RLG00000013457
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0012453
Physical Location & Seq
Forward (+)
31725099 .. 31726448
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013457

Sequence Viewer

Length: 1350 bp
ATGGAAGGGCATTTGTCACAAGGAGGTAGGATTCCTGGTGGGGGAAGCTATGTTGGTCTTGACTTGCAAGGGTCAATGAGGGCTCATCATCAGACACAACACCCACACACCCTACACCAGCAACATCATCCGATTTCTCGTCAAGGGTCCATGGTGCACCCCTCGATTCACGAGGGTTTTCCTGTCAAAATGGGAACCATGCATAACTGTGATCGGACCCTTTCCATGGTTGATTACAATAAGGGAGAGAAATGCAAGAACTCGGCAAGCGATGAGGATGAGCCAAGTTATACAGAGGAGGGTGTTGATAGTCATATTGAAGCACAGAGAGGGAAGAAGGGCTCTCCCTGGCAGCGTGTGAAGTGGACAGATAAGATGGTGAGGCTTCTGATTACTGCAGTATCTTATATCGGTGAGGATATTGGTTCAGATTGTGGTGGCGGGGGAAGAAGGAAGTTTTCTGCTCTACAGAAAAAGGGAAAGTGGAAATCTGTTTCCAAGGTCATGGCAGAAAGGGGTTATCATGTTTCTCCACAGCAGTGTGAGGATAAATTCAATGACCTTAATAAAAGGTATAAGAAACTTAACGACATGCTGGGGAGGGGCACTTCTTGCCAGGTTGTTGAGAACCCTGCACTTTTGGATGTGATAGATTACTTAACAGAGAAAGAAAAAGATGATGTTAGGAAAATATTAAGTTCAAAGCACCTGTTTTATGAAGAGATGTGTTCCTACCATAATGGGAATCGTTTACATCTGCCTCACGATCCAGCATTGCAGCATTCCTTGCAGGAGGCTCTTAGAAATAGAGATGATCATGACACTGATGATCTGAGGAGGCATCACCATGATGATCTTGATGAAGATGATCAAGATATGGAAACTGATGAGCGTGATGATTTTGAGGAAAATAATGCTTCACATGGTGATAACAGGGGAATATTTGGCGGGTTAGGGGACTCTGTGAAGAGGTTGAGGCAAGGTCAAGGCCGTGAAGACTTTAACTTTGGTGGTTCTTTAAATGCCCAAGATTGTAACCAAAGTTCTTCTTATTCTCATCCCCAAATTGCCCAAGGTGATTTGAATCAAGTCTTACCTGATAGCACAAAAGCTGCTTGGTTACAGAAGCAGTGGATTGAATCCCGATGTGTTCAGTTAGAAGAACAGAAGCTACAAATTCAAGTTGAGATGTTAGAATTGGAGAAACAACGTCTCAAGTGGCAAAAATTTAGCAAGAAAAGGGACCGTGAACTGGAAAAGCTGAAGATGGAAAATGAGAGAATGAAGCTTGAGAATGAGCGTATGGCATTAGAATTGAAAGGGAAGGAAATGGGTGCTGGATTTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

450

Amino Acids

51.45

Weight (kDa)

6.19

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 119 - 209 1.6e-17 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21200 AT1G21200
fragaria_vesca FvH4_2g13860 FvH4_2g13860
malus_domestica MD05G1024300.v1.1 MD10G1024800.v1.1
prunus_persica Prupe.8G028500_v2.0.a1
pyrus_communis pycom05g01540 pycom10g01640
rosa_chinensis RchiOBHm_Chr6g0275551
rosa_laevigata RLG00000013457
rosa_multiflora Rmu_ssc0000162.1_g000014
rosa_roxburghii Rroxscaffold_7G00193190
rosa_rugosa Rorug06G0093900
rosa_samantha Rh6AG206400 Rh6BG209400 Rh6CG211500 Rh6DG202000
rosa_wichuraiana Rw6G017910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 441, 948
AclWI GGATC 1 cut(s) 761
AcsI RAATTY 3 cut(s) 551, 1176, 1226
AcuI CTGAAG 1 cut(s) 1283
AdeI CACNNNGTG 1 cut(s) 926
AfiI CCNNNNNNNGG 3 cut(s) 41, 226, 1252
AgsI TTSAA 7 cut(s) 320, 556, 702, 1084, 1139, 1181, 1318
AjnI CCWGG 3 cut(s) 34, 347, 615
AleI CACNNNNGTG 1 cut(s) 538
AluBI AGCT 6 cut(s) 48, 1112, 1171, 1261, 1288, 1347
AluI AGCT 6 cut(s) 48, 1112, 1171, 1261, 1288, 1347
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 1 cut(s) 1217
Alw44I GTGCAC 1 cut(s) 155
AlwI GGATC 1 cut(s) 761
AoxI GGCC 1 cut(s) 988
ApaLI GTGCAC 1 cut(s) 155
ApeKI GCWGC 3 cut(s) 352, 778, 1112
ApoI RAATTY 3 cut(s) 551, 1176, 1226
ArsI GACNNNNNNTTYG 2 cut(s) 989, 1021
AspS9I GGNCC 3 cut(s) 147, 216, 1243
AsuHPI GGTGA 5 cut(s) 391, 425, 836, 938, 1088
AvaII GGWCC 3 cut(s) 147, 216, 1243
BaeGI GKGCMC 2 cut(s) 159, 608
BaeI ACNNNNGTAYC 2 cut(s) 384, 417
BanII GRGCYC 2 cut(s) 85, 344
BauI CACGAG 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 1002
Bbv12I GWGCWC 1 cut(s) 159
BbvI GCAGC 3 cut(s) 364, 790, 1099
BccI CCATC 2 cut(s) 370, 1261
BceAI ACGGC 1 cut(s) 975
BciT130I CCWGG 3 cut(s) 36, 349, 617
BclI TGATCA 2 cut(s) 814, 868
BcoDI GTCTC 1 cut(s) 1217
BfmI CTRYAG 2 cut(s) 396, 467
BisI GCNGC 3 cut(s) 353, 779, 1113
BlsI GCNGC 3 cut(s) 354, 780, 1114
Bme1390I CCNGG 3 cut(s) 36, 349, 617
Bme18I GGWCC 3 cut(s) 147, 216, 1243
BmgT120I GGNCC 3 cut(s) 147, 216, 1243
BmiI GGNNCC 4 cut(s) 148, 196, 218, 1244
BmrFI CCNGG 3 cut(s) 36, 349, 617
BmsI GCATC 1 cut(s) 850
BpiI GAAGAC 1 cut(s) 1002
BpuEI CTTGAG 2 cut(s) 1199, 1310
BsaBI GATNNNNATC 1 cut(s) 1083
BsaJI CCNNGG 5 cut(s) 150, 225, 347, 498, 1072
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 226, 1252
Bse1I ACTGG 1 cut(s) 1257
Bse3DI GCAATG 1 cut(s) 773
Bse8I GATNNNNATC 1 cut(s) 1083
BseBI CCWGG 3 cut(s) 36, 349, 617
BseDI CCNNGG 5 cut(s) 150, 225, 347, 498, 1072
BseGI GGATG 4 cut(s) 127, 283, 649, 1057
BseJI GATNNNNATC 1 cut(s) 1083
BseLI CCNNNNNNNGG 3 cut(s) 41, 226, 1252
BseMI GCAATG 1 cut(s) 773
BseMII CTCAG 1 cut(s) 824
BseNI ACTGG 1 cut(s) 1257
BseRI GAGGAG 2 cut(s) 311, 850
BseSI GKGCMC 2 cut(s) 159, 608
BseXI GCAGC 3 cut(s) 364, 790, 1099
BseYI CCCAGC 1 cut(s) 595
BsgI GTGCAG 1 cut(s) 618
BshFI GGCC 1 cut(s) 990
BsiHKAI GWGCWC 1 cut(s) 159
BslFI GGGAC 2 cut(s) 971, 1256
BslI CCNNNNNNNGG 3 cut(s) 41, 226, 1252
BsmAI GTCTC 1 cut(s) 1217
BsmBI CGTCTC 1 cut(s) 1217
BsmFI GGGAC 2 cut(s) 971, 1256
BsmI GAATGC 1 cut(s) 781
BsnI GGCC 1 cut(s) 990
Bsp1286I GDGCHC 4 cut(s) 85, 159, 344, 608
Bsp143I GATC 6 cut(s) 211, 766, 814, 829, 853, 868
Bsp19I CCATGG 2 cut(s) 150, 225
BspACI CCGC 2 cut(s) 441, 948
BspANI GGCC 1 cut(s) 990
BspCNI CTCAG 1 cut(s) 825
BspHI TCATGA 1 cut(s) 817
BspLI GGNNCC 4 cut(s) 148, 196, 218, 1244
BspMAI CTGCAG 1 cut(s) 400
BspPI GGATC 1 cut(s) 761
BsrDI GCAATG 1 cut(s) 773
BsrI ACTGG 1 cut(s) 1257
BssECI CCNNGG 5 cut(s) 150, 225, 347, 498, 1072
BssMI GATC 6 cut(s) 211, 766, 814, 829, 853, 868
BssSI CACGAG 1 cut(s) 170
BssT1I CCWWGG 4 cut(s) 150, 225, 498, 1072
Bst2BI CACGAG 1 cut(s) 170
Bst2UI CCWGG 3 cut(s) 36, 349, 617
Bst4CI ACNGT 2 cut(s) 209, 1247
Bst6I CTCTTC 2 cut(s) 714, 962
BstAPI GCANNNNNTGC 2 cut(s) 612, 787
BstC8I GCNNGC 1 cut(s) 268
BstDEI CTNAG 2 cut(s) 800, 833
BstDSI CCRYGG 2 cut(s) 150, 225
BstF5I GGATG 4 cut(s) 127, 283, 649, 1057
BstKTI GATC 6 cut(s) 214, 769, 817, 832, 856, 871
BstMAI GTCTC 1 cut(s) 1217
BstMBI GATC 6 cut(s) 211, 766, 814, 829, 853, 868
BstMWI GCNNNNNNNGC 2 cut(s) 612, 787
BstNI CCWGG 3 cut(s) 36, 349, 617
BstNSI RCATGY 1 cut(s) 595
BstSCI CCNGG 3 cut(s) 34, 347, 615
BstSFI CTRYAG 2 cut(s) 396, 467
BstSLI GKGCMC 2 cut(s) 159, 608
BstV1I GCAGC 3 cut(s) 364, 790, 1099
BstV2I GAAGAC 1 cut(s) 1002
BstXI CCANNNNNNTGG 1 cut(s) 505
BsuRI GGCC 1 cut(s) 990
BtgI CCRYGG 2 cut(s) 150, 225
BtgZI GCGATG 1 cut(s) 285
BtsCI GGATG 4 cut(s) 127, 283, 649, 1057
BtsI GCAGTG 2 cut(s) 545, 1136
BtsIMutI CAGTG 3 cut(s) 545, 822, 1136
Cac8I GCNNGC 1 cut(s) 268
CciI TCATGA 1 cut(s) 817
Cfr13I GGNCC 3 cut(s) 147, 216, 1243
CviAII CATG 9 cut(s) 151, 199, 226, 505, 524, 592, 818, 848, 923
DdeI CTNAG 2 cut(s) 800, 833
DpnI GATC 6 cut(s) 213, 768, 816, 831, 855, 870
DpnII GATC 6 cut(s) 211, 766, 814, 829, 853, 868
DraI TTTAAA 1 cut(s) 1020
DraIII CACNNNGTG 1 cut(s) 926
Eam1104I CTCTTC 2 cut(s) 714, 962
EarI CTCTTC 2 cut(s) 714, 962
Eco130I CCWWGG 4 cut(s) 150, 225, 498, 1072
Eco24I GRGCYC 2 cut(s) 85, 344
Eco47I GGWCC 3 cut(s) 147, 216, 1243
Eco57I CTGAAG 1 cut(s) 1283
EcoRII CCWGG 3 cut(s) 34, 347, 615
EcoT14I CCWWGG 4 cut(s) 150, 225, 498, 1072
EcoT22I ATGCAT 1 cut(s) 204
EcoT38I GRGCYC 2 cut(s) 85, 344
ErhI CCWWGG 4 cut(s) 150, 225, 498, 1072
Esp3I CGTCTC 1 cut(s) 1217
FaeI CATG 9 cut(s) 154, 202, 229, 508, 527, 595, 821, 851, 926
FalI AAGNNNNNCTT 2 cut(s) 1033, 1065
FaqI GGGAC 2 cut(s) 971, 1256
FatI CATG 9 cut(s) 150, 198, 225, 504, 523, 591, 817, 847, 922
FauI CCCGC 2 cut(s) 434, 941
FbaI TGATCA 2 cut(s) 814, 868
Fnu4HI GCNGC 3 cut(s) 353, 779, 1113
FokI GGATG 4 cut(s) 114, 290, 656, 1044
FriOI GRGCYC 2 cut(s) 85, 344
Fsp4HI GCNGC 3 cut(s) 353, 779, 1113
GluI GCNGC 3 cut(s) 353, 779, 1113
GsaI CCCAGC 1 cut(s) 599
HaeIII GGCC 1 cut(s) 990
Hin1II CATG 9 cut(s) 154, 202, 229, 508, 527, 595, 821, 851, 926
HindIII AAGCTT 1 cut(s) 1286
HinfI GANTC 6 cut(s) 31, 166, 745, 959, 1084, 1139
HphI GGTGA 5 cut(s) 391, 425, 836, 938, 1088
Hpy166II GTNNAC 4 cut(s) 157, 366, 752, 1250
Hpy188I TCNGA 6 cut(s) 93, 132, 216, 390, 430, 834
Hpy188III TCNNGA 7 cut(s) 59, 170, 764, 818, 857, 872, 1143
Hpy8I GTNNAC 4 cut(s) 157, 366, 752, 1250
HpyAV CCTTC 3 cut(s) 331, 444, 1318
HpyCH4III ACNGT 2 cut(s) 209, 1247
HpyCH4IV ACGT 1 cut(s) 1210
HpyCH4V TGCA 8 cut(s) 67, 157, 202, 255, 398, 635, 778, 790
HpyF10VI GCNNNNNNNGC 2 cut(s) 612, 787
HpyF3I CTNAG 2 cut(s) 800, 833
HpySE526I ACGT 1 cut(s) 1210
Hsp92II CATG 9 cut(s) 154, 202, 229, 508, 527, 595, 821, 851, 926
Ksp22I TGATCA 2 cut(s) 814, 868
Kzo9I GATC 6 cut(s) 211, 766, 814, 829, 853, 868
Lsp1109I GCAGC 3 cut(s) 364, 790, 1099
LweI GCATC 1 cut(s) 850
MaeII ACGT 1 cut(s) 1210
MaeIII GTNAC 3 cut(s) 15, 1034, 1119
MalI GATC 6 cut(s) 213, 768, 816, 831, 855, 870
MboI GATC 6 cut(s) 211, 766, 814, 829, 853, 868
MboII GAAGA 9 cut(s) 346, 459, 731, 875, 979, 1007, 1038, 1172, 1276
MhlI GDGCHC 4 cut(s) 85, 159, 344, 608
MluCI AATT 6 cut(s) 551, 1065, 1176, 1196, 1226, 1313
MlyI GAGTC 1 cut(s) 953
Mph1103I ATGCAT 1 cut(s) 204
MseI TTAA 6 cut(s) 564, 585, 659, 695, 1002, 1019
MslI CAYNNNNRTG 4 cut(s) 207, 538, 846, 849
MspR9I CCNGG 3 cut(s) 36, 349, 617
Mva1269I GAATGC 1 cut(s) 781
MvaI CCWGG 3 cut(s) 36, 349, 617
MwoI GCNNNNNNNGC 2 cut(s) 612, 787
NcoI CCATGG 2 cut(s) 150, 225
NdeII GATC 6 cut(s) 211, 766, 814, 829, 853, 868
NlaIII CATG 9 cut(s) 154, 202, 229, 508, 527, 595, 821, 851, 926
NlaIV GGNNCC 4 cut(s) 148, 196, 218, 1244
NmeAIII GCCGAG 1 cut(s) 242
NmuCI GTSAC 1 cut(s) 15
NsiI ATGCAT 1 cut(s) 204
NspI RCATGY 1 cut(s) 595
OliI CACNNNNGTG 1 cut(s) 538
PagI TCATGA 1 cut(s) 817
PctI GAATGC 1 cut(s) 781
PfeI GAWTC 5 cut(s) 31, 166, 745, 1084, 1139
PkrI GCNGC 3 cut(s) 354, 780, 1114
PleI GAGTC 1 cut(s) 953
PpsI GAGTC 1 cut(s) 953
Psp6I CCWGG 3 cut(s) 34, 347, 615
PspFI CCCAGC 1 cut(s) 595
PspGI CCWGG 3 cut(s) 34, 347, 615
PspN4I GGNNCC 4 cut(s) 148, 196, 218, 1244
PspPI GGNCC 3 cut(s) 147, 216, 1243
PsrI GAACNNNNNNTAC 4 cut(s) 1027, 1059, 1155, 1187
PstI CTGCAG 1 cut(s) 400
RseI CAYNNNNRTG 4 cut(s) 207, 538, 846, 849
SaqAI TTAA 6 cut(s) 564, 585, 659, 695, 1002, 1019
SatI GCNGC 3 cut(s) 353, 779, 1113
Sau3AI GATC 6 cut(s) 211, 766, 814, 829, 853, 868
Sau96I GGNCC 3 cut(s) 147, 216, 1243
SchI GAGTC 1 cut(s) 953
ScrFI CCNGG 3 cut(s) 36, 349, 617
SduI GDGCHC 4 cut(s) 85, 159, 344, 608
SfaNI GCATC 1 cut(s) 850
SfcI CTRYAG 2 cut(s) 396, 467
SinI GGWCC 3 cut(s) 147, 216, 1243
SmiMI CAYNNNNRTG 4 cut(s) 207, 538, 846, 849
SmlI CTYRAG 2 cut(s) 1214, 1289
SmoI CTYRAG 2 cut(s) 1214, 1289
Sse9I AATT 6 cut(s) 551, 1065, 1176, 1196, 1226, 1313
SsiI CCGC 2 cut(s) 441, 948
SspI AATATT 2 cut(s) 693, 942
StyD4I CCNGG 3 cut(s) 34, 347, 615
StyI CCWWGG 4 cut(s) 150, 225, 498, 1072
TaaI ACNGT 2 cut(s) 209, 1247
TaiI ACGT 1 cut(s) 1213
TaqI TCGA 1 cut(s) 164
TasI AATT 6 cut(s) 551, 1065, 1176, 1196, 1226, 1313
TfiI GAWTC 5 cut(s) 31, 166, 745, 1084, 1139
Tru1I TTAA 6 cut(s) 564, 585, 659, 695, 1002, 1019
Tru9I TTAA 6 cut(s) 564, 585, 659, 695, 1002, 1019
TscAI CASTG 3 cut(s) 545, 829, 1136
TseFI GTSAC 1 cut(s) 15
TseI GCWGC 3 cut(s) 352, 778, 1112
Tsp45I GTSAC 1 cut(s) 15
TspDTI ATGAA 3 cut(s) 732, 876, 1298
TspRI CASTG 3 cut(s) 545, 829, 1136
VneI GTGCAC 1 cut(s) 155
VpaK11BI GGWCC 3 cut(s) 147, 216, 1243
XapI RAATTY 3 cut(s) 551, 1176, 1226
XceI RCATGY 1 cut(s) 595
Zsp2I ATGCAT 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.