MD10G1024800.v1.1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0012453
Physical Location & Seq
Forward (+)
3092138 .. 3095682
3545 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1024800.v1.1.491

Sequence Viewer

Length: 1344 bp
ATGGAAGAGCATTTATCACAAGGAGCAGGAGGAGGTATGGTTCAGGCCGGGGCCTCGTATGGGGGGCTTGATTTGCAGGGGTCAATGAGAGGCCATCAGCAACCCCAACATCCACATACCATACACCATCACCATCCTCAACCTCGTCAAGGGTCGTTGGTCCACTCGCCGATTCCTGAAGGGTTTCCTCTCAAAATGGGAACCATGCATCACTGCGATCAAACCATTTCCATGGTGGATTACAGTAAGGGAGAGAGGTGCAAGAACTCGGCAAGCGATGAGGATGAGCCGAGTTATGCGGAAGAGGGAGATGGTCATGCTGAAGGTAGTAGAGGGAAGAAGGGGTCGCCATGGCAGCGTGTGAAGTGGACAGATCAAATGGTGAAGCTTCTGATCACTGCTGTGTCTTATATAGGTGAGGATACAAGTTCAGATTGTGGCGGTGGGGGAAGAAGGAAATATTCTGTCCTACAGAAGAAGGGAAAGTGGAAATCTGTTTCCAAGGTCATGGCAGAAAGAAGTTATCGTGTTTCTCCACAGCAGTGTGAGGATAAATTCAATGACCTTAACAAAAGGTATAAGAAACTTAATGATATGCTTGGGAGGGGCACTTCTTGCCAGGTTGTTGAGAACCCTGCGCTTTTGGATGTGATAGACTACCTAACGGAGAAAGAAAAAGATGATGTCAGGAAAATATTAAGCTCGAAGCACCTGTTTTATGAGGAGATGTGTTCTTATCATAATGGAAATCGTTTGCATCTGCCTCACGATCCAGCCTTGCAGAAATCTTTACATCGGGCTCTTAAAAGAGATGATCTTGACAATGATGATCTGAGAAGGCACCACCAAGATGATCTTGATGAAGATGATCAAGATATGGAAAATGAAGAGCATGATGACTTTGAGGAAAATAATGCTTTACGTGGAGATAACAGGGGAATATACATTTCAGAGGACTCTGTCAAGAGGTTGAGACAAGGCCAGGGCCGTGAAGATTTTAACTTTGGTAGTTCTTTGAACTCCCAAGACTGTAACAAAAGTTCTTATTTTCATCCCCAAATTCCTCAACCAGATATGAATCAAGTTTTACCTGATGGCACAAAAGCTGCTTGGTTACAGAAGCAGTGGGTTGAATCGCGTTCATTTCAGTTAGAAGAACAGAAGCTACAAATTCAAGTTGAGATGTTGGAATTGGAGAAGCAACGTTTGAAGTGGCAAAGATTTAGTAAGAAAAGGGACCGTGAACTGGAAAAGATGAGAATGGAAAATGACAGGATGAAACTTGAGAATGAGCGTATGGCATTAGAATTGAAACAGAAGGAAATGGGTGCCGGTTTTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

448

Amino Acids

51.55

Weight (kDa)

6.11

Isoelectric Point (pI)

47.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 120 - 210 8.1e-17 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21200 AT1G21200
fragaria_vesca FvH4_2g13860 FvH4_2g13860
malus_domestica MD05G1024300.v1.1 MD10G1024800.v1.1
prunus_persica Prupe.8G028500_v2.0.a1
pyrus_communis pycom05g01540 pycom10g01640
rosa_chinensis RchiOBHm_Chr6g0275551
rosa_laevigata RLG00000013457
rosa_multiflora Rmu_ssc0000162.1_g000014
rosa_roxburghii Rroxscaffold_7G00193190
rosa_rugosa Rorug06G0093900
rosa_samantha Rh6AG206400 Rh6BG209400 Rh6CG211500 Rh6DG202000
rosa_wichuraiana Rw6G017910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 840, 1328
AccII CGCG 1 cut(s) 1138
AciI CCGC 2 cut(s) 299, 441
AclI AACGTT 1 cut(s) 1204
AclWI GGATC 1 cut(s) 764
AcsI RAATTY 3 cut(s) 554, 1059, 1170
AcuI CTGAAG 2 cut(s) 198, 342
AfiI CCNNNNNNNGG 3 cut(s) 60, 149, 1246
AgsI TTSAA 6 cut(s) 559, 1018, 1133, 1175, 1210, 1312
AjnI CCWGG 2 cut(s) 618, 981
AleI CACNNNNGTG 2 cut(s) 401, 541
AloI GAACNNNNNNTCC 2 cut(s) 24, 56
AluBI AGCT 4 cut(s) 388, 702, 1106, 1165
AluI AGCT 4 cut(s) 388, 702, 1106, 1165
Alw26I GTCTC 1 cut(s) 967
AlwI GGATC 1 cut(s) 764
AoxI GGCC 5 cut(s) 45, 51, 91, 979, 985
ApeKI GCWGC 2 cut(s) 355, 1106
ApoI RAATTY 3 cut(s) 554, 1059, 1170
Asp700I GAANNNNTTC 1 cut(s) 183
AspLEI GCGC 1 cut(s) 640
AspS9I GGNCC 4 cut(s) 51, 160, 985, 1237
AsuC2I CCSGG 1 cut(s) 49
AsuHPI GGTGA 3 cut(s) 122, 394, 428
AvaII GGWCC 2 cut(s) 160, 1237
BaeGI GKGCMC 1 cut(s) 611
BanI GGYRCC 2 cut(s) 840, 1328
BanII GRGCYC 1 cut(s) 802
BbvI GCAGC 2 cut(s) 367, 1093
BccI CCATC 5 cut(s) 102, 135, 141, 305, 1088
BceAI ACGGC 1 cut(s) 972
BciT130I CCWGG 2 cut(s) 620, 983
BciVI GTATCC 1 cut(s) 415
BclI TGATCA 2 cut(s) 393, 868
BcnI CCSGG 1 cut(s) 49
BcoDI GTCTC 1 cut(s) 967
BfmI CTRYAG 1 cut(s) 470
BfuI GTATCC 1 cut(s) 415
BisI GCNGC 2 cut(s) 356, 1107
BlsI GCNGC 2 cut(s) 357, 1108
Bme1390I CCNGG 3 cut(s) 49, 620, 983
Bme18I GGWCC 2 cut(s) 160, 1237
BmgT120I GGNCC 4 cut(s) 51, 160, 985, 1237
BmiI GGNNCC 5 cut(s) 52, 202, 842, 1238, 1330
BmrFI CCNGG 3 cut(s) 49, 620, 983
BmsI GCATC 2 cut(s) 217, 766
BpuEI CTTGAG 1 cut(s) 1304
BpuMI CCSGG 1 cut(s) 49
BsaAI YACGTR 1 cut(s) 923
BsaBI GATNNNNATC 1 cut(s) 1077
BsaJI CCNNGG 5 cut(s) 48, 231, 350, 501, 982
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 149, 1246
Bse118I RCCGGY 1 cut(s) 1331
Bse1I ACTGG 1 cut(s) 1251
Bse8I GATNNNNATC 1 cut(s) 1077
BseBI CCWGG 2 cut(s) 620, 983
BseDI CCNNGG 5 cut(s) 48, 231, 350, 501, 982
BseGI GGATG 6 cut(s) 109, 133, 289, 652, 1051, 1281
BseJI GATNNNNATC 1 cut(s) 1077
BseLI CCNNNNNNNGG 3 cut(s) 60, 149, 1246
BseMII CTCAG 1 cut(s) 824
BseNI ACTGG 1 cut(s) 1251
BseRI GAGGAG 2 cut(s) 45, 737
BseSI GKGCMC 1 cut(s) 611
BseXI GCAGC 2 cut(s) 367, 1093
Bsh1236I CGCG 1 cut(s) 1138
BshFI GGCC 5 cut(s) 47, 53, 93, 981, 987
BshNI GGYRCC 2 cut(s) 840, 1328
BsiSI CCGG 2 cut(s) 48, 1332
BslFI GGGAC 1 cut(s) 1250
BslI CCNNNNNNNGG 3 cut(s) 60, 149, 1246
BsmAI GTCTC 1 cut(s) 967
BsmFI GGGAC 1 cut(s) 1250
BsnI GGCC 5 cut(s) 47, 53, 93, 981, 987
Bsp1286I GDGCHC 2 cut(s) 611, 802
Bsp143I GATC 8 cut(s) 217, 373, 393, 769, 814, 829, 853, 868
Bsp19I CCATGG 2 cut(s) 231, 350
BspACI CCGC 2 cut(s) 299, 441
BspANI GGCC 5 cut(s) 47, 53, 93, 981, 987
BspCNI CTCAG 1 cut(s) 825
BspFNI CGCG 1 cut(s) 1138
BspLI GGNNCC 5 cut(s) 52, 202, 842, 1238, 1330
BspPI GGATC 1 cut(s) 764
BspQI GCTCTTC 1 cut(s) 882
BspT107I GGYRCC 2 cut(s) 840, 1328
BsrFI RCCGGY 1 cut(s) 1331
BsrI ACTGG 1 cut(s) 1251
BssAI RCCGGY 1 cut(s) 1331
BssECI CCNNGG 5 cut(s) 48, 231, 350, 501, 982
BssMI GATC 8 cut(s) 217, 373, 393, 769, 814, 829, 853, 868
BssT1I CCWWGG 3 cut(s) 231, 350, 501
Bst2UI CCWGG 2 cut(s) 620, 983
Bst4CI ACNGT 3 cut(s) 245, 1031, 1241
Bst6I CTCTTC 2 cut(s) 297, 882
BstAPI GCANNNNNTGC 1 cut(s) 615
BstBAI YACGTR 1 cut(s) 923
BstC8I GCNNGC 1 cut(s) 274
BstDEI CTNAG 1 cut(s) 833
BstDSI CCRYGG 2 cut(s) 231, 350
BstENI CCTNNNNNAGG 1 cut(s) 147
BstF5I GGATG 6 cut(s) 109, 133, 289, 652, 1051, 1281
BstFNI CGCG 1 cut(s) 1138
BstHHI GCGC 1 cut(s) 640
BstKTI GATC 8 cut(s) 220, 376, 396, 772, 817, 832, 856, 871
BstMAI GTCTC 1 cut(s) 967
BstMBI GATC 8 cut(s) 217, 373, 393, 769, 814, 829, 853, 868
BstMWI GCNNNNNNNGC 3 cut(s) 73, 355, 615
BstNI CCWGG 2 cut(s) 620, 983
BstSCI CCNGG 3 cut(s) 47, 618, 981
BstSFI CTRYAG 1 cut(s) 470
BstSLI GKGCMC 1 cut(s) 611
BstUI CGCG 1 cut(s) 1138
BstV1I GCAGC 2 cut(s) 367, 1093
BstXI CCANNNNNNTGG 2 cut(s) 232, 508
BsuI GTATCC 1 cut(s) 415
BsuRI GGCC 5 cut(s) 47, 53, 93, 981, 987
BtgI CCRYGG 2 cut(s) 231, 350
BtgZI GCGATG 1 cut(s) 291
BtsCI GGATG 6 cut(s) 109, 133, 289, 652, 1051, 1281
BtsI GCAGTG 4 cut(s) 211, 396, 548, 1130
BtsIMutI CAGTG 4 cut(s) 211, 396, 548, 1130
Cac8I GCNNGC 1 cut(s) 274
CfoI GCGC 1 cut(s) 640
Cfr10I RCCGGY 1 cut(s) 1331
Cfr13I GGNCC 4 cut(s) 51, 160, 985, 1237
CviAII CATG 6 cut(s) 205, 232, 317, 351, 508, 893
DdeI CTNAG 1 cut(s) 833
DpnI GATC 8 cut(s) 219, 375, 395, 771, 816, 831, 855, 870
DpnII GATC 8 cut(s) 217, 373, 393, 769, 814, 829, 853, 868
Eam1104I CTCTTC 2 cut(s) 297, 882
EarI CTCTTC 2 cut(s) 297, 882
Eco130I CCWWGG 3 cut(s) 231, 350, 501
Eco24I GRGCYC 1 cut(s) 802
Eco47I GGWCC 2 cut(s) 160, 1237
Eco57I CTGAAG 2 cut(s) 198, 342
EcoNI CCTNNNNNAGG 1 cut(s) 147
EcoO109I RGGNCCY 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 618, 981
EcoT14I CCWWGG 3 cut(s) 231, 350, 501
EcoT22I ATGCAT 1 cut(s) 210
EcoT38I GRGCYC 1 cut(s) 802
ErhI CCWWGG 3 cut(s) 231, 350, 501
FaeI CATG 6 cut(s) 208, 235, 320, 354, 511, 896
FalI AAGNNNNNCTT 2 cut(s) 840, 872
FaqI GGGAC 1 cut(s) 1250
FatI CATG 6 cut(s) 204, 231, 316, 350, 507, 892
FbaI TGATCA 2 cut(s) 393, 868
Fnu4HI GCNGC 2 cut(s) 356, 1107
FokI GGATG 6 cut(s) 96, 120, 296, 659, 1038, 1288
FriOI GRGCYC 1 cut(s) 802
Fsp4HI GCNGC 2 cut(s) 356, 1107
GlaI GCGC 1 cut(s) 639
GluI GCNGC 2 cut(s) 356, 1107
HaeIII GGCC 5 cut(s) 47, 53, 93, 981, 987
HapII CCGG 2 cut(s) 48, 1332
HhaI GCGC 1 cut(s) 640
Hin1II CATG 6 cut(s) 208, 235, 320, 354, 511, 896
Hin6I GCGC 1 cut(s) 638
HinP1I GCGC 1 cut(s) 638
HindIII AAGCTT 1 cut(s) 386
HinfI GANTC 4 cut(s) 172, 956, 1078, 1133
HpaII CCGG 2 cut(s) 48, 1332
HphI GGTGA 3 cut(s) 122, 394, 428
Hpy166II GTNNAC 3 cut(s) 163, 369, 1244
Hpy188I TCNGA 4 cut(s) 393, 433, 834, 952
Hpy188III TCNNGA 7 cut(s) 176, 688, 767, 818, 857, 872, 964
Hpy8I GTNNAC 3 cut(s) 163, 369, 1244
HpyAV CCTTC 7 cut(s) 173, 317, 334, 447, 472, 831, 1312
HpyCH4III ACNGT 3 cut(s) 245, 1031, 1241
HpyCH4IV ACGT 2 cut(s) 922, 1204
HpyCH4V TGCA 5 cut(s) 76, 208, 261, 757, 781
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 355, 615
HpyF3I CTNAG 1 cut(s) 833
HpySE526I ACGT 2 cut(s) 922, 1204
Hsp92II CATG 6 cut(s) 208, 235, 320, 354, 511, 896
HspAI GCGC 1 cut(s) 638
Ksp22I TGATCA 2 cut(s) 393, 868
Kzo9I GATC 8 cut(s) 217, 373, 393, 769, 814, 829, 853, 868
LguI GCTCTTC 1 cut(s) 882
LmnI GCTCC 1 cut(s) 23
Lsp1109I GCAGC 2 cut(s) 367, 1093
LweI GCATC 2 cut(s) 217, 766
MaeII ACGT 2 cut(s) 922, 1204
MaeIII GTNAC 2 cut(s) 1031, 1113
MalI GATC 8 cut(s) 219, 375, 395, 771, 816, 831, 855, 870
MboI GATC 8 cut(s) 217, 373, 393, 769, 814, 829, 853, 868
MboII GAAGA 9 cut(s) 17, 314, 349, 462, 487, 875, 899, 1004, 1166
MhlI GDGCHC 2 cut(s) 611, 802
MluCI AATT 5 cut(s) 554, 1059, 1170, 1190, 1307
MlyI GAGTC 1 cut(s) 950
MmeI TCCRAC 1 cut(s) 1167
Mph1103I ATGCAT 1 cut(s) 210
MroXI GAANNNNTTC 1 cut(s) 183
MseI TTAA 6 cut(s) 567, 588, 698, 804, 999, 1342
MslI CAYNNNNRTG 4 cut(s) 230, 401, 541, 849
MspI CCGG 2 cut(s) 48, 1332
MspR9I CCNGG 3 cut(s) 49, 620, 983
MvaI CCWGG 2 cut(s) 620, 983
MvnI CGCG 1 cut(s) 1138
MwoI GCNNNNNNNGC 3 cut(s) 73, 355, 615
NciI CCSGG 1 cut(s) 49
NcoI CCATGG 2 cut(s) 231, 350
NdeII GATC 8 cut(s) 217, 373, 393, 769, 814, 829, 853, 868
NlaIII CATG 6 cut(s) 208, 235, 320, 354, 511, 896
NlaIV GGNNCC 5 cut(s) 52, 202, 842, 1238, 1330
NmeAIII GCCGAG 2 cut(s) 248, 315
NsiI ATGCAT 1 cut(s) 210
OliI CACNNNNGTG 2 cut(s) 401, 541
PciSI GCTCTTC 1 cut(s) 882
PdmI GAANNNNTTC 1 cut(s) 183
PfeI GAWTC 3 cut(s) 172, 1078, 1133
PflFI GACNNNGTC 1 cut(s) 959
PkrI GCNGC 2 cut(s) 357, 1108
PleI GAGTC 1 cut(s) 950
PpsI GAGTC 1 cut(s) 950
Ppu21I YACGTR 1 cut(s) 923
Psp1406I AACGTT 1 cut(s) 1204
Psp6I CCWGG 2 cut(s) 618, 981
PspGI CCWGG 2 cut(s) 618, 981
PspN4I GGNNCC 5 cut(s) 52, 202, 842, 1238, 1330
PspPI GGNCC 4 cut(s) 51, 160, 985, 1237
PsrI GAACNNNNNNTAC 4 cut(s) 1024, 1056, 1149, 1181
PsyI GACNNNGTC 1 cut(s) 959
RseI CAYNNNNRTG 4 cut(s) 230, 401, 541, 849
SapI GCTCTTC 1 cut(s) 882
SaqAI TTAA 6 cut(s) 567, 588, 698, 804, 999, 1342
SatI GCNGC 2 cut(s) 356, 1107
Sau3AI GATC 8 cut(s) 217, 373, 393, 769, 814, 829, 853, 868
Sau96I GGNCC 4 cut(s) 51, 160, 985, 1237
SchI GAGTC 1 cut(s) 950
ScrFI CCNGG 3 cut(s) 49, 620, 983
SduI GDGCHC 2 cut(s) 611, 802
SfaNI GCATC 2 cut(s) 217, 766
SfcI CTRYAG 1 cut(s) 470
SinI GGWCC 2 cut(s) 160, 1237
SmiMI CAYNNNNRTG 4 cut(s) 230, 401, 541, 849
SmlI CTYRAG 1 cut(s) 1283
SmoI CTYRAG 1 cut(s) 1283
Sse9I AATT 5 cut(s) 554, 1059, 1170, 1190, 1307
SsiI CCGC 2 cut(s) 299, 441
SspI AATATT 2 cut(s) 461, 696
StyD4I CCNGG 3 cut(s) 47, 618, 981
StyI CCWWGG 3 cut(s) 231, 350, 501
TaaI ACNGT 3 cut(s) 245, 1031, 1241
TaiI ACGT 2 cut(s) 925, 1207
TaqI TCGA 1 cut(s) 704
TasI AATT 5 cut(s) 554, 1059, 1170, 1190, 1307
TfiI GAWTC 3 cut(s) 172, 1078, 1133
Tru1I TTAA 6 cut(s) 567, 588, 698, 804, 999, 1342
Tru9I TTAA 6 cut(s) 567, 588, 698, 804, 999, 1342
TscAI CASTG 4 cut(s) 218, 403, 548, 1130
TseI GCWGC 2 cut(s) 355, 1106
TspDTI ATGAA 6 cut(s) 876, 900, 1040, 1091, 1131, 1292
TspGWI ACGGA 1 cut(s) 680
TspRI CASTG 4 cut(s) 218, 403, 548, 1130
Tth111I GACNNNGTC 1 cut(s) 959
VpaK11BI GGWCC 2 cut(s) 160, 1237
XagI CCTNNNNNAGG 1 cut(s) 147
XapI RAATTY 3 cut(s) 554, 1059, 1170
XcmI CCANNNNNNNNNTGG 1 cut(s) 232
XmnI GAANNNNTTC 1 cut(s) 183
Zsp2I ATGCAT 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.