Rorug06G0093900
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012453
Physical Location & Seq
Reverse (-)
12468265 .. 12471064
2800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0093900.1

Sequence Viewer

Length: 1032 bp
ATGTCTTGGATTCATGATGACAAAAATGGTGTTCCAGGAACTCATGGAGCCCTCAAAATTCCCAAAGTTCAAGTCATTTCTCACAAAGCTCAGTGCTCATTGCTCCTTCCCAACACGAGGTTGAAGCAACCCCAAACGACCAAATCGCCTTCGAATTCCCTCCCCTCTTCCGACTCTACAAAGACGGACGCGCTGAACGACTTAAGGGCACCGAAACCGTCCCACCTTCTACCGACCCGACTACCGGAGTCCAATCCAAAGACATCGTCCTCTCACCCGAGTCCGGACTCGCTGCCCGCATCTACCTCCCCAAACTCTCCGACCCGACCCGGAAACTCCCTTTCCTCCTCTACATCCACGGCGGCGGCTTCGTCATCGAGTCCCCATACTCCCCTATCTACCACACCCACCTCAACTCCCTCACTGCCGAAGCAAACGTCGTCGCTTTATCCATCCACTACCGCCGCGCCCCGGAGCACCCTCTTCCCGCGGCTTTTGAAGATTCCTGGGCCGCATTTGAATGGGTCGCGGCCCATTCGAGGCGGCAACGGGCCGGAAGCCTGGCTGAACGAACACGCGGACTTTAACCGCGTGTTCGTAGCCGGAGACAGCGCCGGTGCCACTCTGGCGCACCACGTGGTGCGTCAGAGTGGAGTGGAGGGAGTTAGTGGGGTTAATATTGCGGGGGTTGTTTTGTTTCATCCGTTTTTTCGGAACGAGGGGCCGGATAAGTTGTTGGAGGTGATATATCCGACGGGCTGCGGGTCGGAGGATCTGAAAGTGTACCCGGGAAAGGATCCGAAACTGGGGAGCTTGGGAGCTGGGAGAGTGTTGGTGTTTGTGGCGGAGAAGGATTTTCTGAAGGACAGGGGATGGAGTTATTATGAGGCGTTGAAGAAGAGTGGGTGGGGTGGAGTGGTGGAGATTGAGGAGACTGAAGGAGAAGATCATGTGTTTCATTTGTTCAATCCGAGCTGTGAGAAGGCTGTGAACTTGGTGAAGAAGGTAGCTGGTTTCATGAATCAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

343

Amino Acids

36.54

Weight (kDa)

9.01

Isoelectric Point (pI)

44.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_3 PF07859 187 - 320 3.3e-18 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21200 AT1G21200
fragaria_vesca FvH4_2g13860 FvH4_2g13860
malus_domestica MD05G1024300.v1.1 MD10G1024800.v1.1
prunus_persica Prupe.8G028500_v2.0.a1
pyrus_communis pycom05g01540 pycom10g01640
rosa_chinensis RchiOBHm_Chr6g0275551
rosa_laevigata RLG00000013457
rosa_multiflora Rmu_ssc0000162.1_g000014
rosa_roxburghii Rroxscaffold_7G00193190
rosa_rugosa Rorug06G0093900
rosa_samantha Rh6AG206400 Rh6BG209400 Rh6CG211500 Rh6DG202000
rosa_wichuraiana Rw6G017910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 208, 617
AccII CGCG 6 cut(s) 191, 467, 490, 529, 578, 591
AccIII TCCGGA 1 cut(s) 283
AclWI GGATC 3 cut(s) 780, 791, 804
AcsI RAATTY 2 cut(s) 57, 154
AcuI CTGAAG 2 cut(s) 881, 957
AcvI CACGTG 1 cut(s) 637
AdeI CACNNNGTG 2 cut(s) 637, 640
AfaI GTAC 1 cut(s) 785
AfiI CCNNNNNNNGG 7 cut(s) 117, 244, 283, 471, 539, 793, 806
AflII CTTAAG 1 cut(s) 202
AgsI TTSAA 6 cut(s) 71, 124, 499, 520, 895, 967
AjnI CCWGG 3 cut(s) 34, 505, 560
AluBI AGCT 5 cut(s) 89, 813, 821, 975, 1010
AluI AGCT 5 cut(s) 89, 813, 821, 975, 1010
Alw21I GWGCWC 2 cut(s) 98, 479
Alw26I GTCTC 2 cut(s) 600, 926
AlwI GGATC 3 cut(s) 780, 791, 804
Ama87I CYCGRG 2 cut(s) 277, 787
Aor13HI TCCGGA 1 cut(s) 283
AoxI GGCC 4 cut(s) 509, 530, 551, 722
ApeKI GCWGC 2 cut(s) 292, 759
ApoI RAATTY 2 cut(s) 57, 154
ArsI GACNNNNNNTTYG 6 cut(s) 57, 89, 251, 283, 422, 454
AspLEI GCGC 4 cut(s) 193, 469, 614, 631
AspS9I GGNCC 4 cut(s) 509, 531, 551, 722
AsuC2I CCSGG 4 cut(s) 330, 472, 788, 789
AsuHPI GGTGA 3 cut(s) 266, 754, 1009
AsuII TTCGAA 1 cut(s) 152
AvaI CYCGRG 2 cut(s) 277, 787
BaeGI GKGCMC 1 cut(s) 211
BamHI GGATCC 1 cut(s) 796
BanI GGYRCC 2 cut(s) 208, 617
BanII GRGCYC 1 cut(s) 52
BauI CACGAG 1 cut(s) 115
BbrPI CACGTG 1 cut(s) 637
Bbv12I GWGCWC 2 cut(s) 98, 479
BbvI GCAGC 2 cut(s) 279, 746
BccI CCATC 2 cut(s) 460, 867
BceAI ACGGC 1 cut(s) 375
BciT130I CCWGG 3 cut(s) 36, 507, 562
BcnI CCSGG 4 cut(s) 330, 472, 788, 789
BcoDI GTCTC 2 cut(s) 600, 926
BfoI RGCGCY 1 cut(s) 615
BfrI CTTAAG 1 cut(s) 202
BglI GCCNNNNNGGC 1 cut(s) 626
BisI GCNGC 9 cut(s) 293, 363, 366, 465, 491, 512, 530, 544, 760
BlsI GCNGC 9 cut(s) 294, 364, 367, 466, 492, 513, 531, 545, 761
Bme1390I CCNGG 7 cut(s) 36, 330, 472, 507, 562, 788, 789
BmeT110I CYCGRG 2 cut(s) 277, 787
BmgT120I GGNCC 4 cut(s) 509, 531, 551, 722
BmiI GGNNCC 5 cut(s) 49, 210, 619, 723, 798
BmrFI CCNGG 7 cut(s) 36, 330, 472, 507, 562, 788, 789
BmrI ACTGGG 1 cut(s) 815
BmsI GCATC 1 cut(s) 308
BmuI ACTGGG 1 cut(s) 815
Bpu14I TTCGAA 1 cut(s) 152
BpuMI CCSGG 4 cut(s) 330, 472, 788, 789
BsaAI YACGTR 1 cut(s) 637
BsaJI CCNNGG 5 cut(s) 357, 470, 488, 506, 787
BsaWI WCCGGW 2 cut(s) 244, 283
BsaXI ACNNNNNCTCC 2 cut(s) 400, 430
Bsc4I CCNNNNNNNGG 7 cut(s) 117, 244, 283, 471, 539, 793, 806
Bse118I RCCGGY 1 cut(s) 614
Bse1I ACTGG 1 cut(s) 810
Bse3DI GCAATG 1 cut(s) 98
BseAI TCCGGA 1 cut(s) 283
BseBI CCWGG 3 cut(s) 36, 507, 562
BseDI CCNNGG 5 cut(s) 357, 470, 488, 506, 787
BseGI GGATG 4 cut(s) 353, 452, 700, 878
BseLI CCNNNNNNNGG 7 cut(s) 117, 244, 283, 471, 539, 793, 806
BseMI GCAATG 1 cut(s) 98
BseMII CTCAG 1 cut(s) 104
BseNI ACTGG 1 cut(s) 810
BseRI GAGGAG 2 cut(s) 337, 944
BseSI GKGCMC 1 cut(s) 211
BseXI GCAGC 2 cut(s) 279, 746
BseYI CCCAGC 1 cut(s) 821
Bsh1236I CGCG 6 cut(s) 191, 467, 490, 529, 578, 591
BshFI GGCC 4 cut(s) 511, 532, 553, 724
BshNI GGYRCC 2 cut(s) 208, 617
BsiHKAI GWGCWC 2 cut(s) 98, 479
BsiHKCI CYCGRG 2 cut(s) 277, 787
BsiSI CCGG 9 cut(s) 245, 284, 330, 472, 554, 603, 615, 725, 788
BslFI GGGAC 2 cut(s) 205, 366
BslI CCNNNNNNNGG 7 cut(s) 117, 244, 283, 471, 539, 793, 806
BsmAI GTCTC 2 cut(s) 600, 926
BsmFI GGGAC 2 cut(s) 205, 366
BsnI GGCC 4 cut(s) 511, 532, 553, 724
BsoBI CYCGRG 2 cut(s) 277, 787
Bsp119I TTCGAA 1 cut(s) 152
Bsp1286I GDGCHC 4 cut(s) 52, 98, 211, 479
Bsp13I TCCGGA 1 cut(s) 283
Bsp143I GATC 3 cut(s) 772, 796, 946
BspANI GGCC 4 cut(s) 511, 532, 553, 724
BspCNI CTCAG 1 cut(s) 103
BspEI TCCGGA 1 cut(s) 283
BspFNI CGCG 6 cut(s) 191, 467, 490, 529, 578, 591
BspHI TCATGA 2 cut(s) 13, 1017
BspLI GGNNCC 5 cut(s) 49, 210, 619, 723, 798
BspPI GGATC 3 cut(s) 780, 791, 804
BspT104I TTCGAA 1 cut(s) 152
BspT107I GGYRCC 2 cut(s) 208, 617
BspTI CTTAAG 1 cut(s) 202
BsrDI GCAATG 1 cut(s) 98
BsrFI RCCGGY 1 cut(s) 614
BsrI ACTGG 1 cut(s) 810
BssAI RCCGGY 1 cut(s) 614
BssECI CCNNGG 5 cut(s) 357, 470, 488, 506, 787
BssMI GATC 3 cut(s) 772, 796, 946
BssSI CACGAG 1 cut(s) 115
Bst2BI CACGAG 1 cut(s) 115
Bst2UI CCWGG 3 cut(s) 36, 507, 562
Bst4CI ACNGT 1 cut(s) 219
Bst6I CTCTTC 3 cut(s) 172, 488, 893
BstAFI CTTAAG 1 cut(s) 202
BstBAI YACGTR 1 cut(s) 637
BstBI TTCGAA 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 297
BstDEI CTNAG 1 cut(s) 90
BstDSI CCRYGG 2 cut(s) 357, 488
BstF5I GGATG 4 cut(s) 353, 452, 700, 878
BstFNI CGCG 6 cut(s) 191, 467, 490, 529, 578, 591
BstH2I RGCGCY 1 cut(s) 615
BstHHI GCGC 4 cut(s) 193, 469, 614, 631
BstKTI GATC 3 cut(s) 775, 799, 949
BstMAI GTCTC 2 cut(s) 600, 926
BstMBI GATC 3 cut(s) 772, 796, 946
BstMWI GCNNNNNNNGC 1 cut(s) 626
BstNI CCWGG 3 cut(s) 36, 507, 562
BstSCI CCNGG 7 cut(s) 34, 328, 470, 505, 560, 786, 787
BstSLI GKGCMC 1 cut(s) 211
BstUI CGCG 6 cut(s) 191, 467, 490, 529, 578, 591
BstV1I GCAGC 2 cut(s) 279, 746
BstX2I RGATCY 2 cut(s) 772, 796
BstYI RGATCY 2 cut(s) 772, 796
BsuRI GGCC 4 cut(s) 511, 532, 553, 724
BtgI CCRYGG 2 cut(s) 357, 488
BtsCI GGATG 4 cut(s) 353, 452, 700, 878
BtsI GCAGTG 1 cut(s) 422
BtsIMutI CAGTG 2 cut(s) 98, 422
Cac8I GCNNGC 1 cut(s) 297
CciI TCATGA 2 cut(s) 13, 1017
CfoI GCGC 4 cut(s) 193, 469, 614, 631
Cfr10I RCCGGY 1 cut(s) 614
Cfr13I GGNCC 4 cut(s) 509, 531, 551, 722
Cfr42I CCGCGG 1 cut(s) 491
Cfr9I CCCGGG 1 cut(s) 787
CseI GACGC 2 cut(s) 197, 632
Csp6I GTAC 1 cut(s) 784
CviAII CATG 4 cut(s) 14, 44, 950, 1018
CviQI GTAC 1 cut(s) 784
DdeI CTNAG 1 cut(s) 90
DpnI GATC 3 cut(s) 774, 798, 948
DpnII GATC 3 cut(s) 772, 796, 946
DraIII CACNNNGTG 2 cut(s) 637, 640
Eam1104I CTCTTC 3 cut(s) 172, 488, 893
EarI CTCTTC 3 cut(s) 172, 488, 893
EciI GGCGGA 1 cut(s) 860
Eco24I GRGCYC 1 cut(s) 52
Eco57I CTGAAG 2 cut(s) 881, 957
Eco72I CACGTG 1 cut(s) 637
Eco88I CYCGRG 2 cut(s) 277, 787
EcoRI GAATTC 1 cut(s) 154
EcoRII CCWGG 3 cut(s) 34, 505, 560
EcoT38I GRGCYC 1 cut(s) 52
FaeI CATG 4 cut(s) 17, 47, 953, 1021
FaiI YATR 7 cut(s) 15, 45, 387, 748, 885, 951, 1019
FaqI GGGAC 2 cut(s) 205, 366
FatI CATG 4 cut(s) 13, 43, 949, 1017
FauI CCCGC 4 cut(s) 304, 495, 676, 755
Fnu4HI GCNGC 9 cut(s) 293, 363, 366, 465, 491, 512, 530, 544, 760
FokI GGATG 4 cut(s) 340, 439, 687, 885
FriOI GRGCYC 1 cut(s) 52
Fsp4HI GCNGC 9 cut(s) 293, 363, 366, 465, 491, 512, 530, 544, 760
GlaI GCGC 4 cut(s) 192, 468, 613, 630
GluI GCNGC 9 cut(s) 293, 363, 366, 465, 491, 512, 530, 544, 760
GsaI CCCAGC 1 cut(s) 825
HaeII RGCGCY 1 cut(s) 615
HaeIII GGCC 4 cut(s) 511, 532, 553, 724
HapII CCGG 9 cut(s) 245, 284, 330, 472, 554, 603, 615, 725, 788
HgaI GACGC 2 cut(s) 197, 632
HhaI GCGC 4 cut(s) 193, 469, 614, 631
Hin1II CATG 4 cut(s) 17, 47, 953, 1021
Hin6I GCGC 4 cut(s) 191, 467, 612, 629
HinP1I GCGC 4 cut(s) 191, 467, 612, 629
HinfI GANTC 8 cut(s) 10, 173, 248, 280, 287, 379, 502, 1021
HpaII CCGG 9 cut(s) 245, 284, 330, 472, 554, 603, 615, 725, 788
HphI GGTGA 3 cut(s) 266, 754, 1009
Hpy166II GTNNAC 2 cut(s) 784, 991
Hpy188III TCNNGA 4 cut(s) 14, 284, 1018, 1025
Hpy8I GTNNAC 2 cut(s) 784, 991
Hpy99I CGWCG 3 cut(s) 442, 445, 757
HpyAV CCTTC 8 cut(s) 116, 159, 236, 844, 856, 932, 976, 997
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4IV ACGT 2 cut(s) 437, 636
HpyF10VI GCNNNNNNNGC 1 cut(s) 626
HpyF3I CTNAG 1 cut(s) 90
HpySE526I ACGT 2 cut(s) 437, 636
Hsp92II CATG 4 cut(s) 17, 47, 953, 1021
HspAI GCGC 4 cut(s) 191, 467, 612, 629
Kpn2I TCCGGA 1 cut(s) 283
KspI CCGCGG 1 cut(s) 491
Kzo9I GATC 3 cut(s) 772, 796, 946
LmnI GCTCC 5 cut(s) 47, 108, 474, 810, 818
Lsp1109I GCAGC 2 cut(s) 279, 746
LweI GCATC 1 cut(s) 308
MaeII ACGT 2 cut(s) 437, 636
MalI GATC 3 cut(s) 774, 798, 948
MboI GATC 3 cut(s) 772, 796, 946
MboII GAAGA 7 cut(s) 159, 475, 511, 907, 910, 956, 1012
MflI RGATCY 2 cut(s) 772, 796
MhlI GDGCHC 4 cut(s) 52, 98, 211, 479
MluCI AATT 2 cut(s) 57, 154
MlyI GAGTC 5 cut(s) 167, 257, 281, 289, 388
MmeI TCCRAC 5 cut(s) 195, 344, 717, 747, 776
MroI TCCGGA 1 cut(s) 283
MseI TTAA 3 cut(s) 203, 585, 675
MslI CAYNNNNRTG 1 cut(s) 519
MspA1I CMGCKG 1 cut(s) 490
MspCI CTTAAG 1 cut(s) 202
MspI CCGG 9 cut(s) 245, 284, 330, 472, 554, 603, 615, 725, 788
MspR9I CCNGG 7 cut(s) 36, 330, 472, 507, 562, 788, 789
MvaI CCWGG 3 cut(s) 36, 507, 562
MvnI CGCG 6 cut(s) 191, 467, 490, 529, 578, 591
MwoI GCNNNNNNNGC 1 cut(s) 626
NciI CCSGG 4 cut(s) 330, 472, 788, 789
NdeII GATC 3 cut(s) 772, 796, 946
NlaIII CATG 4 cut(s) 17, 47, 953, 1021
NlaIV GGNNCC 5 cut(s) 49, 210, 619, 723, 798
NspV TTCGAA 1 cut(s) 152
PagI TCATGA 2 cut(s) 13, 1017
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PfeI GAWTC 3 cut(s) 10, 502, 1021
PflFI GACNNNGTC 1 cut(s) 265
PfoI TCCNGGA 1 cut(s) 34
PkrI GCNGC 9 cut(s) 294, 364, 367, 466, 492, 513, 531, 545, 761
PleI GAGTC 5 cut(s) 167, 256, 281, 288, 387
PmaCI CACGTG 1 cut(s) 637
PmlI CACGTG 1 cut(s) 637
PpsI GAGTC 5 cut(s) 167, 256, 281, 288, 387
Ppu21I YACGTR 1 cut(s) 637
Psp6I CCWGG 3 cut(s) 34, 505, 560
PspCI CACGTG 1 cut(s) 637
PspFI CCCAGC 1 cut(s) 821
PspGI CCWGG 3 cut(s) 34, 505, 560
PspN4I GGNNCC 5 cut(s) 49, 210, 619, 723, 798
PspPI GGNCC 4 cut(s) 509, 531, 551, 722
PsuI RGATCY 2 cut(s) 772, 796
PsyI GACNNNGTC 1 cut(s) 265
RsaI GTAC 1 cut(s) 785
RsaNI GTAC 1 cut(s) 784
RseI CAYNNNNRTG 1 cut(s) 519
SacII CCGCGG 1 cut(s) 491
SaqAI TTAA 3 cut(s) 203, 585, 675
SatI GCNGC 9 cut(s) 293, 363, 366, 465, 491, 512, 530, 544, 760
Sau3AI GATC 3 cut(s) 772, 796, 946
Sau96I GGNCC 4 cut(s) 509, 531, 551, 722
SchI GAGTC 5 cut(s) 167, 257, 281, 289, 388
ScrFI CCNGG 7 cut(s) 36, 330, 472, 507, 562, 788, 789
SduI GDGCHC 4 cut(s) 52, 98, 211, 479
SfaNI GCATC 1 cut(s) 308
Sfr303I CCGCGG 1 cut(s) 491
SfuI TTCGAA 1 cut(s) 152
SgrAI CRCCGGYG 1 cut(s) 614
SgrBI CCGCGG 1 cut(s) 491
SmaI CCCGGG 1 cut(s) 789
SmiMI CAYNNNNRTG 1 cut(s) 519
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
Sse9I AATT 2 cut(s) 57, 154
SspI AATATT 1 cut(s) 679
StyD4I CCNGG 7 cut(s) 34, 328, 470, 505, 560, 786, 787
TaaI ACNGT 1 cut(s) 219
TaiI ACGT 2 cut(s) 440, 639
TaqI TCGA 3 cut(s) 152, 377, 538
TasI AATT 2 cut(s) 57, 154
TauI GCSGC 7 cut(s) 365, 368, 467, 493, 514, 532, 546
TfiI GAWTC 3 cut(s) 10, 502, 1021
Tru1I TTAA 3 cut(s) 203, 585, 675
Tru9I TTAA 3 cut(s) 203, 585, 675
TscAI CASTG 2 cut(s) 98, 429
TseI GCWGC 2 cut(s) 292, 759
TspDTI ATGAA 3 cut(s) 689, 947, 1006
TspGWI ACGGA 2 cut(s) 200, 693
TspMI CCCGGG 1 cut(s) 787
TspRI CASTG 2 cut(s) 98, 429
Tth111I GACNNNGTC 1 cut(s) 265
Vha464I CTTAAG 1 cut(s) 202
XapI RAATTY 2 cut(s) 57, 154
XmaI CCCGGG 1 cut(s) 787
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.