FvH4_5g36400

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011789
Physical Location & Seq
Forward (+)
26711818 .. 26713435
1618 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g36400.t1

Sequence Viewer

Length: 573 bp
ATGGCAGGCATGGGAGCCAGAATTGTGGGTATAGTCCTTGTTTTTGGCATGGTCATGATGCCAAGCTTGGCCAAAGACTACACTGTTGGAGACTCCTCTGGCTGGGCTACTGGTGTTGATTACACCACTTGGACGAGTGACAAGACCTTCGCAGTCGGCGATAACCTAGTGTTCAACTATGGAAGTGGGCACACGGTGGATGAAGTGAGTGGTACTGACTACAAGAGTTGCACCACAGGCAACTCAATCACTAGTGACAGCAGTGGCGCCACCACCATTCCTCTCAAGACTGCCGGGACACATAACTTCATTTGTGGCATTGTTGGGCATTGTGGAATGGGCATGAAGCTCTCTGTGACCGTTGGATCAGGATCAACCACCACCACACCAGCTGCCAAGGGTGCAACCACACCGCCTTCCACAGACGGTAGCAACACCACGGAAACCACTCCAGCAGTGACCACACCCACAACCACATCATCCACTGGTCTAGGAACTAGTCTCTCTAGCTCTCCTATTATGGCTTTGATGACTATTGCTGGGGTTGTTCTGAGTGTGTTGGTGCTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

191

Amino Acids

19.01

Weight (kDa)

5.03

Isoelectric Point (pI)

16.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 35 - 115 5e-23 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011789)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22480 AT1G72230
fragaria_vesca FvH4_5g36400
malus_domestica MD08G1189500.v1.1 MD15G1377000.v1.1
prunus_persica Prupe.1G523700_v2.0.a1
pyrus_communis pycom08g16280 pycom15g33670
rosa_chinensis RchiOBHm_Chr7g0238371
rosa_laevigata RLG00000000914
rosa_multiflora Rmu_sc0001371.1_g000024
rosa_roxburghii Rroxscaffold_3G00223070
rosa_rugosa Rorug07G0312300
rosa_samantha Rh7AG467100 Rh7BG437900 Rh7CG485200 Rh7DG453600
rosa_wichuraiana Rw7G038730 Rw7G038800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 266
AciI CCGC 1 cut(s) 413
AclWI GGATC 2 cut(s) 373, 379
AcoI YGGCCR 1 cut(s) 69
AcyI GRCGYC 1 cut(s) 267
AdeI CACNNNGTG 1 cut(s) 196
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 1 cut(s) 102
AgsI TTSAA 1 cut(s) 175
AhlI ACTAGT 2 cut(s) 251, 497
AluBI AGCT 4 cut(s) 66, 349, 392, 510
AluI AGCT 4 cut(s) 66, 349, 392, 510
Alw26I GTCTC 2 cut(s) 84, 506
AlwI GGATC 2 cut(s) 373, 379
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 392
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
AspLEI GCGC 1 cut(s) 269
AsuC2I CCSGG 1 cut(s) 295
BaeGI GKGCMC 1 cut(s) 192
BalI TGGCCA 1 cut(s) 71
BanI GGYRCC 1 cut(s) 266
BbvI GCAGC 1 cut(s) 379
BcnI CCSGG 1 cut(s) 295
BcoDI GTCTC 2 cut(s) 84, 506
BcuI ACTAGT 2 cut(s) 251, 497
BfaI CTAG 5 cut(s) 167, 252, 491, 498, 507
BfoI RGCGCY 1 cut(s) 270
BisI GCNGC 1 cut(s) 393
BlsI GCNGC 1 cut(s) 394
Bme1390I CCNGG 1 cut(s) 295
BmiI GGNNCC 2 cut(s) 16, 268
BmrFI CCNGG 1 cut(s) 295
BmsI GCATC 1 cut(s) 48
BpmI CTGGAG 1 cut(s) 435
BpuEI CTTGAG 1 cut(s) 269
BpuMI CCSGG 1 cut(s) 295
BsaBI GATNNNNATC 1 cut(s) 370
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 2 cut(s) 396, 438
Bsc4I CCNNNNNNNGG 1 cut(s) 102
Bse1I ACTGG 2 cut(s) 115, 490
Bse8I GATNNNNATC 1 cut(s) 370
BseDI CCNNGG 2 cut(s) 396, 438
BseGI GGATG 2 cut(s) 205, 479
BseJI GATNNNNATC 1 cut(s) 370
BseLI CCNNNNNNNGG 1 cut(s) 102
BseMII CTCAG 1 cut(s) 542
BseNI ACTGG 2 cut(s) 115, 490
BseRI GAGGAG 1 cut(s) 85
BseSI GKGCMC 1 cut(s) 192
BseXI GCAGC 1 cut(s) 379
BseYI CCCAGC 2 cut(s) 102, 539
BshFI GGCC 1 cut(s) 71
BshNI GGYRCC 1 cut(s) 266
BsiSI CCGG 1 cut(s) 294
BslFI GGGAC 1 cut(s) 310
BslI CCNNNNNNNGG 1 cut(s) 102
BsmAI GTCTC 2 cut(s) 84, 506
BsmFI GGGAC 1 cut(s) 310
BsnI GGCC 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 2 cut(s) 365, 371
BspACI CCGC 1 cut(s) 413
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 543
BspHI TCATGA 1 cut(s) 54
BspLI GGNNCC 2 cut(s) 16, 268
BspPI GGATC 2 cut(s) 373, 379
BspT107I GGYRCC 1 cut(s) 266
BsrI ACTGG 2 cut(s) 115, 490
BssECI CCNNGG 2 cut(s) 396, 438
BssMI GATC 2 cut(s) 365, 371
BssNI GRCGYC 1 cut(s) 267
BssT1I CCWWGG 1 cut(s) 396
Bst4CI ACNGT 4 cut(s) 85, 196, 361, 428
BstACI GRCGYC 1 cut(s) 267
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 551
BstDSI CCRYGG 1 cut(s) 438
BstF5I GGATG 2 cut(s) 205, 479
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 1 cut(s) 269
BstKTI GATC 2 cut(s) 368, 374
BstMAI GTCTC 2 cut(s) 84, 506
BstMBI GATC 2 cut(s) 365, 371
BstMWI GCNNNNNNNGC 2 cut(s) 237, 401
BstSCI CCNGG 1 cut(s) 293
BstSLI GKGCMC 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 379
BstXI CCANNNNNNTGG 1 cut(s) 25
BsuRI GGCC 1 cut(s) 71
BtgI CCRYGG 1 cut(s) 438
BtsCI GGATG 2 cut(s) 205, 479
BtsI GCAGTG 2 cut(s) 268, 462
BtsIMutI CAGTG 4 cut(s) 81, 268, 462, 483
Cac8I GCNNGC 1 cut(s) 7
CciI TCATGA 1 cut(s) 54
CfoI GCGC 1 cut(s) 269
Csp6I GTAC 1 cut(s) 213
CviAII CATG 4 cut(s) 10, 49, 55, 343
CviJI RGCY 9 cut(s) 17, 66, 71, 102, 107, 349, 392, 510, 524
CviKI_1 RGCY 9 cut(s) 17, 66, 71, 102, 107, 349, 392, 510, 524
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 1 cut(s) 551
DinI GGCGCC 1 cut(s) 268
DpnI GATC 2 cut(s) 367, 373
DpnII GATC 2 cut(s) 365, 371
DraIII CACNNNGTG 1 cut(s) 196
EaeI YGGCCR 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 396
EcoT14I CCWWGG 1 cut(s) 396
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 4 cut(s) 13, 52, 58, 346
FaiI YATR 9 cut(s) 11, 32, 50, 56, 180, 303, 344, 521, 571
FaqI GGGAC 1 cut(s) 310
FatI CATG 4 cut(s) 9, 48, 54, 342
Fnu4HI GCNGC 1 cut(s) 393
FokI GGATG 2 cut(s) 212, 466
Fsp4HI GCNGC 1 cut(s) 393
FspBI CTAG 5 cut(s) 167, 252, 491, 498, 507
GlaI GCGC 1 cut(s) 268
GluI GCNGC 1 cut(s) 393
GsaI CCCAGC 2 cut(s) 106, 543
GsuI CTGGAG 1 cut(s) 435
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 1 cut(s) 71
HapII CCGG 1 cut(s) 294
HhaI GCGC 1 cut(s) 269
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 4 cut(s) 13, 52, 58, 346
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HindIII AAGCTT 1 cut(s) 64
HinfI GANTC 1 cut(s) 92
HpaII CCGG 1 cut(s) 294
Hpy188I TCNGA 1 cut(s) 552
Hpy188III TCNNGA 3 cut(s) 55, 286, 369
HpyAV CCTTC 2 cut(s) 157, 426
HpyCH4III ACNGT 4 cut(s) 85, 196, 361, 428
HpyCH4V TGCA 2 cut(s) 231, 404
HpyF10VI GCNNNNNNNGC 2 cut(s) 237, 401
HpyF3I CTNAG 1 cut(s) 551
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 4 cut(s) 13, 52, 58, 346
HspAI GCGC 1 cut(s) 267
KasI GGCGCC 1 cut(s) 266
Kzo9I GATC 2 cut(s) 365, 371
LmnI GCTCC 1 cut(s) 14
Lsp1109I GCAGC 1 cut(s) 379
LweI GCATC 1 cut(s) 48
MaeI CTAG 5 cut(s) 167, 252, 491, 498, 507
MaeIII GTNAC 4 cut(s) 137, 254, 355, 457
MalI GATC 2 cut(s) 367, 373
MboI GATC 2 cut(s) 365, 371
MhlI GDGCHC 1 cut(s) 192
MlsI TGGCCA 1 cut(s) 71
MluCI AATT 1 cut(s) 21
MluNI TGGCCA 1 cut(s) 71
Mly113I GGCGCC 1 cut(s) 267
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 2 cut(s) 67, 343
MnlI CCTC 2 cut(s) 106, 291
Mox20I TGGCCA 1 cut(s) 71
MscI TGGCCA 1 cut(s) 71
MslI CAYNNNNRTG 1 cut(s) 53
Msp20I TGGCCA 1 cut(s) 71
MspA1I CMGCKG 1 cut(s) 392
MspI CCGG 1 cut(s) 294
MspR9I CCNGG 1 cut(s) 295
MwoI GCNNNNNNNGC 2 cut(s) 237, 401
NarI GGCGCC 1 cut(s) 267
NciI CCSGG 1 cut(s) 295
NdeII GATC 2 cut(s) 365, 371
NlaIII CATG 4 cut(s) 13, 52, 58, 346
NlaIV GGNNCC 2 cut(s) 16, 268
NmuCI GTSAC 4 cut(s) 137, 254, 355, 457
PagI TCATGA 1 cut(s) 54
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PkrI GCNGC 1 cut(s) 394
PleI GAGTC 1 cut(s) 86
PluTI GGCGCC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 86
PspFI CCCAGC 2 cut(s) 102, 539
PspN4I GGNNCC 2 cut(s) 16, 268
PvuII CAGCTG 1 cut(s) 392
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
RseI CAYNNNNRTG 1 cut(s) 53
SatI GCNGC 1 cut(s) 393
Sau3AI GATC 2 cut(s) 365, 371
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 295
SduI GDGCHC 1 cut(s) 192
SetI ASST 6 cut(s) 68, 149, 168, 351, 394, 512
SfaNI GCATC 1 cut(s) 48
SfoI GGCGCC 1 cut(s) 268
SmiMI CAYNNNNRTG 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
SpeI ACTAGT 2 cut(s) 251, 497
Sse9I AATT 1 cut(s) 21
SsiI CCGC 1 cut(s) 413
SspDI GGCGCC 1 cut(s) 266
SspMI CTAG 5 cut(s) 167, 252, 491, 498, 507
StyD4I CCNGG 1 cut(s) 293
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 4 cut(s) 85, 196, 361, 428
TasI AATT 1 cut(s) 21
TscAI CASTG 4 cut(s) 88, 268, 462, 490
TseFI GTSAC 4 cut(s) 137, 254, 355, 457
TseI GCWGC 1 cut(s) 392
Tsp45I GTSAC 4 cut(s) 137, 254, 355, 457
TspDTI ATGAA 4 cut(s) 216, 298, 359, 558
TspGWI ACGGA 1 cut(s) 455
TspRI CASTG 4 cut(s) 88, 268, 462, 490
XspI CTAG 5 cut(s) 167, 252, 491, 498, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.