FvH4_2g26520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007969
Physical Location & Seq
Reverse (-)
21282702 .. 21284550
1849 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g26520.t1

Sequence Viewer

Length: 318 bp
ATGGGGAGCCAGGAGGTTAAGCAGCTTGAGGATTGCACTGTTGCCAACGCATTGGGTACTTGGGTATTCTCAGTAGCAGGGGCTTTGCTAGCAATTCCGGTGGGGATAAAAAGGAAATCTTTAGGGCCACTTGTGTTCTTTGGCACAACTGGTACCATGCTTGATATCATTATGGGGATCACTCAGTGTGAAAGAGAACATGCCGAACGCCAAGCAAAGCTATCAGAAGCACAAAACTCTGCAACCAATGCTTCTTTATCTGAGACCGGAGCCGAGTATCCGTCTTTTTCCGAAACCGGAGCTGAGTCTTCGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.04

Weight (kDa)

4.7

Isoelectric Point (pI)

22.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 152
AclWI GGATC 1 cut(s) 185
AdeI CACNNNGTG 1 cut(s) 186
AfaI GTAC 2 cut(s) 58, 154
AjnI CCWGG 1 cut(s) 9
AluBI AGCT 3 cut(s) 25, 220, 302
AluI AGCT 3 cut(s) 25, 220, 302
Alw26I GTCTC 1 cut(s) 257
AlwI GGATC 1 cut(s) 185
AoxI GGCC 1 cut(s) 125
ApeKI GCWGC 1 cut(s) 22
Asp718I GGTACC 1 cut(s) 152
AspS9I GGNCC 1 cut(s) 125
AsuNHI GCTAGC 1 cut(s) 88
BaeI ACNNNNGTAYC 2 cut(s) 48, 81
BanI GGYRCC 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 300
BbvI GCAGC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 11
BciVI GTATCC 1 cut(s) 288
BcoDI GTCTC 1 cut(s) 257
BfaI CTAG 1 cut(s) 89
BfuI GTATCC 1 cut(s) 288
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 3 cut(s) 8, 154, 271
BmrFI CCNGG 1 cut(s) 11
BmtI GCTAGC 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 47
BsaI GGTCTC 1 cut(s) 257
BsaWI WCCGGW 3 cut(s) 97, 266, 296
Bse1I ACTGG 1 cut(s) 154
BseBI CCWGG 1 cut(s) 11
BseMII CTCAG 4 cut(s) 84, 197, 252, 294
BseNI ACTGG 1 cut(s) 154
BseXI GCAGC 1 cut(s) 34
BshFI GGCC 1 cut(s) 127
BshNI GGYRCC 1 cut(s) 152
BsiSI CCGG 3 cut(s) 98, 267, 297
BsmAI GTCTC 1 cut(s) 257
BsnI GGCC 1 cut(s) 127
Bso31I GGTCTC 1 cut(s) 257
Bsp143I GATC 1 cut(s) 177
BspANI GGCC 1 cut(s) 127
BspCNI CTCAG 4 cut(s) 83, 196, 253, 295
BspLI GGNNCC 3 cut(s) 8, 154, 271
BspOI GCTAGC 1 cut(s) 92
BspPI GGATC 1 cut(s) 185
BspT107I GGYRCC 1 cut(s) 152
BspTNI GGTCTC 1 cut(s) 257
BsrI ACTGG 1 cut(s) 154
BssMI GATC 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 1 cut(s) 40
BstAPI GCANNNNNTGC 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 4 cut(s) 70, 183, 261, 303
BstKTI GATC 1 cut(s) 180
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 1 cut(s) 177
BstMWI GCNNNNNNNGC 2 cut(s) 89, 248
BstNI CCWGG 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 34
BstV2I GAAGAC 1 cut(s) 300
BstXI CCANNNNNNTGG 1 cut(s) 52
BsuI GTATCC 1 cut(s) 288
BsuRI GGCC 1 cut(s) 127
BtsIMutI CAGTG 2 cut(s) 36, 191
Cac8I GCNNGC 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 125
Csp6I GTAC 2 cut(s) 57, 153
CspCI CAANNNNNGTGG 2 cut(s) 81, 116
CviAII CATG 2 cut(s) 157, 200
CviJI RGCY 7 cut(s) 9, 25, 83, 127, 220, 272, 302
CviKI_1 RGCY 7 cut(s) 9, 25, 83, 127, 220, 272, 302
CviQI GTAC 2 cut(s) 57, 153
DdeI CTNAG 4 cut(s) 70, 183, 261, 303
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
DraIII CACNNNGTG 1 cut(s) 186
Eco31I GGTCTC 1 cut(s) 257
Eco32I GATATC 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 9
EcoRV GATATC 1 cut(s) 166
FaeI CATG 2 cut(s) 160, 203
FaiI YATR 3 cut(s) 158, 173, 201
FalI AAGNNNNNCTT 2 cut(s) 103, 135
FatI CATG 2 cut(s) 156, 199
Fnu4HI GCNGC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 23
FspBI CTAG 1 cut(s) 89
GluI GCNGC 1 cut(s) 23
HaeIII GGCC 1 cut(s) 127
HapII CCGG 3 cut(s) 98, 267, 297
Hin1II CATG 2 cut(s) 160, 203
HinfI GANTC 1 cut(s) 305
HpaII CCGG 3 cut(s) 98, 267, 297
Hpy188I TCNGA 3 cut(s) 226, 262, 292
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4V TGCA 2 cut(s) 36, 242
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 248
HpyF3I CTNAG 4 cut(s) 70, 183, 261, 303
Hsp92II CATG 2 cut(s) 160, 203
KpnI GGTACC 1 cut(s) 156
Kzo9I GATC 1 cut(s) 177
LmnI GCTCC 3 cut(s) 6, 269, 299
LpnPI CCDG 6 cut(s) 23, 63, 111, 135, 280, 310
Lsp1109I GCAGC 1 cut(s) 34
MaeI CTAG 1 cut(s) 89
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 1 cut(s) 300
MluCI AATT 1 cut(s) 93
MlyI GAGTC 1 cut(s) 314
MnlI CCTC 2 cut(s) 7, 22
MseI TTAA 1 cut(s) 18
MspI CCGG 3 cut(s) 98, 267, 297
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
MwoI GCNNNNNNNGC 2 cut(s) 89, 248
NdeII GATC 1 cut(s) 177
NheI GCTAGC 1 cut(s) 88
NlaIII CATG 2 cut(s) 160, 203
NlaIV GGNNCC 3 cut(s) 8, 154, 271
NmeAIII GCCGAG 1 cut(s) 298
NspI RCATGY 1 cut(s) 203
PkrI GCNGC 1 cut(s) 24
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 3 cut(s) 8, 154, 271
PspPI GGNCC 1 cut(s) 125
RsaI GTAC 2 cut(s) 58, 154
RsaNI GTAC 2 cut(s) 57, 153
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 1 cut(s) 23
Sau3AI GATC 1 cut(s) 177
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 11
SetI ASST 4 cut(s) 18, 27, 222, 304
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 1 cut(s) 93
SspMI CTAG 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 9
TaaI ACNGT 1 cut(s) 40
TaqI TCGA 1 cut(s) 311
TasI AATT 1 cut(s) 93
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 2 cut(s) 43, 191
TseI GCWGC 1 cut(s) 22
TspGWI ACGGA 1 cut(s) 270
TspRI CASTG 2 cut(s) 43, 191
XceI RCATGY 1 cut(s) 203
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.