Rroxscaffold_3G00223070

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0011789
Physical Location & Seq
Reverse (-)
6213915 .. 6215072
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00223070.1

Sequence Viewer

Length: 570 bp
ATGGCAGGCATAGGAGCCAGAATTGTGGGTTTAGTCCTTGTTTTTGGCATGGTCATGATGCCAAGCTTGGCCAAAGACTACACTGTTGGAGACACCTCTGGCTGGGCTACTGGTGTTGATTACACCACTTGGACTAGTGACAAGACCTTCGCAGTCGGCGATAACCTAGTGTTCAACTATGGAAGTACGCACACAGTGGATGAAGTGAGTGGTAGTGACTACAAGTCTTGCACAACAGGCAACTCAATCACTAGTGACAGCAGCGGTGCCACCACCATTCCTCTGAAGACTGCTGGGACTCATTACTTCATTTGCGGCGTTGTTGGGCATTGTGGGATGGGCATGAAGCTCTCTGTGACCGTTGGATCAGGATCAACCGCCGCTGCGCCAGCTGGCAAGGGTGCATCAACGCCGCCTTCCACAGACGGTAGCAACACCACGGTTGACACTCCGGCAGTGACCACACCCACAGCCACATCCACTGGTCTAGGAACTAGTCTCTCTAGCTCTCCTATTATGGCTTTGATGACTATTGCTGGGTTTGTTTTGAGTGTGTTGGTGCTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

189

Amino Acids

18.87

Weight (kDa)

4.99

Isoelectric Point (pI)

13.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 35 - 115 6.5e-25 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011789)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22480 AT1G72230
fragaria_vesca FvH4_5g36400
malus_domestica MD08G1189500.v1.1 MD15G1377000.v1.1
prunus_persica Prupe.1G523700_v2.0.a1
pyrus_communis pycom08g16280 pycom15g33670
rosa_chinensis RchiOBHm_Chr7g0238371
rosa_laevigata RLG00000000914
rosa_multiflora Rmu_sc0001371.1_g000024
rosa_roxburghii Rroxscaffold_3G00223070
rosa_rugosa Rorug07G0312300
rosa_samantha Rh7AG467100 Rh7BG437900 Rh7CG485200 Rh7DG453600
rosa_wichuraiana Rw7G038730 Rw7G038800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 266
AciI CCGC 5 cut(s) 264, 315, 378, 381, 413
AclWI GGATC 2 cut(s) 373, 379
AcoI YGGCCR 1 cut(s) 69
AcuI CTGAAG 1 cut(s) 305
AdeI CACNNNGTG 1 cut(s) 196
AfaI GTAC 1 cut(s) 187
AfiI CCNNNNNNNGG 1 cut(s) 102
AgsI TTSAA 1 cut(s) 175
AhdI GACNNNNNGTC 1 cut(s) 223
AhlI ACTAGT 3 cut(s) 134, 251, 494
AluBI AGCT 4 cut(s) 66, 349, 392, 507
AluI AGCT 4 cut(s) 66, 349, 392, 507
Alw26I GTCTC 2 cut(s) 84, 503
AlwI GGATC 2 cut(s) 373, 379
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 2 cut(s) 261, 383
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
AspLEI GCGC 1 cut(s) 388
BalI TGGCCA 1 cut(s) 71
BanI GGYRCC 1 cut(s) 266
BbsI GAAGAC 1 cut(s) 293
BbvI GCAGC 2 cut(s) 273, 370
BccI CCATC 1 cut(s) 331
BcoDI GTCTC 2 cut(s) 84, 503
BcuI ACTAGT 3 cut(s) 134, 251, 494
BfaI CTAG 6 cut(s) 135, 167, 252, 488, 495, 504
BisI GCNGC 5 cut(s) 262, 316, 381, 384, 413
BlsI GCNGC 5 cut(s) 263, 317, 382, 385, 414
BmeRI GACNNNNNGTC 1 cut(s) 223
BmiI GGNNCC 2 cut(s) 16, 268
BmsI GCATC 2 cut(s) 48, 413
BpiI GAAGAC 1 cut(s) 293
BsaBI GATNNNNATC 1 cut(s) 370
BsaJI CCNNGG 1 cut(s) 438
Bsc4I CCNNNNNNNGG 1 cut(s) 102
Bse1I ACTGG 2 cut(s) 115, 487
Bse8I GATNNNNATC 1 cut(s) 370
BseDI CCNNGG 1 cut(s) 438
BseGI GGATG 3 cut(s) 205, 342, 476
BseJI GATNNNNATC 1 cut(s) 370
BseLI CCNNNNNNNGG 1 cut(s) 102
BseNI ACTGG 2 cut(s) 115, 487
BseXI GCAGC 2 cut(s) 273, 370
BseYI CCCAGC 3 cut(s) 102, 293, 536
BshFI GGCC 1 cut(s) 71
BshNI GGYRCC 1 cut(s) 266
BsiSI CCGG 1 cut(s) 452
BslFI GGGAC 1 cut(s) 310
BslI CCNNNNNNNGG 1 cut(s) 102
BsmAI GTCTC 2 cut(s) 84, 503
BsmFI GGGAC 1 cut(s) 310
BsnI GGCC 1 cut(s) 71
Bsp143I GATC 2 cut(s) 365, 371
BspACI CCGC 5 cut(s) 264, 315, 378, 381, 413
BspANI GGCC 1 cut(s) 71
BspHI TCATGA 1 cut(s) 54
BspLI GGNNCC 2 cut(s) 16, 268
BspPI GGATC 2 cut(s) 373, 379
BspT107I GGYRCC 1 cut(s) 266
BsrI ACTGG 2 cut(s) 115, 487
BssECI CCNNGG 1 cut(s) 438
BssMI GATC 2 cut(s) 365, 371
Bst4CI ACNGT 5 cut(s) 85, 196, 361, 428, 442
BstC8I GCNNGC 3 cut(s) 7, 390, 394
BstDSI CCRYGG 1 cut(s) 438
BstF5I GGATG 3 cut(s) 205, 342, 476
BstHHI GCGC 1 cut(s) 388
BstKTI GATC 2 cut(s) 368, 374
BstMAI GTCTC 2 cut(s) 84, 503
BstMBI GATC 2 cut(s) 365, 371
BstMWI GCNNNNNNNGC 2 cut(s) 237, 389
BstV1I GCAGC 2 cut(s) 273, 370
BstV2I GAAGAC 1 cut(s) 293
BstXI CCANNNNNNTGG 1 cut(s) 25
BsuRI GGCC 1 cut(s) 71
BtgI CCRYGG 1 cut(s) 438
BtsCI GGATG 3 cut(s) 205, 342, 476
BtsI GCAGTG 1 cut(s) 462
BtsIMutI CAGTG 4 cut(s) 81, 201, 462, 480
Cac8I GCNNGC 3 cut(s) 7, 390, 394
CciI TCATGA 1 cut(s) 54
CfoI GCGC 1 cut(s) 388
Csp6I GTAC 1 cut(s) 186
CviAII CATG 3 cut(s) 49, 55, 343
CviQI GTAC 1 cut(s) 186
DpnI GATC 2 cut(s) 367, 373
DpnII GATC 2 cut(s) 365, 371
DraIII CACNNNGTG 1 cut(s) 196
DriI GACNNNNNGTC 1 cut(s) 223
EaeI YGGCCR 1 cut(s) 69
Eam1105I GACNNNNNGTC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 305
FaeI CATG 3 cut(s) 52, 58, 346
FaiI YATR 7 cut(s) 11, 50, 56, 180, 344, 518, 568
FaqI GGGAC 1 cut(s) 310
FatI CATG 3 cut(s) 48, 54, 342
Fnu4HI GCNGC 5 cut(s) 262, 316, 381, 384, 413
FokI GGATG 3 cut(s) 212, 349, 463
Fsp4HI GCNGC 5 cut(s) 262, 316, 381, 384, 413
FspBI CTAG 6 cut(s) 135, 167, 252, 488, 495, 504
GlaI GCGC 1 cut(s) 387
GluI GCNGC 5 cut(s) 262, 316, 381, 384, 413
GsaI CCCAGC 3 cut(s) 106, 297, 540
HaeIII GGCC 1 cut(s) 71
HapII CCGG 1 cut(s) 452
HhaI GCGC 1 cut(s) 388
Hin1II CATG 3 cut(s) 52, 58, 346
Hin6I GCGC 1 cut(s) 386
HinP1I GCGC 1 cut(s) 386
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HindIII AAGCTT 1 cut(s) 64
HinfI GANTC 1 cut(s) 298
HpaII CCGG 1 cut(s) 452
Hpy166II GTNNAC 1 cut(s) 445
Hpy188I TCNGA 1 cut(s) 285
Hpy188III TCNNGA 2 cut(s) 55, 369
Hpy8I GTNNAC 1 cut(s) 445
HpyAV CCTTC 2 cut(s) 157, 426
HpyCH4III ACNGT 5 cut(s) 85, 196, 361, 428, 442
HpyCH4V TGCA 2 cut(s) 231, 404
HpyF10VI GCNNNNNNNGC 2 cut(s) 237, 389
Hsp92II CATG 3 cut(s) 52, 58, 346
HspAI GCGC 1 cut(s) 386
Kzo9I GATC 2 cut(s) 365, 371
LmnI GCTCC 1 cut(s) 14
Lsp1109I GCAGC 2 cut(s) 273, 370
LweI GCATC 2 cut(s) 48, 413
MaeI CTAG 6 cut(s) 135, 167, 252, 488, 495, 504
MaeIII GTNAC 5 cut(s) 137, 215, 254, 355, 457
MalI GATC 2 cut(s) 367, 373
MboI GATC 2 cut(s) 365, 371
MboII GAAGA 1 cut(s) 298
MlsI TGGCCA 1 cut(s) 71
MluCI AATT 1 cut(s) 21
MluNI TGGCCA 1 cut(s) 71
MlyI GAGTC 1 cut(s) 292
MmeI TCCRAC 2 cut(s) 67, 343
MnlI CCTC 2 cut(s) 106, 291
Mox20I TGGCCA 1 cut(s) 71
MscI TGGCCA 1 cut(s) 71
MslI CAYNNNNRTG 1 cut(s) 53
Msp20I TGGCCA 1 cut(s) 71
MspA1I CMGCKG 3 cut(s) 264, 383, 392
MspI CCGG 1 cut(s) 452
MwoI GCNNNNNNNGC 2 cut(s) 237, 389
NdeII GATC 2 cut(s) 365, 371
NlaIII CATG 3 cut(s) 52, 58, 346
NlaIV GGNNCC 2 cut(s) 16, 268
NmuCI GTSAC 5 cut(s) 137, 215, 254, 355, 457
PagI TCATGA 1 cut(s) 54
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PkrI GCNGC 5 cut(s) 263, 317, 382, 385, 414
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
PspFI CCCAGC 3 cut(s) 102, 293, 536
PspN4I GGNNCC 2 cut(s) 16, 268
PvuII CAGCTG 1 cut(s) 392
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
RseI CAYNNNNRTG 1 cut(s) 53
SatI GCNGC 5 cut(s) 262, 316, 381, 384, 413
Sau3AI GATC 2 cut(s) 365, 371
SchI GAGTC 1 cut(s) 292
SetI ASST 7 cut(s) 68, 98, 149, 168, 351, 394, 509
SfaNI GCATC 2 cut(s) 48, 413
SmiMI CAYNNNNRTG 1 cut(s) 53
SpeI ACTAGT 3 cut(s) 134, 251, 494
Sse9I AATT 1 cut(s) 21
SsiI CCGC 5 cut(s) 264, 315, 378, 381, 413
SspMI CTAG 6 cut(s) 135, 167, 252, 488, 495, 504
TaaI ACNGT 5 cut(s) 85, 196, 361, 428, 442
TasI AATT 1 cut(s) 21
TauI GCSGC 3 cut(s) 318, 383, 415
TscAI CASTG 4 cut(s) 88, 201, 462, 487
TseFI GTSAC 5 cut(s) 137, 215, 254, 355, 457
TseI GCWGC 2 cut(s) 261, 383
Tsp45I GTSAC 5 cut(s) 137, 215, 254, 355, 457
TspDTI ATGAA 4 cut(s) 216, 298, 359, 555
TspRI CASTG 4 cut(s) 88, 201, 462, 487
XspI CTAG 6 cut(s) 135, 167, 252, 488, 495, 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.