AT1G22480

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011789
Physical Location & Seq
Reverse (-)
7933973 .. 7935382
1410 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G22480.1

Sequence Viewer

Length: 525 bp
ATGAGCACACTTCTTGGTTGTCTTGTCCTCATATTCTCTATGGTCGCACAGGCCTCATCCGCCAGTCTTACGGTGAACTGGTCCCTTGGCACCGACTACACTCCGCTCACCACTGGAAAGACCTTCTCTGTCGGCGATACCATAGTGTTCAATTATGGTGCGGGTCACACGGTGGATGAAGTGAGCGAGAACGACTACAAGAGTTGCACTCTAGGGAACTCCATTACGTCCGACAGCAGCGGAACCACGACCATAGCTCTCACGACCACTGGTCCTCGCTACTTCATCTGTGGAATCCCCGGCCATTGCGCTGCCGGTATGAAGCTCGCAGTCACCGTCGCGTCGAACTCTTCAAACGGTGTAGCTGGTGGCACCACTACACCAACCCCATTCACCGGAGGTGGTGGTGGTTACAATCCCACGACCACACAGGCCATTCCTTGTGCGGCTTGGGCCGTGTCCTGTCCATTACGGGCTTTGGTTGCTACTTGGGCCGTTGTTTTTTATGCTTTGGCTTTGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

174

Amino Acids

17.64

Weight (kDa)

5.39

Isoelectric Point (pI)

18.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 27 - 107 1.3e-22 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011789)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22480 AT1G72230
fragaria_vesca FvH4_5g36400
malus_domestica MD08G1189500.v1.1 MD15G1377000.v1.1
prunus_persica Prupe.1G523700_v2.0.a1
pyrus_communis pycom08g16280 pycom15g33670
rosa_chinensis RchiOBHm_Chr7g0238371
rosa_laevigata RLG00000000914
rosa_multiflora Rmu_sc0001371.1_g000024
rosa_roxburghii Rroxscaffold_3G00223070
rosa_rugosa Rorug07G0312300
rosa_samantha Rh7AG467100 Rh7BG437900 Rh7CG485200 Rh7DG453600
rosa_wichuraiana Rw7G038730 Rw7G038800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 89, 371
AccBSI CCGCTC 1 cut(s) 106
AccII CGCG 1 cut(s) 341
AciI CCGC 5 cut(s) 60, 104, 161, 240, 446
AcoI YGGCCR 1 cut(s) 301
AdeI CACNNNGTG 1 cut(s) 172
AfiI CCNNNNNNNGG 1 cut(s) 395
AgsI TTSAA 2 cut(s) 151, 354
AhdI GACNNNNNGTC 1 cut(s) 270
AluBI AGCT 3 cut(s) 257, 325, 365
AluI AGCT 3 cut(s) 257, 325, 365
Alw21I GWGCWC 1 cut(s) 8
AoxI GGCC 5 cut(s) 51, 301, 432, 453, 492
ApeKI GCWGC 2 cut(s) 237, 311
AspLEI GCGC 1 cut(s) 311
AspS9I GGNCC 4 cut(s) 81, 272, 453, 492
AsuC2I CCSGG 1 cut(s) 300
AsuHPI GGTGA 4 cut(s) 85, 100, 325, 385
AvaII GGWCC 2 cut(s) 81, 272
BaeI ACNNNNGTAYC 2 cut(s) 129, 162
BanI GGYRCC 2 cut(s) 89, 371
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 249, 298
BceAI ACGGC 2 cut(s) 440, 479
BcnI CCSGG 1 cut(s) 300
BfaI CTAG 1 cut(s) 212
BisI GCNGC 3 cut(s) 238, 312, 447
BlsI GCNGC 3 cut(s) 239, 313, 448
Bme1390I CCNGG 1 cut(s) 300
Bme18I GGWCC 2 cut(s) 81, 272
BmeRI GACNNNNNGTC 1 cut(s) 270
BmgT120I GGNCC 4 cut(s) 81, 272, 453, 492
BmiI GGNNCC 4 cut(s) 83, 91, 244, 373
BmrFI CCNGG 1 cut(s) 300
BplI GAGNNNNNCTC 2 cut(s) 193, 225
BpuMI CCSGG 1 cut(s) 300
BsaJI CCNNGG 2 cut(s) 85, 298
BsaWI WCCGGW 1 cut(s) 395
Bsc4I CCNNNNNNNGG 1 cut(s) 395
Bse118I RCCGGY 1 cut(s) 314
Bse1I ACTGG 4 cut(s) 63, 83, 118, 274
Bse3DI GCAATG 1 cut(s) 304
BseDI CCNNGG 2 cut(s) 85, 298
BseGI GGATG 2 cut(s) 56, 181
BseLI CCNNNNNNNGG 1 cut(s) 395
BseMI GCAATG 1 cut(s) 304
BseNI ACTGG 4 cut(s) 63, 83, 118, 274
BseXI GCAGC 2 cut(s) 249, 298
Bsh1236I CGCG 1 cut(s) 341
BshFI GGCC 5 cut(s) 53, 303, 434, 455, 494
BshNI GGYRCC 2 cut(s) 89, 371
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 3 cut(s) 300, 315, 396
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 67
BsnI GGCC 5 cut(s) 53, 303, 434, 455, 494
Bsp1286I GDGCHC 1 cut(s) 8
BspACI CCGC 5 cut(s) 60, 104, 161, 240, 446
BspANI GGCC 5 cut(s) 53, 303, 434, 455, 494
BspFNI CGCG 1 cut(s) 341
BspLI GGNNCC 4 cut(s) 83, 91, 244, 373
BspT107I GGYRCC 2 cut(s) 89, 371
BsrBI CCGCTC 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 304
BsrFI RCCGGY 1 cut(s) 314
BsrI ACTGG 4 cut(s) 63, 83, 118, 274
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 2 cut(s) 85, 298
BssT1I CCWWGG 1 cut(s) 85
Bst4CI ACNGT 4 cut(s) 73, 172, 337, 359
Bst6I CTCTTC 1 cut(s) 355
BstC8I GCNNGC 1 cut(s) 327
BstDEI CTNAG 1 cut(s) 522
BstF5I GGATG 2 cut(s) 56, 181
BstFNI CGCG 1 cut(s) 341
BstHHI GCGC 1 cut(s) 311
BstMWI GCNNNNNNNGC 4 cut(s) 59, 452, 482, 491
BstSCI CCNGG 1 cut(s) 298
BstUI CGCG 1 cut(s) 341
BstV1I GCAGC 2 cut(s) 249, 298
BsuRI GGCC 5 cut(s) 53, 303, 434, 455, 494
BtsCI GGATG 2 cut(s) 56, 181
BtsIMutI CAGTG 2 cut(s) 111, 267
Cac8I GCNNGC 1 cut(s) 327
CfoI GCGC 1 cut(s) 311
Cfr10I RCCGGY 1 cut(s) 314
Cfr13I GGNCC 4 cut(s) 81, 272, 453, 492
CseI GACGC 1 cut(s) 330
DdeI CTNAG 1 cut(s) 522
DraIII CACNNNGTG 1 cut(s) 172
DriI GACNNNNNGTC 1 cut(s) 270
EaeI YGGCCR 1 cut(s) 301
Eam1104I CTCTTC 1 cut(s) 355
Eam1105I GACNNNNNGTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 355
EciI GGCGGA 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 85
Eco147I AGGCCT 1 cut(s) 53
Eco47I GGWCC 2 cut(s) 81, 272
EcoT14I CCWWGG 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 85
FaiI YATR 7 cut(s) 32, 41, 143, 156, 254, 320, 507
FaqI GGGAC 1 cut(s) 67
FauI CCCGC 1 cut(s) 154
Fnu4HI GCNGC 3 cut(s) 238, 312, 447
FokI GGATG 2 cut(s) 43, 188
Fsp4HI GCNGC 3 cut(s) 238, 312, 447
FspBI CTAG 1 cut(s) 212
GlaI GCGC 1 cut(s) 310
GluI GCNGC 3 cut(s) 238, 312, 447
HaeIII GGCC 5 cut(s) 53, 303, 434, 455, 494
HapII CCGG 3 cut(s) 300, 315, 396
HgaI GACGC 1 cut(s) 330
HhaI GCGC 1 cut(s) 311
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HinfI GANTC 1 cut(s) 294
HpaII CCGG 3 cut(s) 300, 315, 396
HphI GGTGA 4 cut(s) 85, 100, 325, 385
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 1 cut(s) 262
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 2 cut(s) 341, 346
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 4 cut(s) 73, 172, 337, 359
HpyCH4IV ACGT 1 cut(s) 227
HpyCH4V TGCA 1 cut(s) 207
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 452, 482, 491
HpyF3I CTNAG 1 cut(s) 522
HpySE526I ACGT 1 cut(s) 227
HspAI GCGC 1 cut(s) 309
Lsp1109I GCAGC 2 cut(s) 249, 298
MaeI CTAG 1 cut(s) 212
MaeII ACGT 1 cut(s) 227
MaeIII GTNAC 3 cut(s) 164, 331, 410
MbiI CCGCTC 1 cut(s) 106
MboII GAAGA 1 cut(s) 342
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 1 cut(s) 151
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 4 cut(s) 38, 64, 285, 392
MspA1I CMGCKG 1 cut(s) 240
MspI CCGG 3 cut(s) 300, 315, 396
MspR9I CCNGG 1 cut(s) 300
MvnI CGCG 1 cut(s) 341
MwoI GCNNNNNNNGC 4 cut(s) 59, 452, 482, 491
NciI CCSGG 1 cut(s) 300
NlaIV GGNNCC 4 cut(s) 83, 91, 244, 373
NmuCI GTSAC 2 cut(s) 164, 331
PceI AGGCCT 1 cut(s) 53
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PfeI GAWTC 1 cut(s) 294
PkrI GCNGC 3 cut(s) 239, 313, 448
PspN4I GGNNCC 4 cut(s) 83, 91, 244, 373
PspPI GGNCC 4 cut(s) 81, 272, 453, 492
SatI GCNGC 3 cut(s) 238, 312, 447
Sau96I GGNCC 4 cut(s) 81, 272, 453, 492
ScrFI CCNGG 1 cut(s) 300
SduI GDGCHC 1 cut(s) 8
SetI ASST 6 cut(s) 125, 230, 259, 327, 367, 403
SinI GGWCC 2 cut(s) 81, 272
Sse9I AATT 1 cut(s) 151
SseBI AGGCCT 1 cut(s) 53
SsiI CCGC 5 cut(s) 60, 104, 161, 240, 446
SspMI CTAG 1 cut(s) 212
StuI AGGCCT 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 298
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 4 cut(s) 73, 172, 337, 359
TaiI ACGT 1 cut(s) 230
TaqI TCGA 1 cut(s) 344
TasI AATT 1 cut(s) 151
TauI GCSGC 1 cut(s) 449
TfiI GAWTC 1 cut(s) 294
TscAI CASTG 2 cut(s) 118, 274
TseFI GTSAC 2 cut(s) 164, 331
TseI GCWGC 2 cut(s) 237, 311
Tsp45I GTSAC 2 cut(s) 164, 331
TspDTI ATGAA 3 cut(s) 192, 274, 335
TspRI CASTG 2 cut(s) 118, 274
VpaK11BI GGWCC 2 cut(s) 81, 272
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.