AT3G42150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007969
Physical Location & Seq
Forward (+)
14309275 .. 14311638
2364 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G42150.3

Sequence Viewer

Length: 303 bp
ATGGGAAGTCAGAAGAATGTGAAACACCTCGAGGAATGCACTGTTTCCAATGCATTGGGAACTTGGGTATTCTCAGTCCTAGGCGCATTGGTTGCAATCCCGGTAGGCATCAAACGCAAGTCTCTAGGTCCACTTGTGTTCTTCGGCACAACCGGAACAATGCTCGACATTATCATTGGTGTGAGTCAATGCGAGAGAGAACACGCAGAACACCAAACGAAGTTACTCCAAGACTCTCAAAATGCCACAACAACAACAACAACCACCAACACAGAGACTGAGGATAGCTCTTCCATGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.73

Weight (kDa)

5.47

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 29
AluBI AGCT 1 cut(s) 288
AluI AGCT 1 cut(s) 288
Alw26I GTCTC 2 cut(s) 126, 269
AlwNI CAGNNNCTG 1 cut(s) 278
Ama87I CYCGRG 1 cut(s) 29
AspA2I CCTAGG 1 cut(s) 79
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 128
AsuC2I CCSGG 1 cut(s) 101
AvaI CYCGRG 1 cut(s) 29
AvaII GGWCC 1 cut(s) 128
AvrII CCTAGG 1 cut(s) 79
BcnI CCSGG 1 cut(s) 101
BcoDI GTCTC 2 cut(s) 126, 269
BfaI CTAG 2 cut(s) 80, 125
BlnI CCTAGG 1 cut(s) 79
Bme1390I CCNGG 1 cut(s) 101
Bme18I GGWCC 1 cut(s) 128
BmeT110I CYCGRG 1 cut(s) 29
BmgT120I GGNCC 1 cut(s) 128
BmrFI CCNGG 1 cut(s) 101
BmsI GCATC 1 cut(s) 117
BplI GAGNNNNNCTC 1 cut(s) 272
BpuMI CCSGG 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 79
BsaWI WCCGGW 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 79
BseMII CTCAG 2 cut(s) 87, 270
BsiHKCI CYCGRG 1 cut(s) 29
BsiSI CCGG 2 cut(s) 101, 153
BsmAI GTCTC 2 cut(s) 126, 269
BsmI GAATGC 1 cut(s) 41
BsoBI CYCGRG 1 cut(s) 29
BspCNI CTCAG 2 cut(s) 86, 271
BspQI GCTCTTC 1 cut(s) 295
BssECI CCNNGG 1 cut(s) 79
BssT1I CCWWGG 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 1 cut(s) 295
BstAPI GCANNNNNTGC 1 cut(s) 92
BstDEI CTNAG 2 cut(s) 73, 279
BstHHI GCGC 1 cut(s) 86
BstMAI GTCTC 2 cut(s) 126, 269
BstMWI GCNNNNNNNGC 2 cut(s) 92, 114
BstSCI CCNGG 1 cut(s) 99
BstXI CCANNNNNNTGG 1 cut(s) 55
BtsIMutI CAGTG 1 cut(s) 39
CaiI CAGNNNCTG 1 cut(s) 278
CfoI GCGC 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 128
CviAII CATG 1 cut(s) 295
CviJI RGCY 1 cut(s) 288
CviKI_1 RGCY 1 cut(s) 288
DdeI CTNAG 2 cut(s) 73, 279
Eam1104I CTCTTC 1 cut(s) 295
EarI CTCTTC 1 cut(s) 295
Eco130I CCWWGG 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 128
Eco88I CYCGRG 1 cut(s) 29
EcoT14I CCWWGG 1 cut(s) 79
EcoT22I ATGCAT 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 1 cut(s) 298
FaiI YATR 1 cut(s) 296
FatI CATG 1 cut(s) 294
FspBI CTAG 2 cut(s) 80, 125
GlaI GCGC 1 cut(s) 85
HapII CCGG 2 cut(s) 101, 153
HhaI GCGC 1 cut(s) 86
Hin1II CATG 1 cut(s) 298
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HinfI GANTC 2 cut(s) 184, 233
HpaII CCGG 2 cut(s) 101, 153
Hpy166II GTNNAC 1 cut(s) 131
Hpy188I TCNGA 1 cut(s) 12
Hpy8I GTNNAC 1 cut(s) 131
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4V TGCA 3 cut(s) 39, 53, 95
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 114
HpyF3I CTNAG 2 cut(s) 73, 279
Hsp92II CATG 1 cut(s) 298
HspAI GCGC 1 cut(s) 84
LguI GCTCTTC 1 cut(s) 295
LpnPI CCDG 2 cut(s) 114, 166
LweI GCATC 1 cut(s) 117
MaeI CTAG 2 cut(s) 80, 125
MaeIII GTNAC 1 cut(s) 222
MboII GAAGA 3 cut(s) 25, 133, 282
MlyI GAGTC 2 cut(s) 193, 227
MnlI CCTC 3 cut(s) 25, 38, 274
Mph1103I ATGCAT 1 cut(s) 55
MslI CAYNNNNRTG 1 cut(s) 179
MspI CCGG 2 cut(s) 101, 153
MspR9I CCNGG 1 cut(s) 101
Mva1269I GAATGC 1 cut(s) 41
MwoI GCNNNNNNNGC 2 cut(s) 92, 114
NciI CCSGG 1 cut(s) 101
NlaIII CATG 1 cut(s) 298
NsiI ATGCAT 1 cut(s) 55
PaeR7I CTCGAG 1 cut(s) 29
PciSI GCTCTTC 1 cut(s) 295
PctI GAATGC 1 cut(s) 41
PleI GAGTC 2 cut(s) 192, 227
PpsI GAGTC 2 cut(s) 192, 227
PspPI GGNCC 1 cut(s) 128
PspXI VCTCGAGB 1 cut(s) 29
PstNI CAGNNNCTG 1 cut(s) 278
RseI CAYNNNNRTG 1 cut(s) 179
SapI GCTCTTC 1 cut(s) 295
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 2 cut(s) 193, 227
ScrFI CCNGG 1 cut(s) 101
SetI ASST 3 cut(s) 30, 130, 290
SfaNI GCATC 1 cut(s) 117
Sfr274I CTCGAG 1 cut(s) 29
SinI GGWCC 1 cut(s) 128
SlaI CTCGAG 1 cut(s) 29
SmiMI CAYNNNNRTG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
SspMI CTAG 2 cut(s) 80, 125
StyD4I CCNGG 1 cut(s) 99
StyI CCWWGG 1 cut(s) 79
TaaI ACNGT 1 cut(s) 43
TaqI TCGA 2 cut(s) 30, 165
TscAI CASTG 1 cut(s) 46
TspRI CASTG 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 128
XhoI CTCGAG 1 cut(s) 29
XmaJI CCTAGG 1 cut(s) 79
XspI CTAG 2 cut(s) 80, 125
Zsp2I ATGCAT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.