Rroxscaffold_7G00172540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0007969
Physical Location & Seq
Forward (+)
12778414 .. 12780219
1806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00172540.1

Sequence Viewer

Length: 348 bp
ATGGGGGGCCAAGAGGTTAAGCAGCTTGAGGATTGCACAGTTGCCAATGCGTTGGGCACTTGGGTATTCTCAGTAGCAGGGGCTTTGCTAGCAATTCCGGTGGGGATAAAAAGGAAATCTTTAGGGCCACTTGTCTTCTTTGGCACAACCGGTACCATGCTTGACATCATTATGGGTATCACTCAGTGTGAAAGAGAACATGCAGAACGCCAAGCGAAACTTTCAGAAGCCCAAAATTCTGCAACCAATGCTTCTTTTTCTGAGACTGGAGCCGGGTTGTCTTCTTTGTCTGAAACCAGAGCCGAGTATTCTTCTTTGTCCGAAACTGGATCCAAGTCTTCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.02

Weight (kDa)

5.07

Isoelectric Point (pI)

21.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 152
AclWI GGATC 2 cut(s) 324, 337
AcsI RAATTY 1 cut(s) 235
AdeI CACNNNGTG 1 cut(s) 186
AfaI GTAC 1 cut(s) 154
AgeI ACCGGT 1 cut(s) 149
AgsI TTSAA 1 cut(s) 342
AluBI AGCT 1 cut(s) 25
AluI AGCT 1 cut(s) 25
Alw26I GTCTC 1 cut(s) 257
AlwI GGATC 2 cut(s) 324, 337
AoxI GGCC 2 cut(s) 7, 125
ApeKI GCWGC 1 cut(s) 22
ApoI RAATTY 1 cut(s) 235
AsiGI ACCGGT 1 cut(s) 149
Asp718I GGTACC 1 cut(s) 152
AspS9I GGNCC 2 cut(s) 7, 125
AsuC2I CCSGG 1 cut(s) 274
AsuNHI GCTAGC 1 cut(s) 88
BaeGI GKGCMC 1 cut(s) 59
BamHI GGATCC 1 cut(s) 329
BanI GGYRCC 1 cut(s) 152
BbsI GAAGAC 3 cut(s) 127, 273, 330
BbvI GCAGC 1 cut(s) 34
BcnI CCSGG 1 cut(s) 274
BcoDI GTCTC 1 cut(s) 257
BfaI CTAG 1 cut(s) 89
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 274
BmgT120I GGNCC 2 cut(s) 7, 125
BmiI GGNNCC 4 cut(s) 8, 154, 271, 331
BmrFI CCNGG 1 cut(s) 274
BmtI GCTAGC 1 cut(s) 92
BpiI GAAGAC 3 cut(s) 127, 273, 330
BpmI CTGGAG 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 47
BpuMI CCSGG 1 cut(s) 274
BsaWI WCCGGW 2 cut(s) 97, 149
Bse118I RCCGGY 1 cut(s) 149
Bse1I ACTGG 2 cut(s) 271, 331
BseMII CTCAG 3 cut(s) 84, 197, 252
BseNI ACTGG 2 cut(s) 271, 331
BseSI GKGCMC 1 cut(s) 59
BseXI GCAGC 1 cut(s) 34
BshFI GGCC 2 cut(s) 9, 127
BshNI GGYRCC 1 cut(s) 152
BshTI ACCGGT 1 cut(s) 149
BsiSI CCGG 3 cut(s) 98, 150, 273
BsmAI GTCTC 1 cut(s) 257
BsnI GGCC 2 cut(s) 9, 127
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 1 cut(s) 329
BspANI GGCC 2 cut(s) 9, 127
BspCNI CTCAG 3 cut(s) 83, 196, 253
BspLI GGNNCC 4 cut(s) 8, 154, 271, 331
BspOI GCTAGC 1 cut(s) 92
BspPI GGATC 2 cut(s) 324, 337
BspT107I GGYRCC 1 cut(s) 152
BsrFI RCCGGY 1 cut(s) 149
BsrI ACTGG 2 cut(s) 271, 331
BssAI RCCGGY 1 cut(s) 149
BssMI GATC 1 cut(s) 329
Bst4CI ACNGT 1 cut(s) 40
BstAPI GCANNNNNTGC 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 3 cut(s) 70, 183, 261
BstKTI GATC 1 cut(s) 332
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 1 cut(s) 329
BstMWI GCNNNNNNNGC 2 cut(s) 89, 248
BstNSI RCATGY 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 272
BstSLI GKGCMC 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 34
BstV2I GAAGAC 3 cut(s) 127, 273, 330
BstX2I RGATCY 1 cut(s) 329
BstXI CCANNNNNNTGG 1 cut(s) 52
BstYI RGATCY 1 cut(s) 329
BsuRI GGCC 2 cut(s) 9, 127
BtsIMutI CAGTG 1 cut(s) 191
Cac8I GCNNGC 1 cut(s) 90
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 2 cut(s) 7, 125
Csp6I GTAC 1 cut(s) 153
CspAI ACCGGT 1 cut(s) 149
CspCI CAANNNNNGTGG 2 cut(s) 81, 116
CviAII CATG 2 cut(s) 157, 200
CviJI RGCY 7 cut(s) 9, 25, 83, 127, 230, 272, 302
CviKI_1 RGCY 7 cut(s) 9, 25, 83, 127, 230, 272, 302
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 3 cut(s) 70, 183, 261
DpnI GATC 1 cut(s) 331
DpnII GATC 1 cut(s) 329
DraIII CACNNNGTG 1 cut(s) 186
FaeI CATG 2 cut(s) 160, 203
FaiI YATR 3 cut(s) 158, 173, 201
FalI AAGNNNNNCTT 4 cut(s) 103, 135, 204, 236
FatI CATG 2 cut(s) 156, 199
Fnu4HI GCNGC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 23
FspBI CTAG 1 cut(s) 89
GluI GCNGC 1 cut(s) 23
GsuI CTGGAG 1 cut(s) 288
HaeIII GGCC 2 cut(s) 9, 127
HapII CCGG 3 cut(s) 98, 150, 273
Hin1II CATG 2 cut(s) 160, 203
HpaII CCGG 3 cut(s) 98, 150, 273
Hpy188I TCNGA 4 cut(s) 226, 262, 292, 322
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4V TGCA 3 cut(s) 36, 203, 242
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 248
HpyF3I CTNAG 3 cut(s) 70, 183, 261
Hsp92II CATG 2 cut(s) 160, 203
KpnI GGTACC 1 cut(s) 156
Kzo9I GATC 1 cut(s) 329
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 7 cut(s) 63, 111, 163, 252, 286, 310, 312
Lsp1109I GCAGC 1 cut(s) 34
MaeI CTAG 1 cut(s) 89
MalI GATC 1 cut(s) 331
MboI GATC 1 cut(s) 329
MboII GAAGA 4 cut(s) 127, 273, 303, 330
MflI RGATCY 1 cut(s) 329
MhlI GDGCHC 1 cut(s) 59
MluCI AATT 2 cut(s) 93, 235
MnlI CCTC 2 cut(s) 7, 22
MseI TTAA 1 cut(s) 18
MslI CAYNNNNRTG 1 cut(s) 170
MspI CCGG 3 cut(s) 98, 150, 273
MspR9I CCNGG 1 cut(s) 274
MwoI GCNNNNNNNGC 2 cut(s) 89, 248
NciI CCSGG 1 cut(s) 274
NdeII GATC 1 cut(s) 329
NheI GCTAGC 1 cut(s) 88
NlaIII CATG 2 cut(s) 160, 203
NlaIV GGNNCC 4 cut(s) 8, 154, 271, 331
NmeAIII GCCGAG 1 cut(s) 328
NspI RCATGY 1 cut(s) 203
PinAI ACCGGT 1 cut(s) 149
PkrI GCNGC 1 cut(s) 24
PspN4I GGNNCC 4 cut(s) 8, 154, 271, 331
PspPI GGNCC 2 cut(s) 7, 125
PsuI RGATCY 1 cut(s) 329
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
RseI CAYNNNNRTG 1 cut(s) 170
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 1 cut(s) 23
Sau3AI GATC 1 cut(s) 329
Sau96I GGNCC 2 cut(s) 7, 125
ScrFI CCNGG 1 cut(s) 274
SduI GDGCHC 1 cut(s) 59
SetI ASST 2 cut(s) 18, 27
SmiMI CAYNNNNRTG 1 cut(s) 170
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 2 cut(s) 93, 235
SspMI CTAG 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 272
TaaI ACNGT 1 cut(s) 40
TasI AATT 2 cut(s) 93, 235
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 1 cut(s) 191
TseI GCWGC 1 cut(s) 22
TspRI CASTG 1 cut(s) 191
XapI RAATTY 1 cut(s) 235
XceI RCATGY 1 cut(s) 203
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.