pycom10g01640
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0012453
Physical Location & Seq
Forward (+)
1711709 .. 1713053
1345 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g01640.1

Sequence Viewer

Length: 1305 bp
ATGGAAGAGCATTTATCACAAGGAGGAGGAGGAGGTATGGTTCCGGGCGGGGCCTCGTATGGGGGGCTTGATTTGCAGGGGTCAATGAGGGGCCATCAGCAACCCCAACATCCACAGACCATACACCATCACCATCCTCAACCTCGTCAAGGGTCGTTGGTCCACCCGCCGATTCCTGAAGGGTTTCCTCTCAAAATGGGAACCATGCATCACTGCGATCAAACCATTTCCATGTTGGATTACAATAAGGGAGAGAGGTGCAAGAACTCGGCAAGTGATGAGGATGAGCCGAGTTATGTGGAAGAGGGAGATGGTCATGCTGAAGCTAGTAGAGGGAAGAAGGGGTCGCCATGGCAGCGTGTGAAGTGGACAGATCAAATGGTGAAGCTTCTGATCACTGCTGTGTCTTATATAGGTGAGGATACAAGTTCAGATTGTGGCGGTGGGGGAAGAAGGAAATATTCTGTCCTACAGAAGAAGGGAAAGTGGAAATCTGTTTCCAAGGTCATGGCAGAAAGAAGTTATCGTGTTTCTCCGCAGCAGTGTGAGGATAAATTCAATGACCTTAACAAAAGGTATAAGAAACTTAATGATATGCTTGGGAGGGGCACTTCTTGCCAGGTTGTTGAGAACCCTGCGCTTTTGGATGTGATAAAGTACCTAACGGAGAAAGAAAAAGATGATGTCAGGAAAATATTAAGCTCAAAGCACCTGTTTTATGAGGAAATGTGTTCTTATCATAATGGAAATCGTTTGCATCTGCCTCACGATCCAGCCTTGCAGAAATCTTTACATCGGGCTCTTAAAAGAGATGATCTTGACAATGATGATCTGAGAAGGGAAAATGAAGAGCATGACGACTTTGAGGAAAATAATGCTTTACGTGGAGATAACAGGGGAATATACATTTCAGAGGACTCTGTCAAGAGGTTGAGACAAGGCCAGGGCTGTGAAGATTTTAACTTCGGTAGTTCTTTGAACTCCCAAGACTGTAACAAAAGTTCTTATTTTCATCCCCAAATTCCTCAACCAGATATGAATCAAGTTTTACCTGATGGCACAAAAGCTGCTTGGTTACAGAAGCAGTGGGCTGAATCGTGTTCATTTCAGTTAGAAGAACAGAAGCTACAAATTCAAGTTGAGATGTTAGAATTGGAGAAGCAACGTTTGAAGTGGCAAAGATTTAGTAAGAAAAGGGACCGTGAACTGGAAAAGATGAGAATGGAAAATGAGAGGATGAAACTTGAGAATGAGCGTATGGCATTAGAATTGAAACAGAAGGAAATGGGTGCCGGTTTTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

435

Amino Acids

49.87

Weight (kDa)

6.67

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 120 - 210 1e-16 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21200 AT1G21200
fragaria_vesca FvH4_2g13860 FvH4_2g13860
malus_domestica MD05G1024300.v1.1 MD10G1024800.v1.1
prunus_persica Prupe.8G028500_v2.0.a1
pyrus_communis pycom05g01540 pycom10g01640
rosa_chinensis RchiOBHm_Chr6g0275551
rosa_laevigata RLG00000013457
rosa_multiflora Rmu_ssc0000162.1_g000014
rosa_roxburghii Rroxscaffold_7G00193190
rosa_rugosa Rorug06G0093900
rosa_samantha Rh6AG206400 Rh6BG209400 Rh6CG211500 Rh6DG202000
rosa_wichuraiana Rw6G017910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1289
AciI CCGC 4 cut(s) 48, 167, 441, 536
AclI AACGTT 1 cut(s) 1165
AclWI GGATC 1 cut(s) 764
AcsI RAATTY 3 cut(s) 554, 1020, 1131
AcuI CTGAAG 2 cut(s) 198, 342
AfaI GTAC 1 cut(s) 659
AfiI CCNNNNNNNGG 3 cut(s) 60, 149, 1207
AgsI TTSAA 5 cut(s) 559, 979, 1136, 1171, 1273
AjnI CCWGG 2 cut(s) 618, 942
AleI CACNNNNGTG 1 cut(s) 401
AloI GAACNNNNNNTCC 2 cut(s) 24, 56
AluBI AGCT 5 cut(s) 326, 388, 702, 1067, 1126
AluI AGCT 5 cut(s) 326, 388, 702, 1067, 1126
Alw26I GTCTC 1 cut(s) 928
AlwI GGATC 1 cut(s) 764
AoxI GGCC 3 cut(s) 51, 91, 940
ApeKI GCWGC 3 cut(s) 355, 538, 1067
ApoI RAATTY 3 cut(s) 554, 1020, 1131
Asp700I GAANNNNTTC 1 cut(s) 183
AspLEI GCGC 1 cut(s) 640
AspS9I GGNCC 4 cut(s) 51, 91, 160, 1198
AsuC2I CCSGG 1 cut(s) 45
AsuHPI GGTGA 3 cut(s) 122, 394, 428
AvaII GGWCC 2 cut(s) 160, 1198
BaeGI GKGCMC 1 cut(s) 611
BanI GGYRCC 1 cut(s) 1289
BanII GRGCYC 1 cut(s) 802
BbvI GCAGC 3 cut(s) 367, 550, 1054
BccI CCATC 5 cut(s) 102, 135, 141, 305, 1049
BciT130I CCWGG 2 cut(s) 620, 944
BciVI GTATCC 1 cut(s) 415
BclI TGATCA 1 cut(s) 393
BcnI CCSGG 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 928
BfaI CTAG 1 cut(s) 327
BfmI CTRYAG 1 cut(s) 470
BfuI GTATCC 1 cut(s) 415
BisI GCNGC 3 cut(s) 356, 539, 1068
BlsI GCNGC 3 cut(s) 357, 540, 1069
Bme1390I CCNGG 3 cut(s) 45, 620, 944
Bme18I GGWCC 2 cut(s) 160, 1198
BmgT120I GGNCC 4 cut(s) 51, 91, 160, 1198
BmiI GGNNCC 6 cut(s) 42, 52, 92, 202, 1199, 1291
BmrFI CCNGG 3 cut(s) 45, 620, 944
BmsI GCATC 2 cut(s) 217, 766
BpuEI CTTGAG 1 cut(s) 1265
BpuMI CCSGG 1 cut(s) 45
BsaAI YACGTR 1 cut(s) 884
BsaBI GATNNNNATC 1 cut(s) 1038
BsaJI CCNNGG 3 cut(s) 350, 501, 943
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 149, 1207
Bse118I RCCGGY 1 cut(s) 1292
Bse1I ACTGG 1 cut(s) 1212
Bse8I GATNNNNATC 1 cut(s) 1038
BseBI CCWGG 2 cut(s) 620, 944
BseDI CCNNGG 3 cut(s) 350, 501, 943
BseGI GGATG 6 cut(s) 109, 133, 289, 652, 1012, 1242
BseJI GATNNNNATC 1 cut(s) 1038
BseLI CCNNNNNNNGG 3 cut(s) 60, 149, 1207
BseMII CTCAG 1 cut(s) 824
BseNI ACTGG 1 cut(s) 1212
BseRI GAGGAG 3 cut(s) 39, 42, 45
BseSI GKGCMC 1 cut(s) 611
BseXI GCAGC 3 cut(s) 367, 550, 1054
BshFI GGCC 3 cut(s) 53, 93, 942
BshNI GGYRCC 1 cut(s) 1289
BsiSI CCGG 2 cut(s) 44, 1293
BslFI GGGAC 1 cut(s) 1211
BslI CCNNNNNNNGG 3 cut(s) 60, 149, 1207
BsmAI GTCTC 1 cut(s) 928
BsmFI GGGAC 1 cut(s) 1211
BsnI GGCC 3 cut(s) 53, 93, 942
Bsp1286I GDGCHC 2 cut(s) 611, 802
Bsp143I GATC 6 cut(s) 217, 373, 393, 769, 814, 829
Bsp19I CCATGG 1 cut(s) 350
BspACI CCGC 4 cut(s) 48, 167, 441, 536
BspANI GGCC 3 cut(s) 53, 93, 942
BspCNI CTCAG 1 cut(s) 825
BspLI GGNNCC 6 cut(s) 42, 52, 92, 202, 1199, 1291
BspPI GGATC 1 cut(s) 764
BspQI GCTCTTC 1 cut(s) 843
BspT107I GGYRCC 1 cut(s) 1289
BsrFI RCCGGY 1 cut(s) 1292
BsrI ACTGG 1 cut(s) 1212
BssAI RCCGGY 1 cut(s) 1292
BssECI CCNNGG 3 cut(s) 350, 501, 943
BssMI GATC 6 cut(s) 217, 373, 393, 769, 814, 829
BssT1I CCWWGG 2 cut(s) 350, 501
Bst2UI CCWGG 2 cut(s) 620, 944
Bst4CI ACNGT 2 cut(s) 992, 1202
Bst6I CTCTTC 2 cut(s) 297, 843
BstAPI GCANNNNNTGC 1 cut(s) 615
BstBAI YACGTR 1 cut(s) 884
BstDEI CTNAG 1 cut(s) 833
BstDSI CCRYGG 1 cut(s) 350
BstENI CCTNNNNNAGG 1 cut(s) 147
BstF5I GGATG 6 cut(s) 109, 133, 289, 652, 1012, 1242
BstHHI GCGC 1 cut(s) 640
BstKTI GATC 6 cut(s) 220, 376, 396, 772, 817, 832
BstMAI GTCTC 1 cut(s) 928
BstMBI GATC 6 cut(s) 217, 373, 393, 769, 814, 829
BstMWI GCNNNNNNNGC 3 cut(s) 73, 355, 615
BstNI CCWGG 2 cut(s) 620, 944
BstSCI CCNGG 3 cut(s) 43, 618, 942
BstSFI CTRYAG 1 cut(s) 470
BstSLI GKGCMC 1 cut(s) 611
BstV1I GCAGC 3 cut(s) 367, 550, 1054
BstXI CCANNNNNNTGG 1 cut(s) 508
BsuI GTATCC 1 cut(s) 415
BsuRI GGCC 3 cut(s) 53, 93, 942
BtgI CCRYGG 1 cut(s) 350
BtsCI GGATG 6 cut(s) 109, 133, 289, 652, 1012, 1242
BtsI GCAGTG 4 cut(s) 211, 396, 548, 1091
BtsIMutI CAGTG 4 cut(s) 211, 396, 548, 1091
CfoI GCGC 1 cut(s) 640
Cfr10I RCCGGY 1 cut(s) 1292
Cfr13I GGNCC 4 cut(s) 51, 91, 160, 1198
Csp6I GTAC 1 cut(s) 658
CviAII CATG 6 cut(s) 205, 232, 317, 351, 508, 854
CviQI GTAC 1 cut(s) 658
DdeI CTNAG 1 cut(s) 833
DpnI GATC 6 cut(s) 219, 375, 395, 771, 816, 831
DpnII GATC 6 cut(s) 217, 373, 393, 769, 814, 829
Eam1104I CTCTTC 2 cut(s) 297, 843
EarI CTCTTC 2 cut(s) 297, 843
Eco130I CCWWGG 2 cut(s) 350, 501
Eco24I GRGCYC 1 cut(s) 802
Eco47I GGWCC 2 cut(s) 160, 1198
Eco57I CTGAAG 2 cut(s) 198, 342
EcoNI CCTNNNNNAGG 1 cut(s) 147
EcoO109I RGGNCCY 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 618, 942
EcoT14I CCWWGG 2 cut(s) 350, 501
EcoT22I ATGCAT 1 cut(s) 210
EcoT38I GRGCYC 1 cut(s) 802
ErhI CCWWGG 2 cut(s) 350, 501
FaeI CATG 6 cut(s) 208, 235, 320, 354, 511, 857
FaqI GGGAC 1 cut(s) 1211
FatI CATG 6 cut(s) 204, 231, 316, 350, 507, 853
FauI CCCGC 2 cut(s) 41, 174
FbaI TGATCA 1 cut(s) 393
Fnu4HI GCNGC 3 cut(s) 356, 539, 1068
FokI GGATG 6 cut(s) 96, 120, 296, 659, 999, 1249
FriOI GRGCYC 1 cut(s) 802
Fsp4HI GCNGC 3 cut(s) 356, 539, 1068
FspBI CTAG 1 cut(s) 327
GlaI GCGC 1 cut(s) 639
GluI GCNGC 3 cut(s) 356, 539, 1068
HaeIII GGCC 3 cut(s) 53, 93, 942
HapII CCGG 2 cut(s) 44, 1293
HhaI GCGC 1 cut(s) 640
Hin1II CATG 6 cut(s) 208, 235, 320, 354, 511, 857
Hin6I GCGC 1 cut(s) 638
HinP1I GCGC 1 cut(s) 638
HindIII AAGCTT 1 cut(s) 386
HinfI GANTC 4 cut(s) 172, 917, 1039, 1094
HpaII CCGG 2 cut(s) 44, 1293
HphI GGTGA 3 cut(s) 122, 394, 428
Hpy166II GTNNAC 3 cut(s) 163, 369, 1205
Hpy188I TCNGA 4 cut(s) 393, 433, 834, 913
Hpy188III TCNNGA 5 cut(s) 176, 688, 767, 818, 925
Hpy8I GTNNAC 3 cut(s) 163, 369, 1205
HpyAV CCTTC 6 cut(s) 173, 334, 447, 472, 831, 1273
HpyCH4III ACNGT 2 cut(s) 992, 1202
HpyCH4IV ACGT 2 cut(s) 883, 1165
HpyCH4V TGCA 5 cut(s) 76, 208, 261, 757, 781
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 355, 615
HpyF3I CTNAG 1 cut(s) 833
HpySE526I ACGT 2 cut(s) 883, 1165
Hsp92II CATG 6 cut(s) 208, 235, 320, 354, 511, 857
HspAI GCGC 1 cut(s) 638
Ksp22I TGATCA 1 cut(s) 393
Kzo9I GATC 6 cut(s) 217, 373, 393, 769, 814, 829
LguI GCTCTTC 1 cut(s) 843
Lsp1109I GCAGC 3 cut(s) 367, 550, 1054
LweI GCATC 2 cut(s) 217, 766
MaeI CTAG 1 cut(s) 327
MaeII ACGT 2 cut(s) 883, 1165
MaeIII GTNAC 2 cut(s) 992, 1074
MalI GATC 6 cut(s) 219, 375, 395, 771, 816, 831
MboI GATC 6 cut(s) 217, 373, 393, 769, 814, 829
MboII GAAGA 8 cut(s) 17, 314, 349, 462, 487, 860, 965, 1127
MhlI GDGCHC 2 cut(s) 611, 802
MluCI AATT 5 cut(s) 554, 1020, 1131, 1151, 1268
MlyI GAGTC 1 cut(s) 911
MmeI TCCRAC 1 cut(s) 216
Mph1103I ATGCAT 1 cut(s) 210
MroXI GAANNNNTTC 1 cut(s) 183
MseI TTAA 6 cut(s) 567, 588, 698, 804, 960, 1303
MslI CAYNNNNRTG 2 cut(s) 230, 401
MspI CCGG 2 cut(s) 44, 1293
MspR9I CCNGG 3 cut(s) 45, 620, 944
MvaI CCWGG 2 cut(s) 620, 944
MwoI GCNNNNNNNGC 3 cut(s) 73, 355, 615
NciI CCSGG 1 cut(s) 45
NcoI CCATGG 1 cut(s) 350
NdeII GATC 6 cut(s) 217, 373, 393, 769, 814, 829
NlaIII CATG 6 cut(s) 208, 235, 320, 354, 511, 857
NlaIV GGNNCC 6 cut(s) 42, 52, 92, 202, 1199, 1291
NmeAIII GCCGAG 2 cut(s) 248, 315
NsiI ATGCAT 1 cut(s) 210
OliI CACNNNNGTG 1 cut(s) 401
PciSI GCTCTTC 1 cut(s) 843
PdmI GAANNNNTTC 1 cut(s) 183
PfeI GAWTC 3 cut(s) 172, 1039, 1094
PflFI GACNNNGTC 1 cut(s) 920
PkrI GCNGC 3 cut(s) 357, 540, 1069
PleI GAGTC 1 cut(s) 911
PpsI GAGTC 1 cut(s) 911
Ppu21I YACGTR 1 cut(s) 884
Psp1406I AACGTT 1 cut(s) 1165
Psp6I CCWGG 2 cut(s) 618, 942
PspGI CCWGG 2 cut(s) 618, 942
PspN4I GGNNCC 6 cut(s) 42, 52, 92, 202, 1199, 1291
PspPI GGNCC 4 cut(s) 51, 91, 160, 1198
PsrI GAACNNNNNNTAC 4 cut(s) 985, 1017, 1110, 1142
PsyI GACNNNGTC 1 cut(s) 920
RsaI GTAC 1 cut(s) 659
RsaNI GTAC 1 cut(s) 658
RseI CAYNNNNRTG 2 cut(s) 230, 401
SapI GCTCTTC 1 cut(s) 843
SaqAI TTAA 6 cut(s) 567, 588, 698, 804, 960, 1303
SatI GCNGC 3 cut(s) 356, 539, 1068
Sau3AI GATC 6 cut(s) 217, 373, 393, 769, 814, 829
Sau96I GGNCC 4 cut(s) 51, 91, 160, 1198
SchI GAGTC 1 cut(s) 911
ScrFI CCNGG 3 cut(s) 45, 620, 944
SduI GDGCHC 2 cut(s) 611, 802
SfaNI GCATC 2 cut(s) 217, 766
SfcI CTRYAG 1 cut(s) 470
SinI GGWCC 2 cut(s) 160, 1198
SmiMI CAYNNNNRTG 2 cut(s) 230, 401
SmlI CTYRAG 1 cut(s) 1244
SmoI CTYRAG 1 cut(s) 1244
Sse9I AATT 5 cut(s) 554, 1020, 1131, 1151, 1268
SsiI CCGC 4 cut(s) 48, 167, 441, 536
SspI AATATT 2 cut(s) 461, 696
SspMI CTAG 1 cut(s) 327
StyD4I CCNGG 3 cut(s) 43, 618, 942
StyI CCWWGG 2 cut(s) 350, 501
TaaI ACNGT 2 cut(s) 992, 1202
TaiI ACGT 2 cut(s) 886, 1168
TasI AATT 5 cut(s) 554, 1020, 1131, 1151, 1268
TfiI GAWTC 3 cut(s) 172, 1039, 1094
Tru1I TTAA 6 cut(s) 567, 588, 698, 804, 960, 1303
Tru9I TTAA 6 cut(s) 567, 588, 698, 804, 960, 1303
TscAI CASTG 4 cut(s) 218, 403, 548, 1091
TseI GCWGC 3 cut(s) 355, 538, 1067
TspDTI ATGAA 5 cut(s) 861, 1001, 1052, 1092, 1253
TspGWI ACGGA 1 cut(s) 680
TspRI CASTG 4 cut(s) 218, 403, 548, 1091
Tth111I GACNNNGTC 1 cut(s) 920
VpaK11BI GGWCC 2 cut(s) 160, 1198
XagI CCTNNNNNAGG 1 cut(s) 147
XapI RAATTY 3 cut(s) 554, 1020, 1131
XcmI CCANNNNNNNNNTGG 1 cut(s) 232
XmnI GAANNNNTTC 1 cut(s) 183
XspI CTAG 1 cut(s) 327
Zsp2I ATGCAT 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.