RLG00000000914

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0011789
Physical Location & Seq
Reverse (-)
7970613 .. 7971501
889 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000914

Sequence Viewer

Length: 570 bp
ATGGCAGGCATGGGAGCCAGAATTGTGGGTATAGTCCTTGTTTTTGGCATGGTCATGATGCCAAGCTTGGCCAAAGACTACACTGTTGGAGACACCTCTGGCTGGGCTACAGGTGTTGATTACACCACTTGGACTAGTGACAAGACCTTCGCAGTCGGCGATAACCTAGTGTTCAACTATGGAAGTGGGCACACAGTGGATGAAGTGAGTGGTAGTGACTACAAGTCTTGCACAACAGGCAACTCAATCACTAGTGACAGCAGCGGTGCCACCACCATTCCTCTCAAGACTGCTGGGACTCATTACTTCATTTGTGGCGTTGTTGGGCATTGTGGGATGGGCATGAAGCTCTCTGTGACCGTTGGATCAGGATCAACCGCCGCCGCGCCAGCTGGCAAGGGTGCACCAACGCCGCCTTCCACAGACGGTAGCAACACCACGGTGGACACTCCGGCAATGACCACACCCACAGCCACATCCACTGGTCTAGGAACTAGTATCTCTAGCTCTCCTATTATGGCTTTGATGACTATTGCTGGGGTTGTTTTGAGTGTGTTGGTGCTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

190

Amino Acids

18.84

Weight (kDa)

4.99

Isoelectric Point (pI)

14.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 35 - 115 1e-24 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011789)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22480 AT1G72230
fragaria_vesca FvH4_5g36400
malus_domestica MD08G1189500.v1.1 MD15G1377000.v1.1
prunus_persica Prupe.1G523700_v2.0.a1
pyrus_communis pycom08g16280 pycom15g33670
rosa_chinensis RchiOBHm_Chr7g0238371
rosa_laevigata RLG00000000914
rosa_multiflora Rmu_sc0001371.1_g000024
rosa_roxburghii Rroxscaffold_3G00223070
rosa_rugosa Rorug07G0312300
rosa_samantha Rh7AG467100 Rh7BG437900 Rh7CG485200 Rh7DG453600
rosa_wichuraiana Rw7G038730 Rw7G038800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 266
AccII CGCG 1 cut(s) 386
AciI CCGC 5 cut(s) 264, 378, 381, 384, 413
AclWI GGATC 2 cut(s) 373, 379
AcoI YGGCCR 1 cut(s) 69
AdeI CACNNNGTG 1 cut(s) 196
AfiI CCNNNNNNNGG 1 cut(s) 102
AgsI TTSAA 1 cut(s) 175
AhdI GACNNNNNGTC 1 cut(s) 223
AhlI ACTAGT 3 cut(s) 134, 251, 494
AjuI GAANNNNNNNTTGG 2 cut(s) 400, 432
AleI CACNNNNGTG 1 cut(s) 440
AluBI AGCT 4 cut(s) 66, 349, 392, 507
AluI AGCT 4 cut(s) 66, 349, 392, 507
Alw21I GWGCWC 1 cut(s) 406
Alw26I GTCTC 1 cut(s) 84
Alw44I GTGCAC 1 cut(s) 402
AlwI GGATC 2 cut(s) 373, 379
AoxI GGCC 1 cut(s) 69
ApaLI GTGCAC 1 cut(s) 402
ApeKI GCWGC 1 cut(s) 261
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
AspLEI GCGC 1 cut(s) 388
BaeGI GKGCMC 2 cut(s) 192, 406
BalI TGGCCA 1 cut(s) 71
BanI GGYRCC 1 cut(s) 266
Bbv12I GWGCWC 1 cut(s) 406
BbvI GCAGC 1 cut(s) 273
BccI CCATC 1 cut(s) 331
BcoDI GTCTC 1 cut(s) 84
BcuI ACTAGT 3 cut(s) 134, 251, 494
BfaI CTAG 6 cut(s) 135, 167, 252, 488, 495, 504
BfmI CTRYAG 1 cut(s) 108
BisI GCNGC 4 cut(s) 262, 381, 384, 413
BlsI GCNGC 4 cut(s) 263, 382, 385, 414
BmeRI GACNNNNNGTC 1 cut(s) 223
BmiI GGNNCC 2 cut(s) 16, 268
BmsI GCATC 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 269
BsaBI GATNNNNATC 1 cut(s) 370
BsaJI CCNNGG 1 cut(s) 438
Bsc4I CCNNNNNNNGG 1 cut(s) 102
Bse1I ACTGG 1 cut(s) 487
Bse3DI GCAATG 1 cut(s) 462
Bse8I GATNNNNATC 1 cut(s) 370
BseDI CCNNGG 1 cut(s) 438
BseGI GGATG 3 cut(s) 205, 342, 476
BseJI GATNNNNATC 1 cut(s) 370
BseLI CCNNNNNNNGG 1 cut(s) 102
BseMI GCAATG 1 cut(s) 462
BseNI ACTGG 1 cut(s) 487
BseSI GKGCMC 2 cut(s) 192, 406
BseXI GCAGC 1 cut(s) 273
BseYI CCCAGC 3 cut(s) 102, 293, 536
Bsh1236I CGCG 1 cut(s) 386
BshFI GGCC 1 cut(s) 71
BshNI GGYRCC 1 cut(s) 266
BsiHKAI GWGCWC 1 cut(s) 406
BsiSI CCGG 1 cut(s) 452
BslFI GGGAC 1 cut(s) 310
BslI CCNNNNNNNGG 1 cut(s) 102
BsmAI GTCTC 1 cut(s) 84
BsmFI GGGAC 1 cut(s) 310
BsnI GGCC 1 cut(s) 71
Bsp1286I GDGCHC 2 cut(s) 192, 406
Bsp143I GATC 2 cut(s) 365, 371
BspACI CCGC 5 cut(s) 264, 378, 381, 384, 413
BspANI GGCC 1 cut(s) 71
BspFNI CGCG 1 cut(s) 386
BspHI TCATGA 1 cut(s) 54
BspLI GGNNCC 2 cut(s) 16, 268
BspPI GGATC 2 cut(s) 373, 379
BspT107I GGYRCC 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 462
BsrI ACTGG 1 cut(s) 487
BssECI CCNNGG 1 cut(s) 438
BssMI GATC 2 cut(s) 365, 371
Bst4CI ACNGT 5 cut(s) 85, 196, 361, 428, 442
BstC8I GCNNGC 3 cut(s) 7, 390, 394
BstDSI CCRYGG 1 cut(s) 438
BstF5I GGATG 3 cut(s) 205, 342, 476
BstFNI CGCG 1 cut(s) 386
BstHHI GCGC 1 cut(s) 388
BstKTI GATC 2 cut(s) 368, 374
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 2 cut(s) 365, 371
BstMWI GCNNNNNNNGC 2 cut(s) 237, 389
BstSFI CTRYAG 1 cut(s) 108
BstSLI GKGCMC 2 cut(s) 192, 406
BstUI CGCG 1 cut(s) 386
BstV1I GCAGC 1 cut(s) 273
BstXI CCANNNNNNTGG 1 cut(s) 25
BsuRI GGCC 1 cut(s) 71
BtgI CCRYGG 1 cut(s) 438
BtsCI GGATG 3 cut(s) 205, 342, 476
BtsIMutI CAGTG 3 cut(s) 81, 201, 480
Cac8I GCNNGC 3 cut(s) 7, 390, 394
CciI TCATGA 1 cut(s) 54
CfoI GCGC 1 cut(s) 388
CviAII CATG 4 cut(s) 10, 49, 55, 343
DpnI GATC 2 cut(s) 367, 373
DpnII GATC 2 cut(s) 365, 371
DraIII CACNNNGTG 1 cut(s) 196
DriI GACNNNNNGTC 1 cut(s) 223
EaeI YGGCCR 1 cut(s) 69
Eam1105I GACNNNNNGTC 1 cut(s) 223
FaeI CATG 4 cut(s) 13, 52, 58, 346
FaiI YATR 8 cut(s) 11, 32, 50, 56, 180, 344, 518, 568
FaqI GGGAC 1 cut(s) 310
FatI CATG 4 cut(s) 9, 48, 54, 342
Fnu4HI GCNGC 4 cut(s) 262, 381, 384, 413
FokI GGATG 3 cut(s) 212, 349, 463
Fsp4HI GCNGC 4 cut(s) 262, 381, 384, 413
FspBI CTAG 6 cut(s) 135, 167, 252, 488, 495, 504
GlaI GCGC 1 cut(s) 387
GluI GCNGC 4 cut(s) 262, 381, 384, 413
GsaI CCCAGC 3 cut(s) 106, 297, 540
HaeIII GGCC 1 cut(s) 71
HapII CCGG 1 cut(s) 452
HhaI GCGC 1 cut(s) 388
Hin1II CATG 4 cut(s) 13, 52, 58, 346
Hin6I GCGC 1 cut(s) 386
HinP1I GCGC 1 cut(s) 386
HindIII AAGCTT 1 cut(s) 64
HinfI GANTC 1 cut(s) 298
HpaII CCGG 1 cut(s) 452
Hpy166II GTNNAC 2 cut(s) 404, 445
Hpy188III TCNNGA 3 cut(s) 55, 286, 369
Hpy8I GTNNAC 2 cut(s) 404, 445
HpyAV CCTTC 2 cut(s) 157, 426
HpyCH4III ACNGT 5 cut(s) 85, 196, 361, 428, 442
HpyCH4V TGCA 2 cut(s) 231, 404
HpyF10VI GCNNNNNNNGC 2 cut(s) 237, 389
Hsp92II CATG 4 cut(s) 13, 52, 58, 346
HspAI GCGC 1 cut(s) 386
Kzo9I GATC 2 cut(s) 365, 371
LmnI GCTCC 1 cut(s) 14
Lsp1109I GCAGC 1 cut(s) 273
LweI GCATC 1 cut(s) 48
MaeI CTAG 6 cut(s) 135, 167, 252, 488, 495, 504
MaeIII GTNAC 4 cut(s) 137, 215, 254, 355
MalI GATC 2 cut(s) 367, 373
MboI GATC 2 cut(s) 365, 371
MhlI GDGCHC 2 cut(s) 192, 406
MlsI TGGCCA 1 cut(s) 71
MluCI AATT 1 cut(s) 21
MluNI TGGCCA 1 cut(s) 71
MlyI GAGTC 1 cut(s) 292
MmeI TCCRAC 2 cut(s) 67, 343
MnlI CCTC 2 cut(s) 106, 291
Mox20I TGGCCA 1 cut(s) 71
MscI TGGCCA 1 cut(s) 71
MslI CAYNNNNRTG 2 cut(s) 53, 440
Msp20I TGGCCA 1 cut(s) 71
MspA1I CMGCKG 2 cut(s) 264, 392
MspI CCGG 1 cut(s) 452
MvnI CGCG 1 cut(s) 386
MwoI GCNNNNNNNGC 2 cut(s) 237, 389
NdeII GATC 2 cut(s) 365, 371
NlaIII CATG 4 cut(s) 13, 52, 58, 346
NlaIV GGNNCC 2 cut(s) 16, 268
NmuCI GTSAC 4 cut(s) 137, 215, 254, 355
OliI CACNNNNGTG 1 cut(s) 440
PagI TCATGA 1 cut(s) 54
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PkrI GCNGC 4 cut(s) 263, 382, 385, 414
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
PspFI CCCAGC 3 cut(s) 102, 293, 536
PspN4I GGNNCC 2 cut(s) 16, 268
PvuII CAGCTG 1 cut(s) 392
RseI CAYNNNNRTG 2 cut(s) 53, 440
SatI GCNGC 4 cut(s) 262, 381, 384, 413
Sau3AI GATC 2 cut(s) 365, 371
SchI GAGTC 1 cut(s) 292
SduI GDGCHC 2 cut(s) 192, 406
SetI ASST 8 cut(s) 68, 98, 115, 149, 168, 351, 394, 509
SfaNI GCATC 1 cut(s) 48
SfcI CTRYAG 1 cut(s) 108
SmiMI CAYNNNNRTG 2 cut(s) 53, 440
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
SpeI ACTAGT 3 cut(s) 134, 251, 494
Sse9I AATT 1 cut(s) 21
SsiI CCGC 5 cut(s) 264, 378, 381, 384, 413
SspMI CTAG 6 cut(s) 135, 167, 252, 488, 495, 504
TaaI ACNGT 5 cut(s) 85, 196, 361, 428, 442
TasI AATT 1 cut(s) 21
TauI GCSGC 3 cut(s) 383, 386, 415
TscAI CASTG 3 cut(s) 88, 201, 487
TseFI GTSAC 4 cut(s) 137, 215, 254, 355
TseI GCWGC 1 cut(s) 261
Tsp45I GTSAC 4 cut(s) 137, 215, 254, 355
TspDTI ATGAA 4 cut(s) 216, 298, 359, 555
TspRI CASTG 3 cut(s) 88, 201, 487
VneI GTGCAC 1 cut(s) 402
XspI CTAG 6 cut(s) 135, 167, 252, 488, 495, 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.