Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0007969

Physical Location & Seq

Genomic Coordinates Forward (+)

19969059 .. 19969608

Gene Structure 550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1168000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGCTGATGCTGTTTCTTGAAAGAGAAAGTGCAATGGGCACTTGGGTATTCTCAGTGGCAGGGGCTCTACTAGCAATTCCGGTGGGGATAAAAAGGAAATCTCTGGCTCCGCTTGTGTTCTTCGGCACAACAGGTACTATGCTCGATATTATTATGGGGATCACTCAATGTGAAAGAGAACATGCAGAACGCCAAGCGAAGCTATTAGAAGCGCAAACTAGTGCAACTGATGCTTCTTTTGCTGAGACTGGGGCAGAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

88

Amino Acids

9.36

Weight (kDa)

4.97

Isoelectric Point (pI)

7.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21930 AT3G42150 AT3G42150 AT3G42150
fragaria_vesca	FvH4_2g26520 FvH4_2g26520 FvH4_2g26520
malus_domestica	MD03G1196900.v1.1 MD08G1168000.v1.1 MD15G1353400.v1.1
prunus_persica	Prupe.1G501700_v2.0.a1 Prupe.1G501700_v2.0.a1 Prupe.1G501700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0295391
rosa_laevigata	RLG00000011810
rosa_multiflora	Rmu_sc0003058.1_g000012
rosa_roxburghii	Rroxscaffold_171G00441520 Rroxscaffold_7G00172540
rosa_rugosa	Rorug06G0250300
rosa_samantha	Rh6AG363600 Rh6BG371800 Rh6CG378200 Rh6DG364400
rosa_wichuraiana	Rw6G031740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	110
AclWI	GGATC	1 cut(s)	167
AfaI	GTAC	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	20
AhlI	ACTAGT	1 cut(s)	218
AluBI	AGCT	1 cut(s)	202
AluI	AGCT	1 cut(s)	202
Alw26I	GTCTC	1 cut(s)	239
AlwI	GGATC	1 cut(s)	167
AspLEI	GCGC	1 cut(s)	214
BaeGI	GKGCMC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	239
BcuI	ACTAGT	1 cut(s)	218
BfaI	CTAG	2 cut(s)	71, 219
BmiI	GGNNCC	1 cut(s)	108
BmrI	ACTGGG	1 cut(s)	258
BmsI	GCATC	1 cut(s)	220
BmuI	ACTGGG	1 cut(s)	258
BsaWI	WCCGGW	1 cut(s)	79
Bse1I	ACTGG	1 cut(s)	253
Bse3DI	GCAATG	1 cut(s)	39
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	2 cut(s)	66, 234
BseNI	ACTGG	1 cut(s)	253
BseSI	GKGCMC	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	80
BsmAI	GTCTC	1 cut(s)	239
Bsp1286I	GDGCHC	2 cut(s)	41, 67
Bsp143I	GATC	1 cut(s)	159
BspACI	CCGC	1 cut(s)	110
BspCNI	CTCAG	2 cut(s)	65, 235
BspLI	GGNNCC	1 cut(s)	108
BspPI	GGATC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	253
BssMI	GATC	1 cut(s)	159
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstDEI	CTNAG	2 cut(s)	52, 243
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	1 cut(s)	162
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	1 cut(s)	159
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 230, 239
BstNSI	RCATGY	1 cut(s)	185
BstSLI	GKGCMC	1 cut(s)	41
BtsIMutI	CAGTG	1 cut(s)	60
CfoI	GCGC	1 cut(s)	214
Csp6I	GTAC	1 cut(s)	135
CspCI	CAANNNNNGTGG	2 cut(s)	63, 98
CviAII	CATG	1 cut(s)	182
CviJI	RGCY	3 cut(s)	65, 107, 202
CviKI_1	RGCY	3 cut(s)	65, 107, 202
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	2 cut(s)	52, 243
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
Eco24I	GRGCYC	1 cut(s)	67
EcoT38I	GRGCYC	1 cut(s)	67
FaeI	CATG	1 cut(s)	185
FaiI	YATR	4 cut(s)	140, 155, 183, 262
FatI	CATG	1 cut(s)	181
FriOI	GRGCYC	1 cut(s)	67
FspBI	CTAG	2 cut(s)	71, 219
GlaI	GCGC	1 cut(s)	213
HapII	CCGG	1 cut(s)	80
HhaI	GCGC	1 cut(s)	214
Hin1II	CATG	1 cut(s)	185
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HinfI	GANTC	1 cut(s)	257
HpaII	CCGG	1 cut(s)	80
Hpy188III	TCNNGA	1 cut(s)	17
HpyCH4V	TGCA	3 cut(s)	32, 185, 224
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 230, 239
HpyF3I	CTNAG	2 cut(s)	52, 243
Hsp92II	CATG	1 cut(s)	185
HspAI	GCGC	1 cut(s)	212
Kzo9I	GATC	1 cut(s)	159
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	5 cut(s)	45, 89, 93, 117, 234
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	2 cut(s)	71, 219
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MboII	GAAGA	1 cut(s)	112
MhlI	GDGCHC	2 cut(s)	41, 67
MluCI	AATT	1 cut(s)	75
MspI	CCGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	3 cut(s)	71, 230, 239
NdeII	GATC	1 cut(s)	159
NlaIII	CATG	1 cut(s)	185
NlaIV	GGNNCC	1 cut(s)	108
NspI	RCATGY	1 cut(s)	185
PspN4I	GGNNCC	1 cut(s)	108
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
Sau3AI	GATC	1 cut(s)	159
SduI	GDGCHC	2 cut(s)	41, 67
SetI	ASST	2 cut(s)	136, 204
SfaNI	GCATC	1 cut(s)	220
SpeI	ACTAGT	1 cut(s)	218
Sse9I	AATT	1 cut(s)	75
SsiI	CCGC	1 cut(s)	110
SspMI	CTAG	2 cut(s)	71, 219
TaqI	TCGA	1 cut(s)	144
TasI	AATT	1 cut(s)	75
TscAI	CASTG	1 cut(s)	60
TspRI	CASTG	1 cut(s)	60
XceI	RCATGY	1 cut(s)	185
XspI	CTAG	2 cut(s)	71, 219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.