Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007969

Physical Location & Seq

Genomic Coordinates Forward (+)

42326997 .. 42337690

Gene Structure 10694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1353400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGGAAGCCAAGAGACTGTAAAGCAGCTTGAGGACTGCTCAGTTGCCAACGCAATGGGCACTTGGGTTTTCTCCGTAGCAGGGGCTTTGTTAGCGATTCCAGTGGGGATAAAAAGGAAATCTTTAGCGCCGCTTGTGTTCTTCGGCACAACAGGTACCATGCTTGATATTATAATGGGAATCACTCAGTGTGAAAGAGAACATGCAGAATGCCAAGCGAAGCTATTAGAAGCCCAGAAATCTGCAACTGATGCTTCATTTGCTGAGACTGGGGCGGAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

95

Amino Acids

9.91

Weight (kDa)

4.78

Isoelectric Point (pI)

15.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21930 AT3G42150 AT3G42150 AT3G42150
fragaria_vesca	FvH4_2g26520 FvH4_2g26520 FvH4_2g26520
malus_domestica	MD03G1196900.v1.1 MD08G1168000.v1.1 MD15G1353400.v1.1
prunus_persica	Prupe.1G501700_v2.0.a1 Prupe.1G501700_v2.0.a1 Prupe.1G501700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0295391
rosa_laevigata	RLG00000011810
rosa_multiflora	Rmu_sc0003058.1_g000012
rosa_roxburghii	Rroxscaffold_171G00441520 Rroxscaffold_7G00172540
rosa_rugosa	Rorug06G0250300
rosa_samantha	Rh6AG363600 Rh6BG371800 Rh6CG378200 Rh6DG364400
rosa_wichuraiana	Rw6G031740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	173
Acc65I	GGTACC	1 cut(s)	155
AccB1I	GGYRCC	1 cut(s)	155
AciI	CCGC	2 cut(s)	131, 275
AdeI	CACNNNGTG	1 cut(s)	189
AfaI	GTAC	1 cut(s)	157
AfiI	CCNNNNNNNGG	1 cut(s)	81
AluBI	AGCT	2 cut(s)	28, 223
AluI	AGCT	2 cut(s)	28, 223
Alw26I	GTCTC	2 cut(s)	8, 260
ApeKI	GCWGC	1 cut(s)	25
Asp718I	GGTACC	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	130
BaeGI	GKGCMC	1 cut(s)	62
BanI	GGYRCC	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	37
BcoDI	GTCTC	2 cut(s)	8, 260
BfoI	RGCGCY	1 cut(s)	131
BisI	GCNGC	2 cut(s)	26, 131
BlsI	GCNGC	2 cut(s)	27, 132
BmiI	GGNNCC	1 cut(s)	157
BmrI	ACTGGG	1 cut(s)	279
BmsI	GCATC	1 cut(s)	241
BmuI	ACTGGG	1 cut(s)	279
BplI	GAGNNNNNCTC	2 cut(s)	23, 55
BpuEI	CTTGAG	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse1I	ACTGG	2 cut(s)	101, 274
Bse3DI	GCAATG	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	3 cut(s)	54, 200, 255
BseNI	ACTGG	2 cut(s)	101, 274
BseSI	GKGCMC	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	37
BshNI	GGYRCC	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmAI	GTCTC	2 cut(s)	8, 260
BsmI	GAATGC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	62
BspACI	CCGC	2 cut(s)	131, 275
BspCNI	CTCAG	3 cut(s)	53, 199, 256
BspLI	GGNNCC	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	60
BsrI	ACTGG	2 cut(s)	101, 274
Bst4CI	ACNGT	1 cut(s)	19
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstDEI	CTNAG	3 cut(s)	40, 186, 264
BstH2I	RGCGCY	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	130
BstMAI	GTCTC	2 cut(s)	8, 260
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 251, 260
BstNSI	RCATGY	1 cut(s)	206
BstSLI	GKGCMC	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	37
BstXI	CCANNNNNNTGG	1 cut(s)	55
BtsIMutI	CAGTG	2 cut(s)	108, 194
CfoI	GCGC	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	156
CviAII	CATG	2 cut(s)	160, 203
CviJI	RGCY	5 cut(s)	9, 28, 86, 223, 233
CviKI_1	RGCY	5 cut(s)	9, 28, 86, 223, 233
CviQI	GTAC	1 cut(s)	156
DdeI	CTNAG	3 cut(s)	40, 186, 264
DraIII	CACNNNGTG	1 cut(s)	189
FaeI	CATG	2 cut(s)	163, 206
FaiI	YATR	4 cut(s)	161, 173, 204, 283
FalI	AAGNNNNNCTT	2 cut(s)	106, 138
FatI	CATG	2 cut(s)	159, 202
Fnu4HI	GCNGC	2 cut(s)	26, 131
Fsp4HI	GCNGC	2 cut(s)	26, 131
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	2 cut(s)	26, 131
HaeII	RGCGCY	1 cut(s)	131
HhaI	GCGC	1 cut(s)	130
Hin1II	CATG	2 cut(s)	163, 206
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HinfI	GANTC	3 cut(s)	97, 180, 278
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4V	TGCA	2 cut(s)	206, 245
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 251, 260
HpyF3I	CTNAG	3 cut(s)	40, 186, 264
Hsp92II	CATG	2 cut(s)	163, 206
HspAI	GCGC	1 cut(s)	128
KpnI	GGTACC	1 cut(s)	159
LpnPI	CCDG	5 cut(s)	66, 114, 138, 248, 255
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	1 cut(s)	241
MboII	GAAGA	1 cut(s)	133
MhlI	GDGCHC	1 cut(s)	62
MnlI	CCTC	1 cut(s)	25
Mva1269I	GAATGC	1 cut(s)	215
MwoI	GCNNNNNNNGC	3 cut(s)	92, 251, 260
NlaIII	CATG	2 cut(s)	163, 206
NlaIV	GGNNCC	1 cut(s)	157
NspI	RCATGY	1 cut(s)	206
PctI	GAATGC	1 cut(s)	215
PfeI	GAWTC	3 cut(s)	97, 180, 278
PkrI	GCNGC	2 cut(s)	27, 132
PsiI	TTATAA	1 cut(s)	173
PspN4I	GGNNCC	1 cut(s)	157
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
SatI	GCNGC	2 cut(s)	26, 131
SduI	GDGCHC	1 cut(s)	62
SetI	ASST	3 cut(s)	30, 157, 225
SfaNI	GCATC	1 cut(s)	241
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
SsiI	CCGC	2 cut(s)	131, 275
TaaI	ACNGT	1 cut(s)	19
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	3 cut(s)	97, 180, 278
TscAI	CASTG	2 cut(s)	108, 194
TseI	GCWGC	1 cut(s)	25
TspDTI	ATGAA	1 cut(s)	246
TspGWI	ACGGA	1 cut(s)	64
TspRI	CASTG	2 cut(s)	108, 194
XceI	RCATGY	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.