Prupe.8G028500_v2.0.a1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0012453
Physical Location & Seq
Forward (+)
2578779 .. 2580342
1564 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G028500.1

Sequence Viewer

Length: 1338 bp
ATGGAAGGGCACTTATCACAGGGAGGTATGGTTCCTGGTGGGGCTTCCTACGGTGGCCTTGATTTAGAAGGATCGATGAGGGTTCAACATCAAACCCAACACCCACACACCATACACCAACACCATCCTCATCCTCGTCAAGGGTCCTTGGCCCATCCATCGATTCACGAGGGTTTTCCTCTCAAAATGGGAACCATGCATAATTGTGACCAAACCATCTCCATGATGGATTACAATAAGGGAGAGAGGTCCAAGAACTCAGCAAGCGATGAGGATGAGCCGAGTTATACGGAGGAGGGTACTGATGGCCATGCTGAAGGAAATAGAGGGAAGAAGGGATCACCATGGCAGCGTGTAAAGTGGACAGATCAGATGGTGAAGCTTCTGATCACTGCTGTATCTTATATAGGTGAGGATACAAGTTCTGATTGTGGTAGTGGGGGAAGGAGGAAATATTCTACTTTACAGAAAAAGGGAAAGTGGAAATCTGTTTCCAAGGTCATGGCAGAAAGAGGTTTTCATGTTTCTCCGCAGCAGTGTGAGGATAAATTCAATGACCTGAACAAAAGGTATAAGAAACTTAACGACATGCTTGGGAGGGGCACGTCTTGCCAGGTTGTTGAGAACCAGGCACTTTTGGATGTGATAGATTACCTAACAGAGAAAGAAAAAGATGATGTTAGGAAAATATTAAGCTCAAAGCACCTATTTTATGAGGAGATGTGTTCTTACCATAATGGGAATCGTTTGCATCTGCCTCATGATCCAGCATTGCAGAAATCCTTACAGCGGGCTCTTAGAAGAGATGAGCATGACAATGATGATCCGAGAAGGCACCACCATGATGATCTTGACGAAGATGATCAGGATATGGAAACTGATGAGCATGAAGACTTTGAGGAAAATAATGCTTCACATGTCGATAACAGGGGAATATATGTTTTAGAAGACTCTGTAAAGAGGTTGAGACAAGGCCAGGGCCGTGAAGAATTTAACTATGGTAGTTCATTGAATCCCCAGGACTGTAACAAGAGTTCTTATTGTCATCCACCTATTCCCCCAGCTGATATGAATCAAGTCTTACCCGATGGCACAAAAGCTGCCTGGCTACAGAAGCAATGGATTGAATCTCGATCTCTTCAGTTAGAAGAACAGAAGCTGCAAATTCAAGTTGAGATGTTAGAATTGGAGAAACAGCGTTTCAAGTGGCAAAGATTTAGTAAGAAAAGGGACCGTGAATTGGAAAAGCTGAGGATGGAAAATGAGAGGATGAAGCTTGAGAATGAGCGCATGGCATTGGAATTGAAACGGAAGGAAATGGGGGCTGGATTTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

446

Amino Acids

51.47

Weight (kDa)

6.13

Isoelectric Point (pI)

45.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21200 AT1G21200
fragaria_vesca FvH4_2g13860 FvH4_2g13860
malus_domestica MD05G1024300.v1.1 MD10G1024800.v1.1
prunus_persica Prupe.8G028500_v2.0.a1
pyrus_communis pycom05g01540 pycom10g01640
rosa_chinensis RchiOBHm_Chr6g0275551
rosa_laevigata RLG00000013457
rosa_multiflora Rmu_ssc0000162.1_g000014
rosa_roxburghii Rroxscaffold_7G00193190
rosa_rugosa Rorug06G0093900
rosa_samantha Rh6AG206400 Rh6BG209400 Rh6CG211500 Rh6DG202000
rosa_wichuraiana Rw6G017910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 834
AciI CCGC 2 cut(s) 530, 790
AclWI GGATC 4 cut(s) 79, 346, 758, 818
AcoI YGGCCR 1 cut(s) 307
AcsI RAATTY 3 cut(s) 548, 989, 1164
AcuI CTGAAG 2 cut(s) 336, 1124
AfaI GTAC 1 cut(s) 301
AfiI CCNNNNNNNGG 3 cut(s) 140, 789, 1240
AflIII ACRYGT 1 cut(s) 916
AgsI TTSAA 7 cut(s) 86, 553, 1012, 1127, 1169, 1204, 1306
AjiI CACGTC 1 cut(s) 606
AjnI CCWGG 6 cut(s) 34, 612, 627, 975, 1017, 1103
AloI GAACNNNNNNTCC 2 cut(s) 15, 47
AluBI AGCT 7 cut(s) 382, 696, 1064, 1100, 1159, 1249, 1276
AluI AGCT 7 cut(s) 382, 696, 1064, 1100, 1159, 1249, 1276
Alw26I GTCTC 1 cut(s) 961
AlwI GGATC 4 cut(s) 79, 346, 758, 818
AlwNI CAGNNNCTG 1 cut(s) 1159
AoxI GGCC 5 cut(s) 55, 150, 307, 973, 979
ApeKI GCWGC 4 cut(s) 349, 532, 1100, 1159
ApoI RAATTY 3 cut(s) 548, 989, 1164
AspLEI GCGC 1 cut(s) 1290
AspS9I GGNCC 5 cut(s) 144, 151, 249, 979, 1231
AsuHPI GGTGA 3 cut(s) 333, 388, 422
AvaII GGWCC 3 cut(s) 144, 249, 1231
BaeGI GKGCMC 2 cut(s) 12, 605
BaeI ACNNNNGTAYC 2 cut(s) 381, 414
BalI TGGCCA 1 cut(s) 309
BanI GGYRCC 1 cut(s) 834
BanII GRGCYC 1 cut(s) 796
BauI CACGAG 1 cut(s) 167
BbsI GAAGAC 2 cut(s) 897, 954
BbvCI CCTCAGC 1 cut(s) 1250
BbvI GCAGC 4 cut(s) 361, 544, 1087, 1146
BccI CCATC 9 cut(s) 132, 162, 166, 220, 224, 299, 367, 1082, 1249
BceAI ACGGC 1 cut(s) 966
BciT130I CCWGG 6 cut(s) 36, 614, 629, 977, 1019, 1105
BciVI GTATCC 1 cut(s) 409
BclI TGATCA 2 cut(s) 387, 862
BcoDI GTCTC 1 cut(s) 961
BfmI CTRYAG 1 cut(s) 1109
BfuI GTATCC 1 cut(s) 409
BisI GCNGC 4 cut(s) 350, 533, 1101, 1160
BlsI GCNGC 4 cut(s) 351, 534, 1102, 1161
Bme1390I CCNGG 6 cut(s) 36, 614, 629, 977, 1019, 1105
Bme18I GGWCC 3 cut(s) 144, 249, 1231
BmgBI CACGTC 1 cut(s) 606
BmgT120I GGNCC 5 cut(s) 144, 151, 249, 979, 1231
BmiI GGNNCC 5 cut(s) 33, 145, 193, 836, 1232
BmrFI CCNGG 6 cut(s) 36, 614, 629, 977, 1019, 1105
BmsI GCATC 1 cut(s) 760
BpiI GAAGAC 2 cut(s) 897, 954
Bpu10I CCTNAGC 1 cut(s) 1250
BpuEI CTTGAG 1 cut(s) 1298
Bsa29I ATCGAT 2 cut(s) 74, 161
BsaBI GATNNNNATC 1 cut(s) 1071
BsaJI CCNNGG 5 cut(s) 147, 344, 495, 976, 1017
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bsc4I CCNNNNNNNGG 3 cut(s) 140, 789, 1240
Bse3DI GCAATG 2 cut(s) 770, 1124
Bse8I GATNNNNATC 1 cut(s) 1071
BseBI CCWGG 6 cut(s) 36, 614, 629, 977, 1019, 1105
BseCI ATCGAT 2 cut(s) 74, 161
BseDI CCNNGG 5 cut(s) 147, 344, 495, 976, 1017
BseGI GGATG 8 cut(s) 124, 130, 154, 280, 646, 1045, 1260, 1275
BseJI GATNNNNATC 1 cut(s) 1071
BseLI CCNNNNNNNGG 3 cut(s) 140, 789, 1240
BseMI GCAATG 2 cut(s) 770, 1124
BseMII CTCAG 2 cut(s) 273, 1241
BseRI GAGGAG 2 cut(s) 308, 731
BseSI GKGCMC 2 cut(s) 12, 605
BseXI GCAGC 4 cut(s) 361, 544, 1087, 1146
BseYI CCCAGC 1 cut(s) 1060
BshFI GGCC 5 cut(s) 57, 152, 309, 975, 981
BshNI GGYRCC 1 cut(s) 834
BshVI ATCGAT 2 cut(s) 74, 161
BslFI GGGAC 1 cut(s) 1244
BslI CCNNNNNNNGG 3 cut(s) 140, 789, 1240
BsmAI GTCTC 1 cut(s) 961
BsmFI GGGAC 1 cut(s) 1244
BsnI GGCC 5 cut(s) 57, 152, 309, 975, 981
Bsp1286I GDGCHC 3 cut(s) 12, 605, 796
Bsp143I GATC 9 cut(s) 71, 338, 367, 387, 763, 823, 847, 862, 1133
Bsp19I CCATGG 1 cut(s) 344
BspACI CCGC 2 cut(s) 530, 790
BspANI GGCC 5 cut(s) 57, 152, 309, 975, 981
BspCNI CTCAG 2 cut(s) 272, 1242
BspDI ATCGAT 2 cut(s) 74, 161
BspHI TCATGA 1 cut(s) 760
BspLI GGNNCC 5 cut(s) 33, 145, 193, 836, 1232
BspPI GGATC 4 cut(s) 79, 346, 758, 818
BspT107I GGYRCC 1 cut(s) 834
BsrDI GCAATG 2 cut(s) 770, 1124
BssECI CCNNGG 5 cut(s) 147, 344, 495, 976, 1017
BssMI GATC 9 cut(s) 71, 338, 367, 387, 763, 823, 847, 862, 1133
BssSI CACGAG 1 cut(s) 167
BssT1I CCWWGG 3 cut(s) 147, 344, 495
Bst2BI CACGAG 1 cut(s) 167
Bst2UI CCWGG 6 cut(s) 36, 614, 629, 977, 1019, 1105
Bst4CI ACNGT 3 cut(s) 53, 1025, 1235
Bst6I CTCTTC 2 cut(s) 796, 1143
BstAPI GCANNNNNTGC 1 cut(s) 609
BstC8I GCNNGC 2 cut(s) 265, 792
BstDEI CTNAG 3 cut(s) 259, 797, 1250
BstDSI CCRYGG 1 cut(s) 344
BstENI CCTNNNNNAGG 1 cut(s) 138
BstF5I GGATG 8 cut(s) 124, 130, 154, 280, 646, 1045, 1260, 1275
BstHHI GCGC 1 cut(s) 1290
BstKTI GATC 9 cut(s) 74, 341, 370, 390, 766, 826, 850, 865, 1136
BstMAI GTCTC 1 cut(s) 961
BstMBI GATC 9 cut(s) 71, 338, 367, 387, 763, 823, 847, 862, 1133
BstMWI GCNNNNNNNGC 2 cut(s) 609, 1114
BstNI CCWGG 6 cut(s) 36, 614, 629, 977, 1019, 1105
BstNSI RCATGY 2 cut(s) 592, 920
BstSCI CCNGG 6 cut(s) 34, 612, 627, 975, 1017, 1103
BstSFI CTRYAG 1 cut(s) 1109
BstSLI GKGCMC 2 cut(s) 12, 605
BstV1I GCAGC 4 cut(s) 361, 544, 1087, 1146
BstV2I GAAGAC 2 cut(s) 897, 954
BstXI CCANNNNNNTGG 1 cut(s) 502
Bsu15I ATCGAT 2 cut(s) 74, 161
BsuI GTATCC 1 cut(s) 409
BsuRI GGCC 5 cut(s) 57, 152, 309, 975, 981
BsuTUI ATCGAT 2 cut(s) 74, 161
BtgI CCRYGG 1 cut(s) 344
BtgZI GCGATG 1 cut(s) 282
BtrI CACGTC 1 cut(s) 606
BtsCI GGATG 8 cut(s) 124, 130, 154, 280, 646, 1045, 1260, 1275
BtsI GCAGTG 2 cut(s) 390, 542
BtsIMutI CAGTG 2 cut(s) 390, 542
Cac8I GCNNGC 2 cut(s) 265, 792
CaiI CAGNNNCTG 1 cut(s) 1159
CciI TCATGA 1 cut(s) 760
CfoI GCGC 1 cut(s) 1290
Cfr13I GGNCC 5 cut(s) 144, 151, 249, 979, 1231
ClaI ATCGAT 2 cut(s) 74, 161
Csp6I GTAC 1 cut(s) 300
CviQI GTAC 1 cut(s) 300
DdeI CTNAG 3 cut(s) 259, 797, 1250
DpnI GATC 9 cut(s) 73, 340, 369, 389, 765, 825, 849, 864, 1135
DpnII GATC 9 cut(s) 71, 338, 367, 387, 763, 823, 847, 862, 1133
EaeI YGGCCR 1 cut(s) 307
Eam1104I CTCTTC 2 cut(s) 796, 1143
EarI CTCTTC 2 cut(s) 796, 1143
Eco130I CCWWGG 3 cut(s) 147, 344, 495
Eco24I GRGCYC 1 cut(s) 796
Eco47I GGWCC 3 cut(s) 144, 249, 1231
Eco57I CTGAAG 2 cut(s) 336, 1124
EcoNI CCTNNNNNAGG 1 cut(s) 138
EcoO109I RGGNCCY 1 cut(s) 144
EcoRII CCWGG 6 cut(s) 34, 612, 627, 975, 1017, 1103
EcoT14I CCWWGG 3 cut(s) 147, 344, 495
EcoT22I ATGCAT 1 cut(s) 201
EcoT38I GRGCYC 1 cut(s) 796
ErhI CCWWGG 3 cut(s) 147, 344, 495
FaqI GGGAC 1 cut(s) 1244
FauI CCCGC 1 cut(s) 783
FbaI TGATCA 2 cut(s) 387, 862
Fnu4HI GCNGC 4 cut(s) 350, 533, 1101, 1160
FokI GGATG 8 cut(s) 111, 117, 141, 287, 653, 1032, 1267, 1282
FriOI GRGCYC 1 cut(s) 796
Fsp4HI GCNGC 4 cut(s) 350, 533, 1101, 1160
GlaI GCGC 1 cut(s) 1289
GluI GCNGC 4 cut(s) 350, 533, 1101, 1160
GsaI CCCAGC 1 cut(s) 1064
HaeIII GGCC 5 cut(s) 57, 152, 309, 975, 981
HhaI GCGC 1 cut(s) 1290
Hin6I GCGC 1 cut(s) 1288
HinP1I GCGC 1 cut(s) 1288
HindIII AAGCTT 2 cut(s) 380, 1274
HinfI GANTC 6 cut(s) 163, 742, 950, 1012, 1072, 1127
HphI GGTGA 3 cut(s) 333, 388, 422
Hpy166II GTNNAC 1 cut(s) 363
Hpy188I TCNGA 4 cut(s) 372, 387, 427, 828
Hpy188III TCNNGA 5 cut(s) 167, 761, 851, 866, 1131
Hpy8I GTNNAC 1 cut(s) 363
HpyAV CCTTC 6 cut(s) 62, 311, 328, 438, 825, 1306
HpyCH4III ACNGT 3 cut(s) 53, 1025, 1235
HpyCH4IV ACGT 1 cut(s) 605
HpyCH4V TGCA 4 cut(s) 199, 751, 775, 1162
HpyF10VI GCNNNNNNNGC 2 cut(s) 609, 1114
HpyF3I CTNAG 3 cut(s) 259, 797, 1250
HpySE526I ACGT 1 cut(s) 605
HspAI GCGC 1 cut(s) 1288
Ksp22I TGATCA 2 cut(s) 387, 862
Kzo9I GATC 9 cut(s) 71, 338, 367, 387, 763, 823, 847, 862, 1133
Lsp1109I GCAGC 4 cut(s) 361, 544, 1087, 1146
LweI GCATC 1 cut(s) 760
MaeII ACGT 1 cut(s) 605
MaeIII GTNAC 2 cut(s) 206, 1025
MalI GATC 9 cut(s) 73, 340, 369, 389, 765, 825, 849, 864, 1135
MboI GATC 9 cut(s) 71, 338, 367, 387, 763, 823, 847, 862, 1133
MboII GAAGA 8 cut(s) 343, 813, 869, 902, 959, 998, 1130, 1160
MhlI GDGCHC 3 cut(s) 12, 605, 796
MlsI TGGCCA 1 cut(s) 309
MluCI AATT 7 cut(s) 202, 548, 989, 1164, 1184, 1238, 1301
MluNI TGGCCA 1 cut(s) 309
MlyI GAGTC 1 cut(s) 944
Mox20I TGGCCA 1 cut(s) 309
Mph1103I ATGCAT 1 cut(s) 201
MscI TGGCCA 1 cut(s) 309
MseI TTAA 4 cut(s) 582, 692, 993, 1336
MslI CAYNNNNRTG 5 cut(s) 204, 221, 816, 840, 843
Msp20I TGGCCA 1 cut(s) 309
MspA1I CMGCKG 2 cut(s) 790, 1064
MspR9I CCNGG 6 cut(s) 36, 614, 629, 977, 1019, 1105
MvaI CCWGG 6 cut(s) 36, 614, 629, 977, 1019, 1105
MwoI GCNNNNNNNGC 2 cut(s) 609, 1114
NcoI CCATGG 1 cut(s) 344
NdeII GATC 9 cut(s) 71, 338, 367, 387, 763, 823, 847, 862, 1133
NlaIV GGNNCC 5 cut(s) 33, 145, 193, 836, 1232
NmeAIII GCCGAG 1 cut(s) 306
NmuCI GTSAC 1 cut(s) 206
NsiI ATGCAT 1 cut(s) 201
NspI RCATGY 2 cut(s) 592, 920
PagI TCATGA 1 cut(s) 760
PciI ACATGT 1 cut(s) 916
PfeI GAWTC 5 cut(s) 163, 742, 1012, 1072, 1127
PkrI GCNGC 4 cut(s) 351, 534, 1102, 1161
PleI GAGTC 1 cut(s) 944
PpsI GAGTC 1 cut(s) 944
PpuMI RGGWCCY 1 cut(s) 144
PscI ACATGT 1 cut(s) 916
Psp5II RGGWCCY 1 cut(s) 144
Psp6I CCWGG 6 cut(s) 34, 612, 627, 975, 1017, 1103
PspFI CCCAGC 1 cut(s) 1060
PspGI CCWGG 6 cut(s) 34, 612, 627, 975, 1017, 1103
PspN4I GGNNCC 5 cut(s) 33, 145, 193, 836, 1232
PspPI GGNCC 5 cut(s) 144, 151, 249, 979, 1231
PspPPI RGGWCCY 1 cut(s) 144
PsrI GAACNNNNNNTAC 2 cut(s) 1018, 1050
PstNI CAGNNNCTG 1 cut(s) 1159
PvuII CAGCTG 1 cut(s) 1064
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
RseI CAYNNNNRTG 5 cut(s) 204, 221, 816, 840, 843
SaqAI TTAA 4 cut(s) 582, 692, 993, 1336
SatI GCNGC 4 cut(s) 350, 533, 1101, 1160
Sau3AI GATC 9 cut(s) 71, 338, 367, 387, 763, 823, 847, 862, 1133
Sau96I GGNCC 5 cut(s) 144, 151, 249, 979, 1231
SchI GAGTC 1 cut(s) 944
ScrFI CCNGG 6 cut(s) 36, 614, 629, 977, 1019, 1105
SduI GDGCHC 3 cut(s) 12, 605, 796
SfaNI GCATC 1 cut(s) 760
SfcI CTRYAG 1 cut(s) 1109
SinI GGWCC 3 cut(s) 144, 249, 1231
SmiMI CAYNNNNRTG 5 cut(s) 204, 221, 816, 840, 843
SmlI CTYRAG 1 cut(s) 1277
SmoI CTYRAG 1 cut(s) 1277
Sse9I AATT 7 cut(s) 202, 548, 989, 1164, 1184, 1238, 1301
SsiI CCGC 2 cut(s) 530, 790
SspI AATATT 2 cut(s) 455, 690
StyD4I CCNGG 6 cut(s) 34, 612, 627, 975, 1017, 1103
StyI CCWWGG 3 cut(s) 147, 344, 495
TaaI ACNGT 3 cut(s) 53, 1025, 1235
TaiI ACGT 1 cut(s) 608
TaqI TCGA 4 cut(s) 74, 161, 921, 1132
TasI AATT 7 cut(s) 202, 548, 989, 1164, 1184, 1238, 1301
TfiI GAWTC 5 cut(s) 163, 742, 1012, 1072, 1127
Tru1I TTAA 4 cut(s) 582, 692, 993, 1336
Tru9I TTAA 4 cut(s) 582, 692, 993, 1336
TscAI CASTG 2 cut(s) 397, 542
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 4 cut(s) 349, 532, 1100, 1159
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 5 cut(s) 509, 903, 996, 1085, 1286
TspGWI ACGGA 2 cut(s) 305, 1324
TspRI CASTG 2 cut(s) 397, 542
VpaK11BI GGWCC 3 cut(s) 144, 249, 1231
XagI CCTNNNNNAGG 1 cut(s) 138
XapI RAATTY 3 cut(s) 548, 989, 1164
XceI RCATGY 2 cut(s) 592, 920
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
Zsp2I ATGCAT 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.