Rroxscaffold_7G00193190
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0012453
Physical Location & Seq
Forward (+)
34534296 .. 34537473
3178 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00193190.1

Sequence Viewer

Length: 1482 bp
ATGGTAGATGATTTCGTCTGCTCGGGCCTTGGGGTGCCTGCTAACACTTCAAACATATACAAGTTTGGATTCACAACTGCATTTGCTTTTAACTTCTCTGGCCTCAATGGCCTCAGCGTTTCTGTGGGTCGCGCAGATGTGGAAGCTGGCAATGTTGTACCCATCCACCCTCACCCCGGAGCTACCAAACTTGTGGTTATTGGGGAAGGCAGTTCGATAATTGGCGGGTTCAATGCCTCAAACAATAAGGTTTATCAAAAGCCCTTGAACAAGGGTGAGACTATGGTTCTTTCTCAAGGCTTGTATCACTTTGTGAATCAGGGAGCAAAGGCTACTTTACTTGACGCTGCTCAGATTCAGAAACTTAAAAAACTCTTTGGAGAGAAATGCAAGAACTCGGCAAGCGATGAGGATGAGCCGAGTTATACAGAGGAGGGTGTTGATAGTCATATTGAAGCACAGAGAGGGAAGAAGGGGTCTCCCTGGCAGCGTGTGAAGTGGACGGATAAGATGGTGAGGCTTCTGATTACTGCAGTATCTTATATAGGTGAGGATATTGGTTCAGATTGTGGTGGCGGGGGAAGAAGGAAGTTTTCTGCTCTGCAGAAAAAGGGGAAGTGGAAATCTGTTTCCAAGGTCATGGCAGAAAGGGGCTATCATGTTTCTCCACAGCAGTGTGAGGATAAATTCAATGACCTTAATAAAAGGTATAAGAAACTTAATGACATGCTGGGGAGGGGCACTTCTTGCCAGGTTGTTGAGAACCCTGCACTTTTGGATGTGATAGATTACTTAACAGACAAAGAAAAAGATGATGTGAGGAAAATATTAAGTTCAAAGCACCTGTTTTATGAAGAGATGTGTTCCTACCATAATGGGAATCGTTTACATCTGCCTCACGATCCAGCATTGCAGCATTCCTTGCAGGAGGCTCTTAGAAATAGAGATGATCACGACCCTGATGATCTGAGGAGGCATCACCATGATGATCTTGATGAAGATGATCAAGATATGGAAACTGATGAGCGTGATGATTTTGAGGAAAATAATGCTTCACATGGTGATAACAGGGGAATATTTGGCGGGTTAGGGGACTCTGTGAAGAGGTTGAGGCAAGGTCAAGGCCGTGAAGACTTTAACTTTGGTGGTTCTTTAAATGCCCAAGATTGTAACCAAAGTTCTTATTCTCATCCCCAAATTGCCCAAGGTGATTTGAATCAAGTCTTACCTGATAGCACAAAAGCTGCTTGGTTACAGAAGCAGTGGATTGAATCCCGATCTGTTCAGTTAGAAGAACAGAAGCTACAAATTCAAGTTGAGATGTTAGAATTGGAGAAACAACGTCTCAAGTGGCAAAAATTTAGCAAAAAAAGGGACCGTGAACTGGAAAAGCTGAAGATGGAAAATGAGAGAATGAAGCTTGAGAATGAGCGTATGGCATTAGAATTGAAAAGGAAGGAAATGGGTGCTGGATTTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

493

Amino Acids

55.71

Weight (kDa)

6.18

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 9 - 106 3.1e-12 Cupin
Myb_DNA-bind_4 PF13837 164 - 254 1.8e-17 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21200 AT1G21200
fragaria_vesca FvH4_2g13860 FvH4_2g13860
malus_domestica MD05G1024300.v1.1 MD10G1024800.v1.1
prunus_persica Prupe.8G028500_v2.0.a1
pyrus_communis pycom05g01540 pycom10g01640
rosa_chinensis RchiOBHm_Chr6g0275551
rosa_laevigata RLG00000013457
rosa_multiflora Rmu_ssc0000162.1_g000014
rosa_roxburghii Rroxscaffold_7G00193190
rosa_rugosa Rorug06G0093900
rosa_samantha Rh6AG206400 Rh6BG209400 Rh6CG211500 Rh6DG202000
rosa_wichuraiana Rw6G017910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 34
AccII CGCG 1 cut(s) 132
AciI CCGC 3 cut(s) 225, 576, 1083
AclWI GGATC 1 cut(s) 896
AcsI RAATTY 3 cut(s) 686, 1308, 1358
AcuI CTGAAG 1 cut(s) 1415
AdeI CACNNNGTG 2 cut(s) 313, 1061
AfaI GTAC 1 cut(s) 159
AfiI CCNNNNNNNGG 2 cut(s) 176, 1384
AjnI CCWGG 2 cut(s) 482, 750
AleI CACNNNNGTG 1 cut(s) 673
AluBI AGCT 7 cut(s) 146, 182, 1244, 1303, 1393, 1420, 1479
AluI AGCT 7 cut(s) 146, 182, 1244, 1303, 1393, 1420, 1479
Alw26I GTCTC 3 cut(s) 272, 483, 1349
AlwI GGATC 1 cut(s) 896
Ama87I CYCGRG 1 cut(s) 22
AoxI GGCC 4 cut(s) 25, 100, 109, 1123
ApeKI GCWGC 4 cut(s) 347, 487, 913, 1244
ApoI RAATTY 3 cut(s) 686, 1308, 1358
ArsI GACNNNNNNTTYG 2 cut(s) 1124, 1156
AspLEI GCGC 1 cut(s) 134
AspS9I GGNCC 2 cut(s) 25, 1375
AsuC2I CCSGG 1 cut(s) 177
AsuHPI GGTGA 7 cut(s) 164, 287, 526, 560, 971, 1073, 1220
AvaI CYCGRG 1 cut(s) 22
AvaII GGWCC 1 cut(s) 1375
BaeGI GKGCMC 1 cut(s) 743
BaeI ACNNNNGTAYC 2 cut(s) 519, 552
BanI GGYRCC 1 cut(s) 34
BbsI GAAGAC 1 cut(s) 1137
BbvCI CCTCAGC 1 cut(s) 113
BbvI GCAGC 4 cut(s) 334, 499, 925, 1231
BccI CCATC 3 cut(s) 170, 505, 1393
BceAI ACGGC 1 cut(s) 1110
BciT130I CCWGG 2 cut(s) 484, 752
BclI TGATCA 2 cut(s) 949, 1003
BcnI CCSGG 1 cut(s) 177
BcoDI GTCTC 3 cut(s) 272, 483, 1349
BfmI CTRYAG 2 cut(s) 531, 602
BglI GCCNNNNNGGC 1 cut(s) 108
BisI GCNGC 4 cut(s) 348, 488, 914, 1245
BlsI GCNGC 4 cut(s) 349, 489, 915, 1246
Bme1390I CCNGG 3 cut(s) 177, 484, 752
Bme18I GGWCC 1 cut(s) 1375
BmeT110I CYCGRG 1 cut(s) 22
BmgT120I GGNCC 2 cut(s) 25, 1375
BmiI GGNNCC 2 cut(s) 36, 1376
BmrFI CCNGG 3 cut(s) 177, 484, 752
BmsI GCATC 1 cut(s) 985
BpiI GAAGAC 1 cut(s) 1137
Bpu10I CCTNAGC 1 cut(s) 113
BpuEI CTTGAG 3 cut(s) 279, 1331, 1442
BpuMI CCSGG 1 cut(s) 177
BsaBI GATNNNNATC 1 cut(s) 1215
BsaI GGTCTC 1 cut(s) 483
BsaJI CCNNGG 5 cut(s) 28, 175, 482, 633, 1204
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 1384
Bse1I ACTGG 1 cut(s) 1389
Bse3DI GCAATG 2 cut(s) 157, 908
Bse8I GATNNNNATC 1 cut(s) 1215
BseBI CCWGG 2 cut(s) 484, 752
BseDI CCNNGG 5 cut(s) 28, 175, 482, 633, 1204
BseGI GGATG 4 cut(s) 162, 418, 784, 1189
BseJI GATNNNNATC 1 cut(s) 1215
BseLI CCNNNNNNNGG 2 cut(s) 176, 1384
BseMI GCAATG 2 cut(s) 157, 908
BseMII CTCAG 3 cut(s) 127, 365, 959
BseNI ACTGG 1 cut(s) 1389
BseRI GAGGAG 2 cut(s) 446, 985
BseSI GKGCMC 1 cut(s) 743
BseXI GCAGC 4 cut(s) 334, 499, 925, 1231
BseYI CCCAGC 1 cut(s) 730
BsgI GTGCAG 1 cut(s) 753
Bsh1236I CGCG 1 cut(s) 132
BshFI GGCC 4 cut(s) 27, 102, 111, 1125
BshNI GGYRCC 1 cut(s) 34
BsiHKCI CYCGRG 1 cut(s) 22
BsiSI CCGG 1 cut(s) 177
BslFI GGGAC 2 cut(s) 1106, 1388
BslI CCNNNNNNNGG 2 cut(s) 176, 1384
BsmAI GTCTC 3 cut(s) 272, 483, 1349
BsmBI CGTCTC 1 cut(s) 1349
BsmFI GGGAC 2 cut(s) 1106, 1388
BsmI GAATGC 1 cut(s) 916
BsnI GGCC 4 cut(s) 27, 102, 111, 1125
Bso31I GGTCTC 1 cut(s) 483
BsoBI CYCGRG 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 743
Bsp143I GATC 6 cut(s) 901, 949, 964, 988, 1003, 1277
BspACI CCGC 3 cut(s) 225, 576, 1083
BspANI GGCC 4 cut(s) 27, 102, 111, 1125
BspCNI CTCAG 3 cut(s) 126, 364, 960
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 2 cut(s) 36, 1376
BspMAI CTGCAG 2 cut(s) 535, 606
BspPI GGATC 1 cut(s) 896
BspT107I GGYRCC 1 cut(s) 34
BspTNI GGTCTC 1 cut(s) 483
BsrDI GCAATG 2 cut(s) 157, 908
BsrI ACTGG 1 cut(s) 1389
BssECI CCNNGG 5 cut(s) 28, 175, 482, 633, 1204
BssMI GATC 6 cut(s) 901, 949, 964, 988, 1003, 1277
BssT1I CCWWGG 3 cut(s) 28, 633, 1204
Bst2UI CCWGG 2 cut(s) 484, 752
Bst4CI ACNGT 1 cut(s) 1379
Bst6I CTCTTC 2 cut(s) 849, 1097
BstAPI GCANNNNNTGC 2 cut(s) 747, 922
BstC8I GCNNGC 3 cut(s) 39, 148, 403
BstDEI CTNAG 4 cut(s) 113, 351, 935, 968
BstF5I GGATG 4 cut(s) 162, 418, 784, 1189
BstFNI CGCG 1 cut(s) 132
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 6 cut(s) 904, 952, 967, 991, 1006, 1280
BstMAI GTCTC 3 cut(s) 272, 483, 1349
BstMBI GATC 6 cut(s) 901, 949, 964, 988, 1003, 1277
BstMWI GCNNNNNNNGC 3 cut(s) 108, 747, 922
BstNI CCWGG 2 cut(s) 484, 752
BstNSI RCATGY 1 cut(s) 730
BstSCI CCNGG 3 cut(s) 175, 482, 750
BstSFI CTRYAG 2 cut(s) 531, 602
BstSLI GKGCMC 1 cut(s) 743
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 4 cut(s) 334, 499, 925, 1231
BstV2I GAAGAC 1 cut(s) 1137
BstXI CCANNNNNNTGG 2 cut(s) 193, 640
BsuRI GGCC 4 cut(s) 27, 102, 111, 1125
BtgZI GCGATG 1 cut(s) 420
BtsCI GGATG 4 cut(s) 162, 418, 784, 1189
BtsI GCAGTG 2 cut(s) 680, 1268
BtsIMutI CAGTG 2 cut(s) 680, 1268
Cac8I GCNNGC 3 cut(s) 39, 148, 403
CfoI GCGC 1 cut(s) 134
Cfr13I GGNCC 2 cut(s) 25, 1375
CseI GACGC 1 cut(s) 353
Csp6I GTAC 1 cut(s) 158
CviAII CATG 5 cut(s) 640, 659, 727, 983, 1058
CviQI GTAC 1 cut(s) 158
DdeI CTNAG 4 cut(s) 113, 351, 935, 968
DpnI GATC 6 cut(s) 903, 951, 966, 990, 1005, 1279
DpnII GATC 6 cut(s) 901, 949, 964, 988, 1003, 1277
DraI TTTAAA 1 cut(s) 1155
DraIII CACNNNGTG 2 cut(s) 313, 1061
Eam1104I CTCTTC 2 cut(s) 849, 1097
EarI CTCTTC 2 cut(s) 849, 1097
Eco130I CCWWGG 3 cut(s) 28, 633, 1204
Eco31I GGTCTC 1 cut(s) 483
Eco47I GGWCC 1 cut(s) 1375
Eco57I CTGAAG 1 cut(s) 1415
Eco88I CYCGRG 1 cut(s) 22
EcoRII CCWGG 2 cut(s) 482, 750
EcoT14I CCWWGG 3 cut(s) 28, 633, 1204
ErhI CCWWGG 3 cut(s) 28, 633, 1204
Esp3I CGTCTC 1 cut(s) 1349
FaeI CATG 5 cut(s) 643, 662, 730, 986, 1061
FaqI GGGAC 2 cut(s) 1106, 1388
FatI CATG 5 cut(s) 639, 658, 726, 982, 1057
FauI CCCGC 3 cut(s) 218, 569, 1076
FbaI TGATCA 2 cut(s) 949, 1003
Fnu4HI GCNGC 4 cut(s) 348, 488, 914, 1245
FokI GGATG 4 cut(s) 149, 425, 791, 1176
Fsp4HI GCNGC 4 cut(s) 348, 488, 914, 1245
GlaI GCGC 1 cut(s) 133
GluI GCNGC 4 cut(s) 348, 488, 914, 1245
GsaI CCCAGC 1 cut(s) 734
HaeIII GGCC 4 cut(s) 27, 102, 111, 1125
HapII CCGG 1 cut(s) 177
HgaI GACGC 1 cut(s) 353
HhaI GCGC 1 cut(s) 134
Hin1II CATG 5 cut(s) 643, 662, 730, 986, 1061
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HindIII AAGCTT 1 cut(s) 1418
HinfI GANTC 7 cut(s) 69, 316, 355, 880, 1094, 1216, 1271
HpaII CCGG 1 cut(s) 177
HphI GGTGA 7 cut(s) 164, 287, 526, 560, 971, 1073, 1220
Hpy166II GTNNAC 3 cut(s) 501, 887, 1382
Hpy188I TCNGA 5 cut(s) 354, 360, 525, 565, 969
Hpy188III TCNNGA 5 cut(s) 899, 953, 992, 1007, 1275
Hpy8I GTNNAC 3 cut(s) 501, 887, 1382
HpyAV CCTTC 4 cut(s) 200, 466, 579, 1450
HpyCH4III ACNGT 1 cut(s) 1379
HpyCH4IV ACGT 1 cut(s) 1342
HpyCH4V TGCA 7 cut(s) 80, 390, 533, 604, 770, 913, 925
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 747, 922
HpyF3I CTNAG 4 cut(s) 113, 351, 935, 968
HpySE526I ACGT 1 cut(s) 1342
Hsp92II CATG 5 cut(s) 643, 662, 730, 986, 1061
HspAI GCGC 1 cut(s) 132
Ksp22I TGATCA 2 cut(s) 949, 1003
Kzo9I GATC 6 cut(s) 901, 949, 964, 988, 1003, 1277
LmnI GCTCC 2 cut(s) 179, 323
Lsp1109I GCAGC 4 cut(s) 334, 499, 925, 1231
LweI GCATC 1 cut(s) 985
MaeII ACGT 1 cut(s) 1342
MaeIII GTNAC 2 cut(s) 1169, 1251
MalI GATC 6 cut(s) 903, 951, 966, 990, 1005, 1279
MboI GATC 6 cut(s) 901, 949, 964, 988, 1003, 1277
MboII GAAGA 8 cut(s) 481, 594, 866, 1010, 1114, 1142, 1304, 1408
MhlI GDGCHC 1 cut(s) 743
MluCI AATT 7 cut(s) 219, 686, 1197, 1308, 1328, 1358, 1445
MlyI GAGTC 1 cut(s) 1088
MseI TTAA 8 cut(s) 90, 366, 699, 720, 794, 830, 1137, 1154
MslI CAYNNNNRTG 3 cut(s) 673, 981, 984
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 3 cut(s) 177, 484, 752
Mva1269I GAATGC 1 cut(s) 916
MvaI CCWGG 2 cut(s) 484, 752
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 3 cut(s) 108, 747, 922
NciI CCSGG 1 cut(s) 177
NdeII GATC 6 cut(s) 901, 949, 964, 988, 1003, 1277
NlaIII CATG 5 cut(s) 643, 662, 730, 986, 1061
NlaIV GGNNCC 2 cut(s) 36, 1376
NmeAIII GCCGAG 2 cut(s) 377, 444
NspI RCATGY 1 cut(s) 730
OliI CACNNNNGTG 1 cut(s) 673
PctI GAATGC 1 cut(s) 916
PfeI GAWTC 6 cut(s) 69, 316, 355, 880, 1216, 1271
PkrI GCNGC 4 cut(s) 349, 489, 915, 1246
PleI GAGTC 1 cut(s) 1088
PpsI GAGTC 1 cut(s) 1088
Psp6I CCWGG 2 cut(s) 482, 750
PspFI CCCAGC 1 cut(s) 730
PspGI CCWGG 2 cut(s) 482, 750
PspN4I GGNNCC 2 cut(s) 36, 1376
PspPI GGNCC 2 cut(s) 25, 1375
PsrI GAACNNNNNNTAC 4 cut(s) 1162, 1194, 1287, 1319
PstI CTGCAG 2 cut(s) 535, 606
RsaI GTAC 1 cut(s) 159
RsaNI GTAC 1 cut(s) 158
RseI CAYNNNNRTG 3 cut(s) 673, 981, 984
SaqAI TTAA 8 cut(s) 90, 366, 699, 720, 794, 830, 1137, 1154
SatI GCNGC 4 cut(s) 348, 488, 914, 1245
Sau3AI GATC 6 cut(s) 901, 949, 964, 988, 1003, 1277
Sau96I GGNCC 2 cut(s) 25, 1375
SchI GAGTC 1 cut(s) 1088
ScrFI CCNGG 3 cut(s) 177, 484, 752
SduI GDGCHC 1 cut(s) 743
SfaNI GCATC 1 cut(s) 985
SfcI CTRYAG 2 cut(s) 531, 602
SfiI GGCCNNNNNGGCC 1 cut(s) 108
SinI GGWCC 1 cut(s) 1375
SmiMI CAYNNNNRTG 3 cut(s) 673, 981, 984
SmlI CTYRAG 3 cut(s) 294, 1346, 1421
SmoI CTYRAG 3 cut(s) 294, 1346, 1421
Sse9I AATT 7 cut(s) 219, 686, 1197, 1308, 1328, 1358, 1445
SsiI CCGC 3 cut(s) 225, 576, 1083
SspI AATATT 2 cut(s) 828, 1077
StyD4I CCNGG 3 cut(s) 175, 482, 750
StyI CCWWGG 3 cut(s) 28, 633, 1204
TaaI ACNGT 1 cut(s) 1379
TaiI ACGT 1 cut(s) 1345
TaqI TCGA 1 cut(s) 215
TasI AATT 7 cut(s) 219, 686, 1197, 1308, 1328, 1358, 1445
TfiI GAWTC 6 cut(s) 69, 316, 355, 880, 1216, 1271
Tru1I TTAA 8 cut(s) 90, 366, 699, 720, 794, 830, 1137, 1154
Tru9I TTAA 8 cut(s) 90, 366, 699, 720, 794, 830, 1137, 1154
TscAI CASTG 2 cut(s) 680, 1268
TseI GCWGC 4 cut(s) 347, 487, 913, 1244
TspDTI ATGAA 3 cut(s) 867, 1011, 1430
TspGWI ACGGA 1 cut(s) 518
TspRI CASTG 2 cut(s) 680, 1268
VpaK11BI GGWCC 1 cut(s) 1375
XapI RAATTY 3 cut(s) 686, 1308, 1358
XceI RCATGY 1 cut(s) 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.