Prupe.1G523700_v2.0.a1

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011789
Physical Location & Seq
Reverse (-)
42896718 .. 42898352
1635 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G523700.1

Sequence Viewer

Length: 570 bp
ATGGCAGGCACAGGGGCTGCAATTGTGGGCATGTTCCTTGTACTTTCCATGGTCATGATGCCAAGCTGCTTAGCCACTGTCTACACTGTTGGAGACTCCTCTGGCTGGACTAGTGGTGTTGATTATAGCACTTGGACTAGTGGCAAGACCTTTGCAGTTGGTGATAGCCTAGTGTTCAACTATGGAAGTGGGCACACAGTGGATGAAGTGAGTGGAAGTGACTACAAGACATGCACAGTGGGCAATTCAATCACAAGTGATAGCAGTGGAGCCACCACCATCCCTCTCAAGGCTGCTGGGACTCGTTACTTCATTTGTGCTGTGGTTGGGCATTGTGGGATGGGGATGAAGGTTTCTGTGAATGTAGTAGGGTCAGGATCAACAGCAGCACCAACTACCAAGGGTTCACCGTCACCGGCTACTTCCGGCGGTAACTCTACAGTTACTAGCCCTGCAGTTACCACACCGTCAACAACAGGCGTAGACAACAGTCTATCTACCTCTCCGGTTGTGGCTTTGTGGAGTATTTGTGTTACTTGTGTTGCTATTTGTGTGTTGATTCTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

190

Amino Acids

18.8

Weight (kDa)

5.38

Isoelectric Point (pI)

24.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011789)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22480 AT1G72230
fragaria_vesca FvH4_5g36400
malus_domestica MD08G1189500.v1.1 MD15G1377000.v1.1
prunus_persica Prupe.1G523700_v2.0.a1
pyrus_communis pycom08g16280 pycom15g33670
rosa_chinensis RchiOBHm_Chr7g0238371
rosa_laevigata RLG00000000914
rosa_multiflora Rmu_sc0001371.1_g000024
rosa_roxburghii Rroxscaffold_3G00223070
rosa_rugosa Rorug07G0312300
rosa_samantha Rh7AG467100 Rh7BG437900 Rh7CG485200 Rh7DG453600
rosa_wichuraiana Rw7G038730 Rw7G038800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 81, 483
AciI CCGC 1 cut(s) 429
AclWI GGATC 1 cut(s) 385
AdeI CACNNNGTG 1 cut(s) 199
AfaI GTAC 1 cut(s) 42
AfiI CCNNNNNNNGG 2 cut(s) 105, 289
AgsI TTSAA 2 cut(s) 178, 249
AhlI ACTAGT 2 cut(s) 110, 137
AluBI AGCT 1 cut(s) 66
AluI AGCT 1 cut(s) 66
Alw26I GTCTC 1 cut(s) 87
AlwI GGATC 1 cut(s) 385
AlwNI CAGNNNCTG 1 cut(s) 17
ApeKI GCWGC 4 cut(s) 17, 66, 293, 386
AsuHPI GGTGA 3 cut(s) 173, 399, 405
BaeGI GKGCMC 1 cut(s) 195
BbvI GCAGC 4 cut(s) 4, 53, 280, 398
BccI CCATC 2 cut(s) 287, 334
BcoDI GTCTC 1 cut(s) 87
BcuI ACTAGT 2 cut(s) 110, 137
BfaI CTAG 4 cut(s) 111, 138, 170, 447
BfmI CTRYAG 2 cut(s) 438, 453
BisI GCNGC 4 cut(s) 18, 67, 294, 387
BlpI GCTNAGC 1 cut(s) 70
BlsI GCNGC 4 cut(s) 19, 68, 295, 388
BmiI GGNNCC 1 cut(s) 271
BmsI GCATC 1 cut(s) 48
BoxI GACNNNNGTC 1 cut(s) 489
Bpu1102I GCTNAGC 1 cut(s) 70
BpuEI CTTGAG 1 cut(s) 272
BsaJI CCNNGG 2 cut(s) 48, 399
BsaWI WCCGGW 1 cut(s) 505
BsaXI ACNNNNNCTCC 2 cut(s) 514, 544
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 289
Bse118I RCCGGY 1 cut(s) 415
BseDI CCNNGG 2 cut(s) 48, 399
BseGI GGATG 4 cut(s) 208, 279, 345, 351
BseLI CCNNNNNNNGG 2 cut(s) 105, 289
BseRI GAGGAG 1 cut(s) 88
BseSI GKGCMC 1 cut(s) 195
BseXI GCAGC 4 cut(s) 4, 53, 280, 398
BseYI CCCAGC 1 cut(s) 296
BsiSI CCGG 3 cut(s) 416, 426, 506
BslFI GGGAC 1 cut(s) 313
BslI CCNNNNNNNGG 2 cut(s) 105, 289
BsmAI GTCTC 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 313
Bsp1286I GDGCHC 1 cut(s) 195
Bsp143I GATC 1 cut(s) 377
Bsp1720I GCTNAGC 1 cut(s) 70
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 1 cut(s) 429
BspHI TCATGA 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 271
BspMAI CTGCAG 1 cut(s) 457
BspPI GGATC 1 cut(s) 385
BsrFI RCCGGY 1 cut(s) 415
BssAI RCCGGY 1 cut(s) 415
BssECI CCNNGG 2 cut(s) 48, 399
BssMI GATC 1 cut(s) 377
BssT1I CCWWGG 2 cut(s) 48, 399
Bst4CI ACNGT 8 cut(s) 79, 88, 199, 238, 411, 442, 468, 491
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 70
BstDSI CCRYGG 1 cut(s) 48
BstF5I GGATG 4 cut(s) 208, 279, 345, 351
BstKTI GATC 1 cut(s) 380
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 1 cut(s) 377
BstMWI GCNNNNNNNGC 1 cut(s) 240
BstNSI RCATGY 2 cut(s) 34, 234
BstPAI GACNNNNGTC 1 cut(s) 489
BstSFI CTRYAG 2 cut(s) 438, 453
BstSLI GKGCMC 1 cut(s) 195
BstV1I GCAGC 4 cut(s) 4, 53, 280, 398
BtgI CCRYGG 1 cut(s) 48
BtsCI GGATG 4 cut(s) 208, 279, 345, 351
BtsI GCAGTG 1 cut(s) 271
BtsIMutI CAGTG 5 cut(s) 75, 84, 204, 243, 271
Cac8I GCNNGC 1 cut(s) 7
CaiI CAGNNNCTG 1 cut(s) 17
CciI TCATGA 1 cut(s) 54
Cfr10I RCCGGY 1 cut(s) 415
Csp6I GTAC 1 cut(s) 41
CviAII CATG 4 cut(s) 31, 49, 55, 231
CviQI GTAC 1 cut(s) 41
DdeI CTNAG 1 cut(s) 70
DpnI GATC 1 cut(s) 379
DpnII GATC 1 cut(s) 377
DraIII CACNNNGTG 1 cut(s) 199
Eco130I CCWWGG 2 cut(s) 48, 399
EcoT14I CCWWGG 2 cut(s) 48, 399
ErhI CCWWGG 2 cut(s) 48, 399
FaeI CATG 4 cut(s) 34, 52, 58, 234
FaiI YATR 7 cut(s) 32, 50, 56, 126, 183, 232, 568
FaqI GGGAC 1 cut(s) 313
FatI CATG 4 cut(s) 30, 48, 54, 230
FblI GTMKAC 2 cut(s) 81, 483
Fnu4HI GCNGC 4 cut(s) 18, 67, 294, 387
FokI GGATG 4 cut(s) 215, 266, 352, 358
Fsp4HI GCNGC 4 cut(s) 18, 67, 294, 387
FspBI CTAG 4 cut(s) 111, 138, 170, 447
GluI GCNGC 4 cut(s) 18, 67, 294, 387
GsaI CCCAGC 1 cut(s) 300
HapII CCGG 3 cut(s) 416, 426, 506
Hin1II CATG 4 cut(s) 34, 52, 58, 234
HincII GTYRAC 1 cut(s) 471
HindII GTYRAC 1 cut(s) 471
HinfI GANTC 3 cut(s) 95, 301, 559
HpaII CCGG 3 cut(s) 416, 426, 506
HphI GGTGA 3 cut(s) 173, 399, 405
Hpy166II GTNNAC 4 cut(s) 82, 407, 471, 484
Hpy188III TCNNGA 2 cut(s) 55, 375
Hpy8I GTNNAC 4 cut(s) 82, 407, 471, 484
HpyAV CCTTC 1 cut(s) 343
HpyCH4III ACNGT 8 cut(s) 79, 88, 199, 238, 411, 442, 468, 491
HpyCH4V TGCA 4 cut(s) 20, 155, 234, 455
HpyF10VI GCNNNNNNNGC 1 cut(s) 240
HpyF3I CTNAG 1 cut(s) 70
Hsp92II CATG 4 cut(s) 34, 52, 58, 234
Kzo9I GATC 1 cut(s) 377
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 9 cut(s) 87, 91, 282, 360, 429, 439, 462, 465, 519
Lsp1109I GCAGC 4 cut(s) 4, 53, 280, 398
LweI GCATC 1 cut(s) 48
MaeI CTAG 4 cut(s) 111, 138, 170, 447
MaeIII GTNAC 7 cut(s) 218, 305, 411, 431, 442, 457, 532
MalI GATC 1 cut(s) 379
MboI GATC 1 cut(s) 377
MfeI CAATTG 1 cut(s) 21
MhlI GDGCHC 1 cut(s) 195
MluCI AATT 2 cut(s) 21, 244
MlyI GAGTC 2 cut(s) 89, 295
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 3 cut(s) 109, 294, 511
MslI CAYNNNNRTG 1 cut(s) 53
MspI CCGG 3 cut(s) 416, 426, 506
MunI CAATTG 1 cut(s) 21
MwoI GCNNNNNNNGC 1 cut(s) 240
NcoI CCATGG 1 cut(s) 48
NdeII GATC 1 cut(s) 377
NlaIII CATG 4 cut(s) 34, 52, 58, 234
NlaIV GGNNCC 1 cut(s) 271
NmuCI GTSAC 2 cut(s) 218, 411
NspI RCATGY 2 cut(s) 34, 234
PagI TCATGA 1 cut(s) 54
PfeI GAWTC 1 cut(s) 559
PkrI GCNGC 4 cut(s) 19, 68, 295, 388
PleI GAGTC 2 cut(s) 89, 295
PpsI GAGTC 2 cut(s) 89, 295
PshAI GACNNNNGTC 1 cut(s) 489
PspFI CCCAGC 1 cut(s) 296
PspN4I GGNNCC 1 cut(s) 271
PstI CTGCAG 1 cut(s) 457
PstNI CAGNNNCTG 1 cut(s) 17
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
RseI CAYNNNNRTG 1 cut(s) 53
SatI GCNGC 4 cut(s) 18, 67, 294, 387
Sau3AI GATC 1 cut(s) 377
SchI GAGTC 2 cut(s) 89, 295
SduI GDGCHC 1 cut(s) 195
SetI ASST 4 cut(s) 68, 152, 354, 503
SfaNI GCATC 1 cut(s) 48
SfcI CTRYAG 2 cut(s) 438, 453
SmiMI CAYNNNNRTG 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
SpeI ACTAGT 2 cut(s) 110, 137
Sse9I AATT 2 cut(s) 21, 244
SsiI CCGC 1 cut(s) 429
SspMI CTAG 4 cut(s) 111, 138, 170, 447
StyI CCWWGG 2 cut(s) 48, 399
TaaI ACNGT 8 cut(s) 79, 88, 199, 238, 411, 442, 468, 491
TasI AATT 2 cut(s) 21, 244
TatI WGTACW 1 cut(s) 40
TfiI GAWTC 1 cut(s) 559
TscAI CASTG 5 cut(s) 82, 91, 204, 243, 271
TseFI GTSAC 2 cut(s) 218, 411
TseI GCWGC 4 cut(s) 17, 66, 293, 386
Tsp45I GTSAC 2 cut(s) 218, 411
TspDTI ATGAA 4 cut(s) 219, 301, 362, 555
TspRI CASTG 5 cut(s) 82, 91, 204, 243, 271
XceI RCATGY 2 cut(s) 34, 234
XmiI GTMKAC 2 cut(s) 81, 483
XspI CTAG 4 cut(s) 111, 138, 170, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.