AT1G21930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007969
Physical Location & Seq
Forward (+)
7712819 .. 7714459
1641 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G21930.1

Sequence Viewer

Length: 297 bp
ATGGGAAGTCAGGAGAATGTGAAACACCTCGAGGAATGCACTGTTTCCAATGCATTAGGGACATGGGTATTCTCAGTCCTAGGCGCATTGGTTGCAATCCCGGTAGGCATCAAACGCAAGTCTCTTGGGCCACTCGTGTTCTTTGGCACAACCGGAACAATGCTCGACATCATCATTGGTGTAAGTCAATGCGAGAGAGAACACGCAGAACACCAAATGAAGTTACTCCAAGACTCTCAAAATGCCACAACAACAACCACCAACACAGAGACTGAAGAAAGCTCTTCCATGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.57

Weight (kDa)

4.98

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 29
AcuI CTGAAG 1 cut(s) 294
AluBI AGCT 1 cut(s) 282
AluI AGCT 1 cut(s) 282
Alw26I GTCTC 2 cut(s) 126, 263
AlwNI CAGNNNCTG 1 cut(s) 272
Ama87I CYCGRG 1 cut(s) 29
AoxI GGCC 1 cut(s) 128
AspA2I CCTAGG 1 cut(s) 79
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 128
AsuC2I CCSGG 1 cut(s) 101
AvaI CYCGRG 1 cut(s) 29
AvrII CCTAGG 1 cut(s) 79
BauI CACGAG 1 cut(s) 134
BcnI CCSGG 1 cut(s) 101
BcoDI GTCTC 2 cut(s) 126, 263
BfaI CTAG 1 cut(s) 80
BlnI CCTAGG 1 cut(s) 79
Bme1390I CCNGG 1 cut(s) 101
BmeT110I CYCGRG 1 cut(s) 29
BmgT120I GGNCC 1 cut(s) 128
BmrFI CCNGG 1 cut(s) 101
BmsI GCATC 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 79
BsaWI WCCGGW 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 79
BseMII CTCAG 1 cut(s) 87
BshFI GGCC 1 cut(s) 130
BsiHKCI CYCGRG 1 cut(s) 29
BsiSI CCGG 2 cut(s) 101, 153
BslFI GGGAC 1 cut(s) 73
BsmAI GTCTC 2 cut(s) 126, 263
BsmFI GGGAC 1 cut(s) 73
BsmI GAATGC 1 cut(s) 41
BsnI GGCC 1 cut(s) 130
BsoBI CYCGRG 1 cut(s) 29
BspANI GGCC 1 cut(s) 130
BspCNI CTCAG 1 cut(s) 86
BspQI GCTCTTC 1 cut(s) 289
BssECI CCNNGG 1 cut(s) 79
BssSI CACGAG 1 cut(s) 134
BssT1I CCWWGG 1 cut(s) 79
Bst2BI CACGAG 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 1 cut(s) 289
BstAPI GCANNNNNTGC 1 cut(s) 92
BstDEI CTNAG 1 cut(s) 73
BstHHI GCGC 1 cut(s) 86
BstMAI GTCTC 2 cut(s) 126, 263
BstMWI GCNNNNNNNGC 2 cut(s) 92, 114
BstSCI CCNGG 1 cut(s) 99
BsuRI GGCC 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 39
CaiI CAGNNNCTG 1 cut(s) 272
CfoI GCGC 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 128
CviAII CATG 2 cut(s) 63, 289
CviJI RGCY 2 cut(s) 130, 282
CviKI_1 RGCY 2 cut(s) 130, 282
DdeI CTNAG 1 cut(s) 73
Eam1104I CTCTTC 1 cut(s) 289
EarI CTCTTC 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 294
Eco88I CYCGRG 1 cut(s) 29
EcoT14I CCWWGG 1 cut(s) 79
EcoT22I ATGCAT 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 2 cut(s) 66, 292
FaiI YATR 2 cut(s) 64, 290
FaqI GGGAC 1 cut(s) 73
FatI CATG 2 cut(s) 62, 288
FspBI CTAG 1 cut(s) 80
GlaI GCGC 1 cut(s) 85
HaeIII GGCC 1 cut(s) 130
HapII CCGG 2 cut(s) 101, 153
HhaI GCGC 1 cut(s) 86
Hin1II CATG 2 cut(s) 66, 292
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HinfI GANTC 1 cut(s) 233
HpaII CCGG 2 cut(s) 101, 153
Hpy188III TCNNGA 1 cut(s) 11
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4V TGCA 3 cut(s) 39, 53, 95
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 114
HpyF3I CTNAG 1 cut(s) 73
Hsp92II CATG 2 cut(s) 66, 292
HspAI GCGC 1 cut(s) 84
LguI GCTCTTC 1 cut(s) 289
LpnPI CCDG 2 cut(s) 114, 166
LweI GCATC 1 cut(s) 117
MaeI CTAG 1 cut(s) 80
MaeIII GTNAC 1 cut(s) 222
MboII GAAGA 2 cut(s) 276, 287
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 2 cut(s) 25, 38
Mph1103I ATGCAT 1 cut(s) 55
MspI CCGG 2 cut(s) 101, 153
MspR9I CCNGG 1 cut(s) 101
Mva1269I GAATGC 1 cut(s) 41
MwoI GCNNNNNNNGC 2 cut(s) 92, 114
NciI CCSGG 1 cut(s) 101
NlaIII CATG 2 cut(s) 66, 292
NsiI ATGCAT 1 cut(s) 55
PaeR7I CTCGAG 1 cut(s) 29
PciSI GCTCTTC 1 cut(s) 289
PctI GAATGC 1 cut(s) 41
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PspPI GGNCC 1 cut(s) 128
PspXI VCTCGAGB 1 cut(s) 29
PstNI CAGNNNCTG 1 cut(s) 272
SapI GCTCTTC 1 cut(s) 289
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 101
SetI ASST 2 cut(s) 30, 284
SfaNI GCATC 1 cut(s) 117
Sfr274I CTCGAG 1 cut(s) 29
SlaI CTCGAG 1 cut(s) 29
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
SspMI CTAG 1 cut(s) 80
StyD4I CCNGG 1 cut(s) 99
StyI CCWWGG 1 cut(s) 79
TaaI ACNGT 1 cut(s) 43
TaqI TCGA 2 cut(s) 30, 165
TscAI CASTG 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 233
TspRI CASTG 1 cut(s) 46
XhoI CTCGAG 1 cut(s) 29
XmaJI CCTAGG 1 cut(s) 79
XspI CTAG 1 cut(s) 80
Zsp2I ATGCAT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.