MD08G1189500.v1.1

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0011789
Physical Location & Seq
Reverse (-)
23915893 .. 23917129
1237 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1189500.v1.1.491

Sequence Viewer

Length: 555 bp
ATGGCCAGAATTGTGGGTTTAGTCCTGGTTGTTGCCATGGTCATGATGCCAAGATGCTTAGCCACCGTGTACACCGTTGGAGACTCCTCTGGGTGGGCTAGTGGTGTGGATTATAGCACTTGGACTAGTGGCAAGACCTTTAAAGTTGGTGACAGCCTGGTGTTCAACTATGGAAGTGGGCACACGGTGGACGAAGTGACTGACAGTGACTACAAAACTTGCACTGTGGGAAATTCAATTACAAGTGACAGCAGCGGAACGACCACCATCCCCCTCAAGACTGCTGGGACTCATAACTACATTTGTGGCTCGGTTGGGCATTGTACGATGGGGATGAAGCTTTCTGTGACTGTAGCGTCAGGATCAACCGCAGCACCATCTGGCAACGGTAAATCAACATCCGGTGGTTCCGACGGTAACTCTACAATTACCACCCCCGCAAGTACCACCAAACCCTCATCAACTGGTGATGGGAGTAGCCACTCTAGCTCTCTTGTTGTGACTTTGTGGAGTGTTATTAGTTTGGTTGGTTTTTGTATGTTCCTTCTAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

185

Amino Acids

18.69

Weight (kDa)

6.37

Isoelectric Point (pI)

20.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 32 - 112 2.6e-23 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011789)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22480 AT1G72230
fragaria_vesca FvH4_5g36400
malus_domestica MD08G1189500.v1.1 MD15G1377000.v1.1
prunus_persica Prupe.1G523700_v2.0.a1
pyrus_communis pycom08g16280 pycom15g33670
rosa_chinensis RchiOBHm_Chr7g0238371
rosa_laevigata RLG00000000914
rosa_multiflora Rmu_sc0001371.1_g000024
rosa_roxburghii Rroxscaffold_3G00223070
rosa_rugosa Rorug07G0312300
rosa_samantha Rh7AG467100 Rh7BG437900 Rh7CG485200 Rh7DG453600
rosa_wichuraiana Rw7G038730 Rw7G038800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 355
AciI CCGC 3 cut(s) 255, 369, 438
AclWI GGATC 1 cut(s) 370
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 232
AdeI CACNNNGTG 1 cut(s) 187
AfaI GTAC 3 cut(s) 71, 325, 445
AfiI CCNNNNNNNGG 1 cut(s) 93
AgsI TTSAA 2 cut(s) 166, 237
AhlI ACTAGT 1 cut(s) 125
AjnI CCWGG 2 cut(s) 24, 156
AluBI AGCT 2 cut(s) 340, 489
AluI AGCT 2 cut(s) 340, 489
Alw26I GTCTC 1 cut(s) 75
AlwI GGATC 1 cut(s) 370
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 252, 371
ApoI RAATTY 1 cut(s) 232
AsuHPI GGTGA 2 cut(s) 161, 479
BaeGI GKGCMC 1 cut(s) 183
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 2 cut(s) 264, 383
BccI CCATC 4 cut(s) 275, 322, 385, 464
BciT130I CCWGG 2 cut(s) 26, 158
BcoDI GTCTC 1 cut(s) 75
BcuI ACTAGT 1 cut(s) 125
BfaI CTAG 3 cut(s) 99, 126, 486
BfmI CTRYAG 1 cut(s) 351
BisI GCNGC 2 cut(s) 253, 372
BlpI GCTNAGC 1 cut(s) 58
BlsI GCNGC 2 cut(s) 254, 373
Bme1390I CCNGG 2 cut(s) 26, 158
BmiI GGNNCC 1 cut(s) 409
BmrFI CCNGG 2 cut(s) 26, 158
BmsI GCATC 2 cut(s) 36, 44
Bpu1102I GCTNAGC 1 cut(s) 58
BpuEI CTTGAG 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 401
Bsc4I CCNNNNNNNGG 1 cut(s) 93
Bse1I ACTGG 1 cut(s) 469
BseBI CCWGG 2 cut(s) 26, 158
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 3 cut(s) 267, 339, 398
BseLI CCNNNNNNNGG 1 cut(s) 93
BseNI ACTGG 1 cut(s) 469
BseRI GAGGAG 1 cut(s) 76
BseSI GKGCMC 1 cut(s) 183
BseXI GCAGC 2 cut(s) 264, 383
BseYI CCCAGC 1 cut(s) 284
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 402
BslFI GGGAC 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 93
BsmAI GTCTC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 301
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 183
Bsp1407I TGTACA 1 cut(s) 69
Bsp143I GATC 1 cut(s) 362
Bsp1720I GCTNAGC 1 cut(s) 58
Bsp19I CCATGG 1 cut(s) 36
BspACI CCGC 3 cut(s) 255, 369, 438
BspANI GGCC 1 cut(s) 5
BspHI TCATGA 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 409
BspPI GGATC 1 cut(s) 370
BsrGI TGTACA 1 cut(s) 69
BsrI ACTGG 1 cut(s) 469
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 1 cut(s) 362
BssT1I CCWWGG 1 cut(s) 36
Bst2UI CCWGG 2 cut(s) 26, 158
Bst4CI ACNGT 8 cut(s) 67, 76, 187, 206, 226, 352, 389, 416
BstAUI TGTACA 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 58
BstDSI CCRYGG 1 cut(s) 36
BstF5I GGATG 3 cut(s) 267, 339, 398
BstKTI GATC 1 cut(s) 365
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 1 cut(s) 362
BstMWI GCNNNNNNNGC 1 cut(s) 486
BstNI CCWGG 2 cut(s) 26, 158
BstSCI CCNGG 2 cut(s) 24, 156
BstSFI CTRYAG 1 cut(s) 351
BstSLI GKGCMC 1 cut(s) 183
BstV1I GCAGC 2 cut(s) 264, 383
BstXI CCANNNNNNTGG 1 cut(s) 13
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 36
BtsCI GGATG 3 cut(s) 267, 339, 398
BtsIMutI CAGTG 2 cut(s) 211, 222
CciI TCATGA 1 cut(s) 42
CseI GACGC 1 cut(s) 345
Csp6I GTAC 3 cut(s) 70, 324, 444
CviAII CATG 2 cut(s) 37, 43
CviJI RGCY 8 cut(s) 5, 62, 98, 156, 309, 340, 480, 489
CviKI_1 RGCY 8 cut(s) 5, 62, 98, 156, 309, 340, 480, 489
CviQI GTAC 3 cut(s) 70, 324, 444
DdeI CTNAG 1 cut(s) 58
DpnI GATC 1 cut(s) 364
DpnII GATC 1 cut(s) 362
DraI TTTAAA 1 cut(s) 142
DraIII CACNNNGTG 1 cut(s) 187
DrdI GACNNNNNNGTC 1 cut(s) 355
DseDI GACNNNNNNGTC 1 cut(s) 355
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 36
EcoRII CCWGG 2 cut(s) 24, 156
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 2 cut(s) 40, 46
FaiI YATR 6 cut(s) 38, 44, 114, 171, 294, 539
FaqI GGGAC 1 cut(s) 301
FatI CATG 2 cut(s) 36, 42
FauI CCCGC 1 cut(s) 445
Fnu4HI GCNGC 2 cut(s) 253, 372
FokI GGATG 3 cut(s) 254, 346, 385
Fsp4HI GCNGC 2 cut(s) 253, 372
FspBI CTAG 3 cut(s) 99, 126, 486
GluI GCNGC 2 cut(s) 253, 372
GsaI CCCAGC 1 cut(s) 288
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 402
HgaI GACGC 1 cut(s) 345
Hin1II CATG 2 cut(s) 40, 46
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 2 cut(s) 83, 289
HpaII CCGG 1 cut(s) 402
HphI GGTGA 2 cut(s) 161, 479
Hpy166II GTNNAC 3 cut(s) 70, 72, 190
Hpy188I TCNGA 1 cut(s) 412
Hpy188III TCNNGA 3 cut(s) 43, 277, 360
Hpy8I GTNNAC 3 cut(s) 70, 72, 190
Hpy99I CGWCG 1 cut(s) 416
HpyAV CCTTC 1 cut(s) 554
HpyCH4III ACNGT 8 cut(s) 67, 76, 187, 206, 226, 352, 389, 416
HpyCH4V TGCA 1 cut(s) 222
HpyF10VI GCNNNNNNNGC 1 cut(s) 486
HpyF3I CTNAG 1 cut(s) 58
Hsp92II CATG 2 cut(s) 40, 46
Kzo9I GATC 1 cut(s) 362
Lsp1109I GCAGC 2 cut(s) 264, 383
LweI GCATC 2 cut(s) 36, 44
MaeI CTAG 3 cut(s) 99, 126, 486
MaeIII GTNAC 7 cut(s) 149, 196, 206, 245, 346, 416, 499
MalI GATC 1 cut(s) 364
MboI GATC 1 cut(s) 362
MhlI GDGCHC 1 cut(s) 183
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 9, 232, 237, 426, 549
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 77, 283
MmeI TCCRAC 2 cut(s) 58, 435
MnlI CCTC 3 cut(s) 97, 284, 466
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 141, 553
MslI CAYNNNNRTG 1 cut(s) 41
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 255
MspI CCGG 1 cut(s) 402
MspR9I CCNGG 2 cut(s) 26, 158
MvaI CCWGG 2 cut(s) 26, 158
MwoI GCNNNNNNNGC 1 cut(s) 486
NcoI CCATGG 1 cut(s) 36
NdeII GATC 1 cut(s) 362
NlaIII CATG 2 cut(s) 40, 46
NlaIV GGNNCC 1 cut(s) 409
NmuCI GTSAC 6 cut(s) 149, 196, 206, 245, 346, 499
PagI TCATGA 1 cut(s) 42
PkrI GCNGC 2 cut(s) 254, 373
PleI GAGTC 2 cut(s) 77, 283
PpsI GAGTC 2 cut(s) 77, 283
Psp6I CCWGG 2 cut(s) 24, 156
PspFI CCCAGC 1 cut(s) 284
PspGI CCWGG 2 cut(s) 24, 156
PspN4I GGNNCC 1 cut(s) 409
RsaI GTAC 3 cut(s) 71, 325, 445
RsaNI GTAC 3 cut(s) 70, 324, 444
RseI CAYNNNNRTG 1 cut(s) 41
SaqAI TTAA 2 cut(s) 141, 553
SatI GCNGC 2 cut(s) 253, 372
Sau3AI GATC 1 cut(s) 362
SchI GAGTC 2 cut(s) 77, 283
ScrFI CCNGG 2 cut(s) 26, 158
SduI GDGCHC 1 cut(s) 183
SetI ASST 3 cut(s) 140, 342, 491
SfaNI GCATC 2 cut(s) 36, 44
SfcI CTRYAG 1 cut(s) 351
SmiMI CAYNNNNRTG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
SpeI ACTAGT 1 cut(s) 125
Sse9I AATT 5 cut(s) 9, 232, 237, 426, 549
SsiI CCGC 3 cut(s) 255, 369, 438
SspMI CTAG 3 cut(s) 99, 126, 486
StyD4I CCNGG 2 cut(s) 24, 156
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 8 cut(s) 67, 76, 187, 206, 226, 352, 389, 416
TasI AATT 5 cut(s) 9, 232, 237, 426, 549
TatI WGTACW 1 cut(s) 69
Tru1I TTAA 2 cut(s) 141, 553
Tru9I TTAA 2 cut(s) 141, 553
TscAI CASTG 2 cut(s) 211, 229
TseFI GTSAC 6 cut(s) 149, 196, 206, 245, 346, 499
TseI GCWGC 2 cut(s) 252, 371
Tsp45I GTSAC 6 cut(s) 149, 196, 206, 245, 346, 499
TspDTI ATGAA 1 cut(s) 350
TspRI CASTG 2 cut(s) 211, 229
XapI RAATTY 1 cut(s) 232
XspI CTAG 3 cut(s) 99, 126, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.