pycom15g33670

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0011789
Physical Location & Seq
Reverse (-)
33159675 .. 33160591
917 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g33670.2

Sequence Viewer

Length: 546 bp
ATGGCCAGAATTGGGGGTTTAGCCCTAGTTGTTGCCATGGTCATGGTGCCAAGCTGCTTAGCCACTGTCTACACCGTTGGAGACTCCTCTGGGTGGGCTAGTGGTGTGGATTATACCACTTGGACTAGTGGCAAGACCTTTAAAGTTGGTGACAGCCTAGTTTTCAACTATGGAAGTGGGCACACGGTGGATGAAGTGACTGCTAGTGACTACAAAACATGCACTTTGGGAAATTCAATTACGAGTGATAGCAGCGGAGCCACCACCATCACCCTCAAGACTGCCGGGACTCATAACTACATTTGCGCTACGATTGGGCATTGTGGTATGGGGATGAAGCTTTCTGTGACTGTAGGGTCAGGATCAACCGCAGCACCATCCAGTAATTCAGCATCCGGTGGTTCCGGCGGTAACTCTACAGTTACAACCCCTGCAAGTACCACATCCTCAACAACTGGTGTTGGGATTAGCCACTCTAGCTCTCTTGTTGTGGCTTTGTGGAGTGTCATTAGTTTGGTTGGTTTTTGTATGTTCCTTCTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

182

Amino Acids

18.04

Weight (kDa)

6.37

Isoelectric Point (pI)

22.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011789)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22480 AT1G72230
fragaria_vesca FvH4_5g36400
malus_domestica MD08G1189500.v1.1 MD15G1377000.v1.1
prunus_persica Prupe.1G523700_v2.0.a1
pyrus_communis pycom08g16280 pycom15g33670
rosa_chinensis RchiOBHm_Chr7g0238371
rosa_laevigata RLG00000000914
rosa_multiflora Rmu_sc0001371.1_g000024
rosa_roxburghii Rroxscaffold_3G00223070
rosa_rugosa Rorug07G0312300
rosa_samantha Rh7AG467100 Rh7BG437900 Rh7CG485200 Rh7DG453600
rosa_wichuraiana Rw7G038730 Rw7G038800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 355
AccB1I GGYRCC 1 cut(s) 46
AccI GTMKAC 1 cut(s) 69
AciI CCGC 3 cut(s) 255, 369, 408
AclWI GGATC 1 cut(s) 370
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 232
AdeI CACNNNGTG 1 cut(s) 187
AfaI GTAC 1 cut(s) 439
AfiI CCNNNNNNNGG 2 cut(s) 12, 93
AgsI TTSAA 2 cut(s) 166, 237
AhlI ACTAGT 1 cut(s) 125
AluBI AGCT 3 cut(s) 54, 340, 480
AluI AGCT 3 cut(s) 54, 340, 480
Alw26I GTCTC 1 cut(s) 75
AlwI GGATC 1 cut(s) 370
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 3 cut(s) 54, 252, 371
ApoI RAATTY 1 cut(s) 232
AspLEI GCGC 1 cut(s) 308
AsuC2I CCSGG 1 cut(s) 286
AsuHPI GGTGA 2 cut(s) 161, 262
BaeGI GKGCMC 1 cut(s) 183
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 46
BbvI GCAGC 3 cut(s) 41, 264, 383
BccI CCATC 2 cut(s) 275, 385
BcnI CCSGG 1 cut(s) 286
BcoDI GTCTC 1 cut(s) 75
BcuI ACTAGT 1 cut(s) 125
BfaI CTAG 6 cut(s) 26, 99, 126, 158, 204, 477
BfmI CTRYAG 2 cut(s) 351, 417
BisI GCNGC 3 cut(s) 55, 253, 372
BlpI GCTNAGC 1 cut(s) 58
BlsI GCNGC 3 cut(s) 56, 254, 373
Bme1390I CCNGG 1 cut(s) 286
BmiI GGNNCC 3 cut(s) 48, 259, 403
BmrFI CCNGG 1 cut(s) 286
BmsI GCATC 1 cut(s) 401
Bpu1102I GCTNAGC 1 cut(s) 58
BpuEI CTTGAG 1 cut(s) 260
BpuMI CCSGG 1 cut(s) 286
BsaJI CCNNGG 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 395
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 93
Bse1I ACTGG 2 cut(s) 381, 460
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 5 cut(s) 196, 339, 377, 392, 443
BseLI CCNNNNNNNGG 2 cut(s) 12, 93
BseNI ACTGG 2 cut(s) 381, 460
BseRI GAGGAG 1 cut(s) 76
BseSI GKGCMC 1 cut(s) 183
BseXI GCAGC 3 cut(s) 41, 264, 383
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 46
BsiSI CCGG 3 cut(s) 285, 396, 405
BslFI GGGAC 1 cut(s) 301
BslI CCNNNNNNNGG 2 cut(s) 12, 93
BsmAI GTCTC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 301
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 1 cut(s) 362
Bsp1720I GCTNAGC 1 cut(s) 58
Bsp19I CCATGG 1 cut(s) 36
BspACI CCGC 3 cut(s) 255, 369, 408
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 3 cut(s) 48, 259, 403
BspPI GGATC 1 cut(s) 370
BspT107I GGYRCC 1 cut(s) 46
BsrI ACTGG 2 cut(s) 381, 460
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 1 cut(s) 362
BssT1I CCWWGG 1 cut(s) 36
Bst4CI ACNGT 5 cut(s) 67, 76, 187, 352, 421
BstDEI CTNAG 1 cut(s) 58
BstDSI CCRYGG 1 cut(s) 36
BstF5I GGATG 5 cut(s) 196, 339, 377, 392, 443
BstHHI GCGC 1 cut(s) 308
BstKTI GATC 1 cut(s) 365
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 1 cut(s) 362
BstMWI GCNNNNNNNGC 1 cut(s) 477
BstNSI RCATGY 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 284
BstSFI CTRYAG 2 cut(s) 351, 417
BstSLI GKGCMC 1 cut(s) 183
BstV1I GCAGC 3 cut(s) 41, 264, 383
BstXI CCANNNNNNTGG 1 cut(s) 43
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 36
BtsCI GGATG 5 cut(s) 196, 339, 377, 392, 443
BtsIMutI CAGTG 1 cut(s) 63
CfoI GCGC 1 cut(s) 308
Csp6I GTAC 1 cut(s) 438
CviAII CATG 3 cut(s) 37, 43, 219
CviQI GTAC 1 cut(s) 438
DdeI CTNAG 1 cut(s) 58
DpnI GATC 1 cut(s) 364
DpnII GATC 1 cut(s) 362
DraI TTTAAA 1 cut(s) 142
DraIII CACNNNGTG 1 cut(s) 187
DrdI GACNNNNNNGTC 1 cut(s) 355
DseDI GACNNNNNNGTC 1 cut(s) 355
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 3 cut(s) 40, 46, 222
FaiI YATR 8 cut(s) 38, 44, 114, 171, 220, 294, 329, 530
FaqI GGGAC 1 cut(s) 301
FatI CATG 3 cut(s) 36, 42, 218
FblI GTMKAC 1 cut(s) 69
Fnu4HI GCNGC 3 cut(s) 55, 253, 372
FokI GGATG 5 cut(s) 203, 346, 364, 379, 430
Fsp4HI GCNGC 3 cut(s) 55, 253, 372
FspBI CTAG 6 cut(s) 26, 99, 126, 158, 204, 477
GlaI GCGC 1 cut(s) 307
GluI GCNGC 3 cut(s) 55, 253, 372
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 285, 396, 405
HhaI GCGC 1 cut(s) 308
Hin1II CATG 3 cut(s) 40, 46, 222
Hin6I GCGC 1 cut(s) 306
HinP1I GCGC 1 cut(s) 306
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 2 cut(s) 83, 289
HpaII CCGG 3 cut(s) 285, 396, 405
HphI GGTGA 2 cut(s) 161, 262
Hpy166II GTNNAC 1 cut(s) 70
Hpy188III TCNNGA 2 cut(s) 277, 360
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 1 cut(s) 545
HpyCH4III ACNGT 5 cut(s) 67, 76, 187, 352, 421
HpyCH4V TGCA 2 cut(s) 222, 434
HpyF10VI GCNNNNNNNGC 1 cut(s) 477
HpyF3I CTNAG 1 cut(s) 58
Hsp92II CATG 3 cut(s) 40, 46, 222
HspAI GCGC 1 cut(s) 306
Kzo9I GATC 1 cut(s) 362
LmnI GCTCC 1 cut(s) 257
LpnPI CCDG 9 cut(s) 19, 75, 298, 345, 394, 409, 418, 441, 444
Lsp1109I GCAGC 3 cut(s) 41, 264, 383
LweI GCATC 1 cut(s) 401
MaeI CTAG 6 cut(s) 26, 99, 126, 158, 204, 477
MaeIII GTNAC 6 cut(s) 149, 196, 206, 346, 410, 421
MalI GATC 1 cut(s) 364
MboI GATC 1 cut(s) 362
MhlI GDGCHC 1 cut(s) 183
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 9, 232, 237, 385
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 77, 283
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 3 cut(s) 97, 284, 457
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 141, 544
MslI CAYNNNNRTG 1 cut(s) 41
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 255
MspI CCGG 3 cut(s) 285, 396, 405
MspR9I CCNGG 1 cut(s) 286
MwoI GCNNNNNNNGC 1 cut(s) 477
NciI CCSGG 1 cut(s) 286
NcoI CCATGG 1 cut(s) 36
NdeII GATC 1 cut(s) 362
NlaIII CATG 3 cut(s) 40, 46, 222
NlaIV GGNNCC 3 cut(s) 48, 259, 403
NmuCI GTSAC 4 cut(s) 149, 196, 206, 346
NspI RCATGY 1 cut(s) 222
PkrI GCNGC 3 cut(s) 56, 254, 373
PleI GAGTC 2 cut(s) 77, 283
PpsI GAGTC 2 cut(s) 77, 283
PspN4I GGNNCC 3 cut(s) 48, 259, 403
RsaI GTAC 1 cut(s) 439
RsaNI GTAC 1 cut(s) 438
RseI CAYNNNNRTG 1 cut(s) 41
SaqAI TTAA 2 cut(s) 141, 544
SatI GCNGC 3 cut(s) 55, 253, 372
Sau3AI GATC 1 cut(s) 362
SchI GAGTC 2 cut(s) 77, 283
ScrFI CCNGG 1 cut(s) 286
SduI GDGCHC 1 cut(s) 183
SetI ASST 4 cut(s) 56, 140, 342, 482
SfaNI GCATC 1 cut(s) 401
SfcI CTRYAG 2 cut(s) 351, 417
SmiMI CAYNNNNRTG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
SpeI ACTAGT 1 cut(s) 125
Sse9I AATT 4 cut(s) 9, 232, 237, 385
SsiI CCGC 3 cut(s) 255, 369, 408
SspMI CTAG 6 cut(s) 26, 99, 126, 158, 204, 477
StyD4I CCNGG 1 cut(s) 284
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 5 cut(s) 67, 76, 187, 352, 421
TasI AATT 4 cut(s) 9, 232, 237, 385
Tru1I TTAA 2 cut(s) 141, 544
Tru9I TTAA 2 cut(s) 141, 544
TscAI CASTG 1 cut(s) 70
TseFI GTSAC 4 cut(s) 149, 196, 206, 346
TseI GCWGC 3 cut(s) 54, 252, 371
Tsp45I GTSAC 4 cut(s) 149, 196, 206, 346
TspDTI ATGAA 2 cut(s) 207, 350
TspRI CASTG 1 cut(s) 70
XapI RAATTY 1 cut(s) 232
XceI RCATGY 1 cut(s) 222
XmiI GTMKAC 1 cut(s) 69
XspI CTAG 6 cut(s) 26, 99, 126, 158, 204, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.