AT1G72230

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011789
Physical Location & Seq
Forward (+)
27188036 .. 27189358
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G72230.1

Sequence Viewer

Length: 546 bp
ATGGCAAACTTGTGTACACTTGTTGGTTTTCTTGTCATCATCTTCTTCAATGTGTTTGCACCTGCCTCTTCTGCCAGTCACCCCGTCGAATGGTCGCTCGGGAAAGACTATAGCTCGTTGGCTACCGGAAAGTCCTTCGCGGTCGGCGATACCATCGTGTTCAACTACGGTGCGGGTCACACGGTGGACGAAGTGAGCGAAAGTGACTACAAGAGTTGCACATTGGGGAACGCAATTTCTTCGGACAGTAGTGGAACCACAAGTATAGCTCTCAAGACACCTGGTCCTCACTACTTCATCTGCGGTATCCCCGGCCACTGCACTGGCGGGATGAAGCTCTCTGTCATTGTTCCAGCAGCTTCATCAGGCGGCAGTACTGGAGACGGTACCACTGACAAAAATACACCCGTACAAGACGGAAAAACTACACCCTCAGAAGGTAAAAAGGCTAGTCCTTCTGCTTCGGCCACGGCCGTGTTGAAGCCGTTGGATGCTTTGGTTGTGACTTGTGTAGTTGCATTGATGTACACTTTGGCTCTCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

181

Amino Acids

18.37

Weight (kDa)

5.7

Isoelectric Point (pI)

30.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 31 - 111 8.6e-23 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011789)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22480 AT1G72230
fragaria_vesca FvH4_5g36400
malus_domestica MD08G1189500.v1.1 MD15G1377000.v1.1
prunus_persica Prupe.1G523700_v2.0.a1
pyrus_communis pycom08g16280 pycom15g33670
rosa_chinensis RchiOBHm_Chr7g0238371
rosa_laevigata RLG00000000914
rosa_multiflora Rmu_sc0001371.1_g000024
rosa_roxburghii Rroxscaffold_3G00223070
rosa_rugosa Rorug07G0312300
rosa_samantha Rh7AG467100 Rh7BG437900 Rh7CG485200 Rh7DG453600
rosa_wichuraiana Rw7G038730 Rw7G038800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 70
Acc36I ACCTGC 1 cut(s) 70
Acc65I GGTACC 1 cut(s) 386
AccB1I GGYRCC 1 cut(s) 386
AccII CGCG 1 cut(s) 140
AciI CCGC 5 cut(s) 140, 173, 303, 327, 369
AcoI YGGCCR 3 cut(s) 313, 465, 471
AdeI CACNNNGTG 1 cut(s) 184
AfaI GTAC 5 cut(s) 16, 376, 388, 411, 527
AfiI CCNNNNNNNGG 2 cut(s) 90, 437
AgsI TTSAA 3 cut(s) 49, 163, 481
AhdI GACNNNNNGTC 1 cut(s) 282
AjnI CCWGG 1 cut(s) 280
AleI CACNNNNGTG 1 cut(s) 473
AluBI AGCT 4 cut(s) 114, 269, 337, 359
AluI AGCT 4 cut(s) 114, 269, 337, 359
Alw26I GTCTC 1 cut(s) 375
Ama87I CYCGRG 1 cut(s) 98
AoxI GGCC 3 cut(s) 313, 465, 471
ApeKI GCWGC 1 cut(s) 356
Asp718I GGTACC 1 cut(s) 386
AspS9I GGNCC 1 cut(s) 284
AsuC2I CCSGG 1 cut(s) 312
AsuHPI GGTGA 1 cut(s) 71
AvaI CYCGRG 1 cut(s) 98
AvaII GGWCC 1 cut(s) 284
BaeI ACNNNNGTAYC 2 cut(s) 141, 174
BanI GGYRCC 1 cut(s) 386
BbvI GCAGC 1 cut(s) 368
BccI CCATC 1 cut(s) 161
BceAI ACGGC 3 cut(s) 458, 469, 486
BcgI CGANNNNNNTGC 2 cut(s) 222, 256
BciT130I CCWGG 1 cut(s) 282
BciVI GTATCC 1 cut(s) 317
BcnI CCSGG 1 cut(s) 312
BcoDI GTCTC 1 cut(s) 375
BfaI CTAG 1 cut(s) 450
BfmI CTRYAG 1 cut(s) 109
BfuAI ACCTGC 1 cut(s) 70
BfuI GTATCC 1 cut(s) 317
BisI GCNGC 2 cut(s) 357, 370
BlsI GCNGC 2 cut(s) 358, 371
BmcAI AGTACT 1 cut(s) 376
Bme1390I CCNGG 2 cut(s) 282, 312
Bme18I GGWCC 1 cut(s) 284
BmeRI GACNNNNNGTC 1 cut(s) 282
BmeT110I CYCGRG 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 2 cut(s) 256, 388
BmrFI CCNGG 2 cut(s) 282, 312
BmsI GCATC 1 cut(s) 481
BpmI CTGGAG 1 cut(s) 399
BpuEI CTTGAG 1 cut(s) 257
BpuMI CCSGG 1 cut(s) 312
BsaJI CCNNGG 2 cut(s) 310, 468
BsaWI WCCGGW 1 cut(s) 125
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 437
Bse1I ACTGG 3 cut(s) 75, 328, 382
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 310, 468
BseGI GGATG 2 cut(s) 336, 496
BseLI CCNNNNNNNGG 2 cut(s) 90, 437
BseMII CTCAG 1 cut(s) 447
BseNI ACTGG 3 cut(s) 75, 328, 382
BseX3I CGGCCG 1 cut(s) 471
BseXI GCAGC 1 cut(s) 368
BsgI GTGCAG 1 cut(s) 304
Bsh1236I CGCG 1 cut(s) 140
Bsh1285I CGRYCG 2 cut(s) 144, 474
BshFI GGCC 3 cut(s) 315, 467, 473
BshNI GGYRCC 1 cut(s) 386
BsiEI CGRYCG 2 cut(s) 144, 474
BsiHKCI CYCGRG 1 cut(s) 98
BsiSI CCGG 2 cut(s) 126, 312
BslI CCNNNNNNNGG 2 cut(s) 90, 437
BsmAI GTCTC 1 cut(s) 375
BsmBI CGTCTC 1 cut(s) 375
BsnI GGCC 3 cut(s) 315, 467, 473
BsoBI CYCGRG 1 cut(s) 98
Bsp1407I TGTACA 2 cut(s) 14, 525
BspACI CCGC 5 cut(s) 140, 173, 303, 327, 369
BspANI GGCC 3 cut(s) 315, 467, 473
BspCNI CTCAG 1 cut(s) 446
BspFNI CGCG 1 cut(s) 140
BspLI GGNNCC 2 cut(s) 256, 388
BspMI ACCTGC 1 cut(s) 70
BspT107I GGYRCC 1 cut(s) 386
BsrGI TGTACA 2 cut(s) 14, 525
BsrI ACTGG 3 cut(s) 75, 328, 382
BssECI CCNNGG 2 cut(s) 310, 468
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 4 cut(s) 170, 184, 248, 386
Bst6I CTCTTC 1 cut(s) 73
BstAUI TGTACA 2 cut(s) 14, 525
BstDEI CTNAG 1 cut(s) 433
BstDSI CCRYGG 1 cut(s) 468
BstF5I GGATG 2 cut(s) 336, 496
BstFNI CGCG 1 cut(s) 140
BstMAI GTCTC 1 cut(s) 375
BstMCI CGRYCG 2 cut(s) 144, 474
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 2 cut(s) 280, 310
BstSFI CTRYAG 1 cut(s) 109
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 1 cut(s) 368
BstXI CCANNNNNNTGG 1 cut(s) 323
BstZI CGGCCG 1 cut(s) 471
BsuI GTATCC 1 cut(s) 317
BsuRI GGCC 3 cut(s) 315, 467, 473
BtgI CCRYGG 1 cut(s) 468
BtsCI GGATG 2 cut(s) 336, 496
BtsI GCAGTG 1 cut(s) 316
BtsIMutI CAGTG 3 cut(s) 316, 321, 390
BveI ACCTGC 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 284
CsiI ACCWGGT 1 cut(s) 280
Csp6I GTAC 5 cut(s) 15, 375, 387, 410, 526
CviQI GTAC 5 cut(s) 15, 375, 387, 410, 526
DdeI CTNAG 1 cut(s) 433
DraIII CACNNNGTG 1 cut(s) 184
DriI GACNNNNNGTC 1 cut(s) 282
EaeI YGGCCR 3 cut(s) 313, 465, 471
EagI CGGCCG 1 cut(s) 471
Eam1104I CTCTTC 1 cut(s) 73
Eam1105I GACNNNNNGTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 73
EclXI CGGCCG 1 cut(s) 471
Eco47I GGWCC 1 cut(s) 284
Eco52I CGGCCG 1 cut(s) 471
Eco88I CYCGRG 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 280
Esp3I CGTCTC 1 cut(s) 375
FaiI YATR 2 cut(s) 111, 266
FauI CCCGC 2 cut(s) 166, 320
Fnu4HI GCNGC 2 cut(s) 357, 370
FokI GGATG 2 cut(s) 343, 503
Fsp4HI GCNGC 2 cut(s) 357, 370
FspBI CTAG 1 cut(s) 450
GluI GCNGC 2 cut(s) 357, 370
GsuI CTGGAG 1 cut(s) 399
HaeIII GGCC 3 cut(s) 315, 467, 473
HapII CCGG 2 cut(s) 126, 312
HpaII CCGG 2 cut(s) 126, 312
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 4 cut(s) 15, 17, 187, 528
Hpy188I TCNGA 2 cut(s) 244, 436
Hpy188III TCNNGA 2 cut(s) 100, 274
Hpy8I GTNNAC 4 cut(s) 15, 17, 187, 528
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 3 cut(s) 145, 431, 465
HpyCH4III ACNGT 4 cut(s) 170, 184, 248, 386
HpyCH4V TGCA 4 cut(s) 59, 219, 321, 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 433
KpnI GGTACC 1 cut(s) 390
Lsp1109I GCAGC 1 cut(s) 368
LweI GCATC 1 cut(s) 481
MabI ACCWGGT 1 cut(s) 280
MaeI CTAG 1 cut(s) 450
MaeIII GTNAC 4 cut(s) 77, 176, 203, 502
MboII GAAGA 4 cut(s) 34, 37, 60, 231
MluCI AATT 1 cut(s) 234
MmeI TCCRAC 1 cut(s) 468
MnlI CCTC 3 cut(s) 76, 297, 442
MseI TTAA 1 cut(s) 544
MslI CAYNNNNRTG 1 cut(s) 473
MspI CCGG 2 cut(s) 126, 312
MspR9I CCNGG 2 cut(s) 282, 312
MvaI CCWGG 1 cut(s) 282
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 71
NciI CCSGG 1 cut(s) 312
NlaIV GGNNCC 2 cut(s) 256, 388
NmuCI GTSAC 4 cut(s) 77, 176, 203, 502
OliI CACNNNNGTG 1 cut(s) 473
PaqCI CACCTGC 1 cut(s) 70
PcsI WCGNNNNNNNCGW 2 cut(s) 144, 195
PkrI GCNGC 2 cut(s) 358, 371
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 2 cut(s) 256, 388
PspPI GGNCC 1 cut(s) 284
RsaI GTAC 5 cut(s) 16, 376, 388, 411, 527
RsaNI GTAC 5 cut(s) 15, 375, 387, 410, 526
RseI CAYNNNNRTG 1 cut(s) 473
SaqAI TTAA 1 cut(s) 544
SatI GCNGC 2 cut(s) 357, 370
Sau96I GGNCC 1 cut(s) 284
ScaI AGTACT 1 cut(s) 376
ScrFI CCNGG 2 cut(s) 282, 312
SetI ASST 7 cut(s) 64, 116, 271, 283, 339, 361, 442
SexAI ACCWGGT 1 cut(s) 280
SfaNI GCATC 1 cut(s) 481
SfcI CTRYAG 1 cut(s) 109
SinI GGWCC 1 cut(s) 284
SmiMI CAYNNNNRTG 1 cut(s) 473
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 1 cut(s) 234
SsiI CCGC 5 cut(s) 140, 173, 303, 327, 369
SspMI CTAG 1 cut(s) 450
StyD4I CCNGG 2 cut(s) 280, 310
TaaI ACNGT 4 cut(s) 170, 184, 248, 386
TaqI TCGA 1 cut(s) 87
TasI AATT 1 cut(s) 234
TatI WGTACW 3 cut(s) 14, 374, 525
TauI GCSGC 1 cut(s) 372
Tru1I TTAA 1 cut(s) 544
Tru9I TTAA 1 cut(s) 544
TscAI CASTG 3 cut(s) 323, 328, 397
TseFI GTSAC 4 cut(s) 77, 176, 203, 502
TseI GCWGC 1 cut(s) 356
Tsp45I GTSAC 4 cut(s) 77, 176, 203, 502
TspDTI ATGAA 3 cut(s) 286, 347, 351
TspGWI ACGGA 1 cut(s) 432
TspRI CASTG 3 cut(s) 323, 328, 397
VpaK11BI GGWCC 1 cut(s) 284
XspI CTAG 1 cut(s) 450
ZrmI AGTACT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.