MD03G1196900.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
26927976 .. 26929938
1963 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1196900.v1.1.491

Sequence Viewer

Length: 267 bp
ATGTTGAATGATGCTGTGCATGGCTATCTGCAACGCAATGGGCACTTGGGTTTTCTCCGTAGCAGGGGCTTTGTTAGCAATTCCAGTGGGGATAAAAAGGAAACTTTATCACCGCTTGTGTTCTTCGGCACAACAGTTACCATGCTTGACATTATAATGGGAATCACTCGGTGTGAAAAAGAACATGCAGAACGCCAAGCGAAGCTATTAGAAGCCCAGACTTCTGCAACTGATGCTTCATTTACTGAGACTGGGGCGGAAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.64

Weight (kDa)

5.85

Isoelectric Point (pI)

23.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 155
AciI CCGC 2 cut(s) 113, 257
AdeI CACNNNGTG 1 cut(s) 171
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 1 cut(s) 7
AluBI AGCT 1 cut(s) 205
AluI AGCT 1 cut(s) 205
Alw26I GTCTC 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 102
BaeGI GKGCMC 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 242
BmrI ACTGGG 1 cut(s) 261
BmsI GCATC 1 cut(s) 223
BmuI ACTGGG 1 cut(s) 261
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 2 cut(s) 84, 256
Bse3DI GCAATG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMI GCAATG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 2 cut(s) 84, 256
BseSI GKGCMC 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 45
BspACI CCGC 2 cut(s) 113, 257
BspCNI CTCAG 1 cut(s) 238
BsrDI GCAATG 1 cut(s) 43
BsrI ACTGG 2 cut(s) 84, 256
Bst4CI ACNGT 1 cut(s) 136
BstAPI GCANNNNNTGC 1 cut(s) 233
BstDEI CTNAG 1 cut(s) 246
BstMAI GTCTC 1 cut(s) 242
BstMWI GCNNNNNNNGC 2 cut(s) 75, 233
BstNSI RCATGY 1 cut(s) 188
BstSLI GKGCMC 1 cut(s) 45
BtsIMutI CAGTG 1 cut(s) 91
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 3 cut(s) 20, 142, 185
CviJI RGCY 4 cut(s) 24, 69, 205, 215
CviKI_1 RGCY 4 cut(s) 24, 69, 205, 215
DdeI CTNAG 1 cut(s) 246
DraIII CACNNNGTG 1 cut(s) 171
FaeI CATG 3 cut(s) 23, 145, 188
FaiI YATR 5 cut(s) 21, 143, 155, 186, 265
FatI CATG 3 cut(s) 19, 141, 184
Hin1II CATG 3 cut(s) 23, 145, 188
HinfI GANTC 1 cut(s) 162
HphI GGTGA 1 cut(s) 102
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 4 cut(s) 19, 31, 188, 227
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 233
HpyF3I CTNAG 1 cut(s) 246
Hsp92II CATG 3 cut(s) 23, 145, 188
LpnPI CCDG 4 cut(s) 49, 97, 230, 237
LweI GCATC 1 cut(s) 223
MaeIII GTNAC 1 cut(s) 136
MboII GAAGA 1 cut(s) 115
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 1 cut(s) 79
MslI CAYNNNNRTG 1 cut(s) 155
MwoI GCNNNNNNNGC 2 cut(s) 75, 233
NlaIII CATG 3 cut(s) 23, 145, 188
NspI RCATGY 1 cut(s) 188
PfeI GAWTC 1 cut(s) 162
PsiI TTATAA 1 cut(s) 155
RseI CAYNNNNRTG 1 cut(s) 155
SduI GDGCHC 1 cut(s) 45
SetI ASST 1 cut(s) 207
SfaNI GCATC 1 cut(s) 223
SmiMI CAYNNNNRTG 1 cut(s) 155
Sse9I AATT 1 cut(s) 79
SsiI CCGC 2 cut(s) 113, 257
TaaI ACNGT 1 cut(s) 136
TasI AATT 1 cut(s) 79
TfiI GAWTC 1 cut(s) 162
TscAI CASTG 1 cut(s) 91
TspDTI ATGAA 1 cut(s) 228
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 1 cut(s) 91
XceI RCATGY 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.