s) 1036
PfeI GAWTC 3 cut(s) 31, 175, 1145
PkrI GCNGC 9 cut(s) 123, 126, 129, 132, 135, 363, 546, 789, 1120
PleI GAGTC 1 cut(s) 962
PpsI GAGTC 1 cut(s) 962
PshBI ATTAAT 1 cut(s) 1089
Psp6I CCWGG 3 cut(s) 34, 356, 624
PspFI CCCAGC 1 cut(s) 604
PspGI CCWGG 3 cut(s) 34, 356, 624
PspN4I GGNNCC 2 cut(s) 227, 1342
PspPI GGNCC 1 cut(s) 225
PsrI GAACNNNNNNTAC 4 cut(s) 1036, 1068, 1161, 1193
PstI CTGCAG 1 cut(s) 409
RseI CAYNNNNRTG 3 cut(s) 216, 855, 858
SaqAI TTAA 7 cut(s) 369, 573, 594, 668, 704, 1011, 1089
SatI GCNGC 9 cut(s) 122, 125, 128, 131, 134, 362, 545, 788, 1119
Sau3AI GATC 8 cut(s) 155, 220, 775, 823, 838, 862, 877, 1249
Sau96I GGNCC 1 cut(s) 225
SchI GAGTC 1 cut(s) 962
ScrFI CCNGG 3 cut(s) 36, 358, 626
SduI GDGCHC 3 cut(s) 85, 168, 617
SfaNI GCATC 3 cut(s) 145, 772, 859
SfcI CTRYAG 2 cut(s) 405, 476
SinI GGWCC 1 cut(s) 225
SmiMI CAYNNNNRTG 3 cut(s) 216, 855, 858
SmlI CTYRAG 2 cut(s) 1220, 1295
SmoI CTYRAG 2 cut(s) 1220, 1295
SphI GCATGC 1 cut(s) 794
Sse9I AATT 8 cut(s) 141, 214, 560, 1071, 1182, 1202, 1232, 1319
SsiI CCGC 3 cut(s) 450, 542, 1150
SspI AATATT 1 cut(s) 702
StyD4I CCNGG 3 cut(s) 34, 356, 624
StyI CCWWGG 2 cut(s) 507, 1078
TaqI TCGA 3 cut(s) 173, 233, 272
TasI AATT 8 cut(s) 141, 214, 560, 1071, 1182, 1202, 1232, 1319
TfiI GAWTC 3 cut(s) 31, 175, 1145
Tru1I TTAA 7 cut(s) 369, 573, 594, 668, 704, 1011, 1089
Tru9I TTAA 7 cut(s) 369, 573, 594, 668, 704, 1011, 1089
TscAI CASTG 2 cut(s) 554, 1142
TseFI GTSAC 1 cut(s) 15
TseI GCWGC 9 cut(s) 121, 124, 127, 130, 133, 361, 544, 787, 1118
Tsp45I GTSAC 1 cut(s) 15
TspDTI ATGAA 3 cut(s) 741, 885, 1304
TspGWI ACGGA 2 cut(s) 317, 392
TspRI CASTG 2 cut(s) 554, 1142
VneI GTGCAC 1 cut(s) 164
VpaK11BI GGWCC 1 cut(s) 225
VspI ATTAAT 1 cut(s) 1089
XapI RAATTY 4 cut(s) 141, 560, 1182, 1232
XceI RCATGY 2 cut(s) 604, 794
Zsp2I ATGCAT 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.