Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003058.1

Orthogroup ID

OG0007969

Physical Location & Seq

Genomic Coordinates Forward (+)

51032 .. 52342

Gene Structure 1311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003058.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atggagggccaagaggttaagcagcttgaggattgcacagttgccaatgcgttgggcacttgggtattctcagtagcaggggctttgctagcaattccggtggggataaaaaggaaatctttagggccacttgtcttctttggcacaaccggtaccatgcttgacatcattatgggtatcactcagtgtgaaagagaacatgcagaacgccaagccaagctttcagaagcccaaaattctgcaaccaatgcttctttttctgagactggaaccgagttgtcttctttgtctgagaccggagccgagtattcttctttttccgaaactggatccgagtcttcaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

115

Amino Acids

12.13

Weight (kDa)

4.47

Isoelectric Point (pI)

24.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21930 AT3G42150 AT3G42150 AT3G42150
fragaria_vesca	FvH4_2g26520 FvH4_2g26520 FvH4_2g26520
malus_domestica	MD03G1196900.v1.1 MD08G1168000.v1.1 MD15G1353400.v1.1
prunus_persica	Prupe.1G501700_v2.0.a1 Prupe.1G501700_v2.0.a1 Prupe.1G501700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0295391
rosa_laevigata	RLG00000011810
rosa_multiflora	Rmu_sc0003058.1_g000012
rosa_roxburghii	Rroxscaffold_171G00441520 Rroxscaffold_7G00172540
rosa_rugosa	Rorug06G0250300
rosa_samantha	Rh6AG363600 Rh6BG371800 Rh6CG378200 Rh6DG364400
rosa_wichuraiana	Rw6G031740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	152
AccB1I	GGYRCC	1 cut(s)	152
AclWI	GGATC	2 cut(s)	324, 337
AcsI	RAATTY	1 cut(s)	235
AdeI	CACNNNGTG	1 cut(s)	186
AfaI	GTAC	1 cut(s)	154
AgeI	ACCGGT	1 cut(s)	149
AgsI	TTSAA	1 cut(s)	342
AluBI	AGCT	2 cut(s)	25, 220
AluI	AGCT	2 cut(s)	25, 220
Alw26I	GTCTC	2 cut(s)	257, 287
AlwI	GGATC	2 cut(s)	324, 337
AoxI	GGCC	2 cut(s)	7, 125
ApeKI	GCWGC	1 cut(s)	22
ApoI	RAATTY	1 cut(s)	235
AsiGI	ACCGGT	1 cut(s)	149
Asp718I	GGTACC	1 cut(s)	152
AspS9I	GGNCC	2 cut(s)	7, 125
AsuNHI	GCTAGC	1 cut(s)	88
BaeGI	GKGCMC	1 cut(s)	59
BamHI	GGATCC	1 cut(s)	329
BanI	GGYRCC	1 cut(s)	152
BbsI	GAAGAC	3 cut(s)	127, 273, 330
BbvI	GCAGC	1 cut(s)	34
BcoDI	GTCTC	2 cut(s)	257, 287
BfaI	CTAG	1 cut(s)	89
BisI	GCNGC	1 cut(s)	23
BlsI	GCNGC	1 cut(s)	24
BmgT120I	GGNCC	2 cut(s)	7, 125
BmiI	GGNNCC	4 cut(s)	154, 271, 301, 331
BmtI	GCTAGC	1 cut(s)	92
BpiI	GAAGAC	3 cut(s)	127, 273, 330
BpuEI	CTTGAG	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	287
BsaWI	WCCGGW	3 cut(s)	97, 149, 296
Bse118I	RCCGGY	1 cut(s)	149
Bse1I	ACTGG	2 cut(s)	271, 331
BseMII	CTCAG	4 cut(s)	84, 197, 252, 282
BseNI	ACTGG	2 cut(s)	271, 331
BseSI	GKGCMC	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	34
BshFI	GGCC	2 cut(s)	9, 127
BshNI	GGYRCC	1 cut(s)	152
BshTI	ACCGGT	1 cut(s)	149
BsiSI	CCGG	3 cut(s)	98, 150, 297
BsmAI	GTCTC	2 cut(s)	257, 287
BsnI	GGCC	2 cut(s)	9, 127
Bso31I	GGTCTC	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp143I	GATC	1 cut(s)	329
BspANI	GGCC	2 cut(s)	9, 127
BspCNI	CTCAG	4 cut(s)	83, 196, 253, 283
BspLI	GGNNCC	4 cut(s)	154, 271, 301, 331
BspOI	GCTAGC	1 cut(s)	92
BspPI	GGATC	2 cut(s)	324, 337
BspT107I	GGYRCC	1 cut(s)	152
BspTNI	GGTCTC	1 cut(s)	287
BsrFI	RCCGGY	1 cut(s)	149
BsrI	ACTGG	2 cut(s)	271, 331
BssAI	RCCGGY	1 cut(s)	149
BssMI	GATC	1 cut(s)	329
Bst4CI	ACNGT	1 cut(s)	40
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	4 cut(s)	70, 183, 261, 291
BstKTI	GATC	1 cut(s)	332
BstMAI	GTCTC	2 cut(s)	257, 287
BstMBI	GATC	1 cut(s)	329
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 248
BstNSI	RCATGY	1 cut(s)	203
BstSLI	GKGCMC	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	34
BstV2I	GAAGAC	3 cut(s)	127, 273, 330
BstX2I	RGATCY	1 cut(s)	329
BstXI	CCANNNNNNTGG	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	329
BsuRI	GGCC	2 cut(s)	9, 127
BtsIMutI	CAGTG	1 cut(s)	191
Cac8I	GCNNGC	1 cut(s)	90
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	2 cut(s)	7, 125
Csp6I	GTAC	1 cut(s)	153
CspAI	ACCGGT	1 cut(s)	149
CspCI	CAANNNNNGTGG	2 cut(s)	81, 116
CviAII	CATG	2 cut(s)	157, 200
CviJI	RGCY	8 cut(s)	9, 25, 83, 127, 215, 220, 230, 302
CviKI_1	RGCY	8 cut(s)	9, 25, 83, 127, 215, 220, 230, 302
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	4 cut(s)	70, 183, 261, 291
DpnI	GATC	1 cut(s)	331
DpnII	GATC	1 cut(s)	329
DraIII	CACNNNGTG	1 cut(s)	186
Eco31I	GGTCTC	1 cut(s)	287
FaeI	CATG	2 cut(s)	160, 203
FaiI	YATR	3 cut(s)	158, 173, 201
FalI	AAGNNNNNCTT	4 cut(s)	103, 135, 204, 236
FatI	CATG	2 cut(s)	156, 199
Fnu4HI	GCNGC	1 cut(s)	23
Fsp4HI	GCNGC	1 cut(s)	23
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	1 cut(s)	23
HaeIII	GGCC	2 cut(s)	9, 127
HapII	CCGG	3 cut(s)	98, 150, 297
Hin1II	CATG	2 cut(s)	160, 203
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	1 cut(s)	335
HpaII	CCGG	3 cut(s)	98, 150, 297
Hpy188I	TCNGA	5 cut(s)	226, 262, 292, 322, 334
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4V	TGCA	3 cut(s)	36, 203, 242
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 248
HpyF3I	CTNAG	4 cut(s)	70, 183, 261, 291
Hsp92II	CATG	2 cut(s)	160, 203
KpnI	GGTACC	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	329
LmnI	GCTCC	1 cut(s)	299
LpnPI	CCDG	6 cut(s)	63, 111, 163, 252, 310, 312
Lsp1109I	GCAGC	1 cut(s)	34
MaeI	CTAG	1 cut(s)	89
MalI	GATC	1 cut(s)	331
MboI	GATC	1 cut(s)	329
MboII	GAAGA	4 cut(s)	127, 273, 303, 330
MflI	RGATCY	1 cut(s)	329
MhlI	GDGCHC	1 cut(s)	59
MluCI	AATT	2 cut(s)	93, 235
MlyI	GAGTC	1 cut(s)	344
MnlI	CCTC	2 cut(s)	7, 22
MseI	TTAA	1 cut(s)	18
MslI	CAYNNNNRTG	1 cut(s)	170
MspI	CCGG	3 cut(s)	98, 150, 297
MwoI	GCNNNNNNNGC	2 cut(s)	89, 248
NdeII	GATC	1 cut(s)	329
NheI	GCTAGC	1 cut(s)	88
NlaIII	CATG	2 cut(s)	160, 203
NlaIV	GGNNCC	4 cut(s)	154, 271, 301, 331
NmeAIII	GCCGAG	1 cut(s)	328
NspI	RCATGY	1 cut(s)	203
PinAI	ACCGGT	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	24
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
PspN4I	GGNNCC	4 cut(s)	154, 271, 301, 331
PspPI	GGNCC	2 cut(s)	7, 125
PsuI	RGATCY	1 cut(s)	329
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
RseI	CAYNNNNRTG	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	1 cut(s)	23
Sau3AI	GATC	1 cut(s)	329
Sau96I	GGNCC	2 cut(s)	7, 125
SchI	GAGTC	1 cut(s)	344
SduI	GDGCHC	1 cut(s)	59
SetI	ASST	3 cut(s)	18, 27, 222
SmiMI	CAYNNNNRTG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	2 cut(s)	93, 235
SspMI	CTAG	1 cut(s)	89
TaaI	ACNGT	1 cut(s)	40
TasI	AATT	2 cut(s)	93, 235
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	1 cut(s)	191
TseI	GCWGC	1 cut(s)	22
TspRI	CASTG	1 cut(s)	191
XapI	RAATTY	1 cut(s)	235
XceI	RCATGY	1 cut(s)	203
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.