Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004821

Physical Location & Seq

Genomic Coordinates Reverse (-)

31325261 .. 31330390

Gene Structure 5130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0312300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3576 bp

ATGGGCCATTGCTGCATGAATCACACCGAGACTCCTCTCTCTTCCATTTTTGCTCAATCCAACCTCTCCTATCTCTCCACGCAACCAAACCCCTTCCGCTTCTTCCTCTTCTCCAAGACCCACCGAAACGCCGCCGTTCCCTCTCTCAGACTCCGCTCATGGCCCACTTCCACGCCGCCGAGCCTCCGAGTAGCCACCTCGGTTCGGAGCGCCTCCAAAGAAGAAGCAGCGCCGCCCAAGCAGCAGCAGCGGCGGCAGGTGGGGAAAAGGACCGACCTGAAGAAGATTCTGATACTGGGCGCCGGCCCCATTGTGATCGGGCAAGCCTGCGAGTTCGATTACTCGGGGACTCAAGCTTGTAAGGCTCTGAAAGAAGAAGGATACGACGTCGTTTTGATCAATTCCAACCCGGCCACCATCATGACCGACCCCGATTTGGCGGACCGGACTTACATTACGCCGATGACGCCGGAGCTGGTGGAGCAAGTCCTCGAAAAGGAGCGCCCCGACGCTCTCCTCCCCACCATGGGAGGCCAGACGGCGTTGAACCTCGCCGTTGCGTTAGCCGAGAGCGGTGCGCTTGAAAAGTATGGGGTGGAGTTGATCGGGGCTAAGCTGGAGGCTATAAAGAAAGCAGAGGATAGGGATTTGTTCAAGCAGGCCATGAACAACATTGGGATCAAAACGCCGCCGTCTGGAATTGCCAACACTTATGAGGAATGCGTCGAAATCGCGAATGAGATTGGTGAGTTTCCCTTGATCATTAGGCCGGCTTTTACTCTAGGAGGGACGGGAGGTGGAATTGCTTATAATAAGGAGGAGTTTGAGACAATCTGTAAGTCGGGGCTGGCGGCGAGCTTGACTTGTCAGATTTTGGTGGAGAAGTCATTGTTGGGGTGGAAGGAGTATGAGCTTGAGGTCATGAGGGACTTGGCAGACAATGTGGTTATTATTTGCTCCATTGAGAATATTGACCCAATGGGGGTTCATACTGGGGATTCTATCACCGTGGCGCCTGCGCAGACTTTGACTGATAAGGAGTATCAGCGGCTAAGAGACTATTCCATTGCTATAATAAGGGAGATTGGAGTGGAATGTGGTGGCTCTAATGTGCAGTTTGCGGTGAACCCCAAAGATGGGGAGGTTATGGTGATTGAGATGAATCCTAGGGTGTCGCGGTCCTCCGCTCTCGCATCCAAAGCTACTGGATTTCCCATAGCGAAAATGGCTGCCAAGTTGTCAGTTGGGTATTCCTTGGATCAAATTCCCAATGACATTACAAAGAAGACACCGGCTAGTTTTGAACCTTCCATAGACTATGTGGTAACAAAGATTCCCAGGTTTGCTTTTGAGAAATTTCCTGGTTCACAGCCAATATTGACGACCCAGATGAAATCTGTTGGTGAGTCAATGGCTCTGGGTCGTACATTTCAAGAGTCCTTTCAGAAGGCAGTTCGATCTTTGGAATGTGGTTTCTCTGGATGGGGCTGTGGCAAAATTAAGGAACTGGACTGGGGTTGGGACAAGTTGAAATATAGCCTCCGAGTCCCTAACCCAGATCGAATCCATGCCGTATATGCTGCAATGAAGAAGGGGATGAAGGTAGATGAAATTCATGAGCTGAGTTTCATTGACAAATGGTTCCTCACACAGCTCAAGGAGTTGGTAGATGTAGAGCAATTCCTCCTGGCTAGAAACTTGTCTGATCTAACAAAGGATGAGTTCTACGAAGTGAAGAAAAGAGGCTTCAGTGACAAACAGATAGCTTTTGCCACTAAATCTTCTGAAAATGAAGTGCGGTTGAAGAGACTATTGTTAGGTGTTACTCCAGCATATAAGCGGGTAGATACATGCGCTGCAGAGTTTGAGGCCAATACTCCTTATATGTACTCTTCCTATGACTTTGAGTGTGAATCAGCTCCGACCCAAAAAAAGAAGGTTTTGATTTTAGGTGGAGGACCAAATCGAATTGGTCAGGGTATTGAATTTGACTACTGCTGTTGCCATACATCCTTTGCCCTTCAGAAAGCAGGATATGAAACAATTATGATGAATTCAAATCCTGAAACAGTATCTACTGATTATGACACGAGCGACCGTCTATATTTTGAGCCACTGACTGTTGAAGATGTGCTGAACATAATTGATTTGGAAAGACCTGATGGGATCATTGTGCAGTTCGGAGGACAAACACCTCTGAAGCTGGCACTTCCCCTCCAGCAGTATTTAGACGAAAACAAGCCGAGATGTGCAAGTGGGATTGGACATGTACGCATTTGGGGTACAACACCTGACTCAATAGATGCTGCTGAGGACAGGGAGAAGTTCAATGCAATCCTTAATGAGTTAAAGATTGAACAACCAAAAGGAGGAATTGCAAAGAGCGAAGCAGATGCTCTTGCAATTGCAACAGCCATTGGCTACCCCGTTGTTGTCCGACCTTCCTATGTATTAGGTGGCCGTGCCATGGAGATAGTCTATAGTGATGAAAAACTTGTGACCTACCTTGAAACTGCTGTTGAGGTGGACCCAGAACGCCCTGTATTGATTGACAGGTATCTGTCAGATGCCATTGAGATTGATGTTGATGCACTTGCTGACTCTCATGGGAATGTTGTCATTGGTGGGATAATGGAGCACATTGAGCAGGCTGGGGTCCATTCTGGTGACTCTGCTTGCTCAATTCCAACAAAAACCATCCCAGCTTCTTGCTTGAATACAATCAGGTCATGGACTATAAAATTGGCCAAGAGGCTGAATGTGTGCGGGCTGATGAACTGTCAGTATGCAATTACAATGTCTGGTGATGTTTATTTACTTGAGGCAAATCCTCGTGCTTCCCGTACAGTCCCATTTGTGTCCAAGGCAATTGGACATCCATTGGCTAAATATGCTTCCCTGGTTATGTCTGGGAAGTCTCTTCATGACCTTAATTTCACAAAAGAAGTCATTCCTGCACATGTGTCAGTAAAGGAAGCTGTTCTTCCATTTGAGAAGTTCCAAGGTTGTGATGTACTGCTTGGGCCTGAGATGCGTAGCACTGGTGAGGTGATGGGTATTGATTTTGAGTTTCCCATTGCATTTGCCAAGGCGCAGATTGCTGCTGGACAGAAGCCACCACTTTCTGGCACTGTGTTCTTGAGCTTAAATGACTTAACCAAACCTCATCTTGAAAGGATTGCAACCGCATTTTTAGGCCTTGGATTTAAGATTGTTTCAACTTCAGGGACAGCTCATTTTCTTGAATTAGCGAAAATTCCCGTGGAACAAGTGCTGAAGCTGCATGAGGGGCGACCTAATGCTGGTGACATGGTTGCAAATGGACAAATCCAGTTGATGGTGATCACAAGTTCTGGGGATGCACATGATCAAATTGATGGACGGCAGCTAAGGAGGATGGCTCTTGCTTACAAGATTCCAGTAATTACCACAGTTGCCGGAGCATTGGCCACTGCAGAAGCAATAAAGAGTCTAAAGTCCAGCTCCATTAAAATGATTGCTCTTCAGGACTTTTTTGATGATGAGAACAAAGCTCTCGGTAATAAGAAGTTGCAGTCAGCCTCGTCCTATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006465 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010467 GO:0016020 GO:0016485 GO:0016787 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0055035 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 map02024 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

1191

Amino Acids

130.5

Weight (kDa)

5.68

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPSase_L_D1	PF25596	93 - 210	1e-48	Carbamoyl phosphate synthase preATP-grasp domain
CPSase_L_D2	PF02786	214 - 421	1.5e-71	Carbamoyl-phosphate synthase L chain, ATP binding domain
CPSase_L_D3	PF02787	513 - 591	4.6e-27	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CPSase_L_D1	PF25596	643 - 768	8e-46	Carbamoyl phosphate synthase preATP-grasp domain
CPSase_L_D2	PF02786	772 - 975	1.3e-37	Carbamoyl-phosphate synthase L chain, ATP binding domain
ATP-grasp	PF02222	780 - 946	8.9e-06	ATP-grasp domain
Dala_Dala_lig_C	PF07478	799 - 944	5e-07	D-ala D-ala ligase C-terminus
MGS	PF02142	1058 - 1143	4e-20	MGS-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09040 AT4G09040
fragaria_vesca	FvH4_5g36390 FvH4_5g36390
malus_domestica	MD08G1189600.v1.1 MD08G1189900.v1.1 MD15G1377200.v1.1
prunus_persica	Prupe.1G523800_v2.0.a1 Prupe.1G523800_v2.0.a1
pyrus_communis	pycom08g16310 pycom15g33680 pycom15g33730
rosa_chinensis	RchiOBHm_Chr7g0238361
rosa_laevigata	RLG00000000915 RLG00000000916 RLG00000000917
rosa_multiflora	Rmu_sc0001371.1_g000023
rosa_roxburghii	Rroxscaffold_3G00223080
rosa_rugosa	Rorug07G0311900 Rorug07G0312300
rosa_samantha	Rh7AG467000 Rh7BG437800 Rh7CG484700 Rh7CG485000 Rh7CG485100 Rh7DG453100 Rh7DG453400 Rh7DG453500
rosa_wichuraiana	Rw7G038680 Rw7G038720 Rw7G038790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	810
AarI	CACCTGC	1 cut(s)	247
AatII	GACGTC	1 cut(s)	390
Acc16I	TGCGCA	1 cut(s)	1020
Acc36I	ACCTGC	1 cut(s)	247
AccB1I	GGYRCC	2 cut(s)	299, 1012
AccB7I	CCANNNNNTGG	2 cut(s)	3125, 3337
AccBSI	CCGCTC	3 cut(s)	156, 573, 1187
AccII	CGCG	2 cut(s)	734, 1177
AclWI	GGATC	3 cut(s)	686, 1266, 2174
AcoI	YGGCCR	4 cut(s)	411, 2458, 2745, 3447
AcsI	RAATTY	6 cut(s)	1263, 1355, 1611, 1985, 2053, 3255
AcuI	CTGAAG	7 cut(s)	299, 1732, 2006, 2219, 3207, 3296, 3488
AcyI	GRCGYC	4 cut(s)	300, 387, 467, 1013
AfaI	GTAC	6 cut(s)	1426, 1889, 2271, 2284, 2845, 3015
AflIII	ACRYGT	2 cut(s)	2266, 2959
AjnI	CCWGG	4 cut(s)	1337, 1360, 1686, 2898
AjuI	GAANNNNNNNTTGG	2 cut(s)	875, 907
Alw21I	GWGCWC	1 cut(s)	2640
Alw26I	GTCTC	5 cut(s)	23, 821, 1050, 1801, 2922
AlwI	GGATC	3 cut(s)	686, 1266, 2174
Ama87I	CYCGRG	1 cut(s)	343
ApoI	RAATTY	6 cut(s)	1263, 1355, 1611, 1985, 2053, 3255
Asp700I	GAANNNNTTC	2 cut(s)	2949, 2979
AspA2I	CCTAGG	1 cut(s)	1166
AspLEI	GCGC	9 cut(s)	212, 232, 302, 504, 580, 1015, 1021, 1856, 3094
AsuC2I	CCSGG	1 cut(s)	410
AvaI	CYCGRG	1 cut(s)	343
AvaII	GGWCC	6 cut(s)	270, 442, 1179, 1958, 2527, 2656
AvrII	CCTAGG	1 cut(s)	1166
BalI	TGGCCA	2 cut(s)	2747, 3449
BanI	GGYRCC	2 cut(s)	299, 1012
BauI	CACGAG	2 cut(s)	2089, 2832
BbsI	GAAGAC	1 cut(s)	1292
Bbv12I	GWGCWC	1 cut(s)	2640
BbvCI	CCTCAGC	1 cut(s)	2310
BccI	CCATC	9 cut(s)	425, 1130, 1476, 2156, 2705, 3046, 3331, 3371, 3391
BceAI	ACGGC	7 cut(s)	119, 539, 555, 676, 1556, 2445, 3398
BcgI	CGANNNNNNTGC	4 cut(s)	557, 591, 2375, 2409
BciT130I	CCWGG	4 cut(s)	1339, 1362, 1688, 2900
BciVI	GTATCC	1 cut(s)	374
BclI	TGATCA	4 cut(s)	396, 759, 3342, 3367
BcnI	CCSGG	1 cut(s)	410
BcoDI	GTCTC	5 cut(s)	23, 821, 1050, 1801, 2922
BfaI	CTAG	4 cut(s)	782, 1167, 1296, 1692
BfmI	CTRYAG	3 cut(s)	1857, 2479, 3453
BfoI	RGCGCY	5 cut(s)	213, 233, 303, 505, 1016
BfuAI	ACCTGC	1 cut(s)	247
BfuI	GTATCC	1 cut(s)	374
BlnI	CCTAGG	1 cut(s)	1166
BlpI	GCTNAGC	1 cut(s)	612
Bme1390I	CCNGG	5 cut(s)	410, 1339, 1362, 1688, 2900
Bme18I	GGWCC	6 cut(s)	270, 442, 1179, 1958, 2527, 2656
BmeT110I	CYCGRG	1 cut(s)	343
BmiI	GGNNCC	6 cut(s)	301, 307, 1014, 1643, 2529, 2657
BmrFI	CCNGG	5 cut(s)	410, 1339, 1362, 1688, 2900
BmrI	ACTGGG	3 cut(s)	305, 1002, 1522
BmsI	GCATC	7 cut(s)	1202, 2293, 2383, 2557, 2578, 3021, 3349
BmuI	ACTGGG	3 cut(s)	305, 1002, 1522
BpiI	GAAGAC	1 cut(s)	1292
BplI	GAGNNNNNCTC	2 cut(s)	3385, 3417
BpmI	CTGGAG	3 cut(s)	638, 1812, 2201
Bpu10I	CCTNAGC	2 cut(s)	2310, 3389
Bpu1102I	GCTNAGC	1 cut(s)	612
BpuEI	CTTGAG	5 cut(s)	336, 935, 1640, 2840, 3160
BpuMI	CCSGG	1 cut(s)	410
BsaBI	GATNNNNATC	1 cut(s)	3341
BsaHI	GRCGYC	4 cut(s)	300, 387, 467, 1013
BsaWI	WCCGGW	1 cut(s)	444
BsaXI	ACNNNNNCTCC	4 cut(s)	16, 46, 2199, 2229
Bse118I	RCCGGY	3 cut(s)	302, 769, 1291
Bse1I	ACTGG	8 cut(s)	300, 997, 1210, 1512, 1517, 3046, 3331, 3419
Bse3DI	GCAATG	4 cut(s)	7, 1065, 1590, 3075
Bse8I	GATNNNNATC	1 cut(s)	3341
BseBI	CCWGG	4 cut(s)	1339, 1362, 1688, 2900
BseGI	GGATG	9 cut(s)	1193, 1487, 1602, 1723, 2009, 2697, 2875, 3364, 3402
BseJI	GATNNNNATC	1 cut(s)	3341
BseMI	GCAATG	4 cut(s)	7, 1065, 1590, 3075
BseMII	CTCAG	4 cut(s)	160, 1613, 2301, 3018
BseNI	ACTGG	8 cut(s)	300, 997, 1210, 1512, 1517, 3046, 3331, 3419
BseRI	GAGGAG	3 cut(s)	24, 506, 833
BseYI	CCCAGC	2 cut(s)	2651, 2701
BsgI	GTGCAG	3 cut(s)	1133, 2195, 2940
Bsh1236I	CGCG	2 cut(s)	734, 1177
Bsh1285I	CGRYCG	1 cut(s)	2098
BshNI	GGYRCC	2 cut(s)	299, 1012
BsiEI	CGRYCG	1 cut(s)	2098
BsiHKAI	GWGCWC	1 cut(s)	2640
BsiHKCI	CYCGRG	1 cut(s)	343
BsiSI	CCGG	7 cut(s)	303, 410, 445, 470, 770, 1292, 3438
BslFI	GGGAC	7 cut(s)	361, 802, 941, 1532, 1535, 2834, 3241
BsmAI	GTCTC	5 cut(s)	23, 821, 1050, 1801, 2922
BsmFI	GGGAC	7 cut(s)	361, 802, 941, 1532, 1535, 2834, 3241
BsmI	GAATGC	1 cut(s)	725
BsoBI	CYCGRG	1 cut(s)	343
Bsp1286I	GDGCHC	1 cut(s)	2640
Bsp1720I	GCTNAGC	1 cut(s)	612
Bsp19I	CCATGG	2 cut(s)	525, 2466
Bsp68I	TCGCGA	1 cut(s)	734
BspCNI	CTCAG	4 cut(s)	159, 1614, 2302, 3019
BspFNI	CGCG	2 cut(s)	734, 1177
BspHI	TCATGA	4 cut(s)	420, 921, 1615, 2923
BspLI	GGNNCC	6 cut(s)	301, 307, 1014, 1643, 2529, 2657
BspMAI	CTGCAG	2 cut(s)	1861, 3457
BspMI	ACCTGC	1 cut(s)	247
BspPI	GGATC	3 cut(s)	686, 1266, 2174
BspQI	GCTCTTC	1 cut(s)	3507
BspT107I	GGYRCC	2 cut(s)	299, 1012
BsrBI	CCGCTC	3 cut(s)	156, 573, 1187
BsrDI	GCAATG	4 cut(s)	7, 1065, 1590, 3075
BsrFI	RCCGGY	3 cut(s)	302, 769, 1291
BsrI	ACTGG	8 cut(s)	300, 997, 1210, 1512, 1517, 3046, 3331, 3419
BssAI	RCCGGY	3 cut(s)	302, 769, 1291
BssNI	GRCGYC	4 cut(s)	300, 387, 467, 1013
BssSI	CACGAG	2 cut(s)	2089, 2832
BssT1I	CCWWGG	8 cut(s)	525, 1166, 1254, 2466, 2862, 3001, 3087, 3199
Bst2BI	CACGAG	2 cut(s)	2089, 2832
Bst2UI	CCWGG	4 cut(s)	1339, 1362, 1688, 2900
Bst4CI	ACNGT	8 cut(s)	1009, 2071, 2099, 2122, 2780, 2848, 3133, 3433
Bst6I	CTCTTC	6 cut(s)	46, 113, 1799, 1897, 2925, 3507
BstACI	GRCGYC	4 cut(s)	300, 387, 467, 1013
BstDEI	CTNAG	7 cut(s)	146, 612, 1052, 1622, 2310, 3027, 3389
BstDSI	CCRYGG	4 cut(s)	525, 1008, 2466, 3261
BstENI	CCTNNNNNAGG	1 cut(s)	494
BstF5I	GGATG	9 cut(s)	1193, 1487, 1602, 1723, 2009, 2697, 2875, 3364, 3402
BstFNI	CGCG	2 cut(s)	734, 1177
BstH2I	RGCGCY	5 cut(s)	213, 233, 303, 505, 1016
BstHHI	GCGC	9 cut(s)	212, 232, 302, 504, 580, 1015, 1021, 1856, 3094
BstMAI	GTCTC	5 cut(s)	23, 821, 1050, 1801, 2922
BstMCI	CGRYCG	1 cut(s)	2098
BstNI	CCWGG	4 cut(s)	1339, 1362, 1688, 2900
BstNSI	RCATGY	3 cut(s)	1854, 2270, 2963
BstSCI	CCNGG	5 cut(s)	408, 1337, 1360, 1686, 2898
BstSFI	CTRYAG	3 cut(s)	1857, 2479, 3453
BstUI	CGCG	2 cut(s)	734, 1177
BstV2I	GAAGAC	1 cut(s)	1292
BsuI	GTATCC	1 cut(s)	374
BtgI	CCRYGG	4 cut(s)	525, 1008, 2466, 3261
BtsCI	GGATG	9 cut(s)	1193, 1487, 1602, 1723, 2009, 2697, 2875, 3364, 3402
BtsI	GCAGTG	1 cut(s)	3450
BtsIMutI	CAGTG	5 cut(s)	1756, 2114, 3039, 3129, 3450
BtuMI	TCGCGA	1 cut(s)	734
BveI	ACCTGC	1 cut(s)	247
CciI	TCATGA	4 cut(s)	420, 921, 1615, 2923
CfoI	GCGC	9 cut(s)	212, 232, 302, 504, 580, 1015, 1021, 1856, 3094
Cfr10I	RCCGGY	3 cut(s)	302, 769, 1291
CpoI	CGGWCCG	1 cut(s)	442
CseI	GACGC	3 cut(s)	475, 518, 712
Csp6I	GTAC	6 cut(s)	1425, 1888, 2270, 2283, 2844, 3014
CspI	CGGWCCG	1 cut(s)	442
CviQI	GTAC	6 cut(s)	1425, 1888, 2270, 2283, 2844, 3014
DdeI	CTNAG	7 cut(s)	146, 612, 1052, 1622, 2310, 3027, 3389
DinI	GGCGCC	2 cut(s)	301, 1014
EaeI	YGGCCR	4 cut(s)	411, 2458, 2745, 3447
Eam1104I	CTCTTC	6 cut(s)	46, 113, 1799, 1897, 2925, 3507
EarI	CTCTTC	6 cut(s)	46, 113, 1799, 1897, 2925, 3507
EciI	GGCGGA	1 cut(s)	455
Eco130I	CCWWGG	8 cut(s)	525, 1166, 1254, 2466, 2862, 3001, 3087, 3199
Eco147I	AGGCCT	1 cut(s)	3198
Eco47I	GGWCC	6 cut(s)	270, 442, 1179, 1958, 2527, 2656
Eco57I	CTGAAG	7 cut(s)	299, 1732, 2006, 2219, 3207, 3296, 3488
Eco88I	CYCGRG	1 cut(s)	343
EcoNI	CCTNNNNNAGG	1 cut(s)	494
EcoRI	GAATTC	1 cut(s)	2053
EcoRII	CCWGG	4 cut(s)	1337, 1360, 1686, 2898
EcoT14I	CCWWGG	8 cut(s)	525, 1166, 1254, 2466, 2862, 3001, 3087, 3199
EgeI	GGCGCC	2 cut(s)	301, 1014
EheI	GGCGCC	2 cut(s)	301, 1014
ErhI	CCWWGG	8 cut(s)	525, 1166, 1254, 2466, 2862, 3001, 3087, 3199
FalI	AAGNNNNNCTT	2 cut(s)	2967, 2999
FaqI	GGGAC	7 cut(s)	361, 802, 941, 1532, 1535, 2834, 3241
FauI	CCCGC	2 cut(s)	1833, 2759
FbaI	TGATCA	4 cut(s)	396, 759, 3342, 3367
FokI	GGATG	9 cut(s)	1180, 1494, 1609, 1730, 1996, 2684, 2862, 3371, 3409
FspBI	CTAG	4 cut(s)	782, 1167, 1296, 1692
FspI	TGCGCA	1 cut(s)	1020
GlaI	GCGC	9 cut(s)	211, 231, 301, 503, 579, 1014, 1020, 1855, 3093
GsaI	CCCAGC	2 cut(s)	2655, 2705
GsuI	CTGGAG	3 cut(s)	638, 1812, 2201
HaeII	RGCGCY	5 cut(s)	213, 233, 303, 505, 1016
HapII	CCGG	7 cut(s)	303, 410, 445, 470, 770, 1292, 3438
HgaI	GACGC	3 cut(s)	475, 518, 712
HhaI	GCGC	9 cut(s)	212, 232, 302, 504, 580, 1015, 1021, 1856, 3094
Hin1I	GRCGYC	4 cut(s)	300, 387, 467, 1013
Hin6I	GCGC	9 cut(s)	210, 230, 300, 502, 578, 1013, 1019, 1854, 3092
HinP1I	GCGC	9 cut(s)	210, 230, 300, 502, 578, 1013, 1019, 1854, 3092
HindIII	AAGCTT	1 cut(s)	354
HpaII	CCGG	7 cut(s)	303, 410, 445, 470, 770, 1292, 3438
Hpy166II	GTNNAC	3 cut(s)	1126, 1367, 2527
Hpy8I	GTNNAC	3 cut(s)	1126, 1367, 2527
Hpy99I	CGWCG	4 cut(s)	389, 392, 512, 728
HpyCH4III	ACNGT	8 cut(s)	1009, 2071, 2099, 2122, 2780, 2848, 3133, 3433
HpyCH4IV	ACGT	1 cut(s)	387
HpyF3I	CTNAG	7 cut(s)	146, 612, 1052, 1622, 2310, 3027, 3389
HpySE526I	ACGT	1 cut(s)	387
Hsp92I	GRCGYC	4 cut(s)	300, 387, 467, 1013
HspAI	GCGC	9 cut(s)	210, 230, 300, 502, 578, 1013, 1019, 1854, 3092
KasI	GGCGCC	2 cut(s)	299, 1012
KroI	GCCGGC	2 cut(s)	302, 769
KroNI	GCCGGC	2 cut(s)	304, 771
Ksp22I	TGATCA	4 cut(s)	396, 759, 3342, 3367
LguI	GCTCTTC	1 cut(s)	3507
LmnI	GCTCC	9 cut(s)	207, 472, 481, 499, 962, 1924, 2635, 3440, 3488
LweI	GCATC	7 cut(s)	1202, 2293, 2383, 2557, 2578, 3021, 3349
MaeI	CTAG	4 cut(s)	782, 1167, 1296, 1692
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	6 cut(s)	1324, 1751, 1822, 2497, 2666, 3305
MbiI	CCGCTC	3 cut(s)	156, 573, 1187
MfeI	CAATTG	2 cut(s)	2403, 2868
MhlI	GDGCHC	1 cut(s)	2640
MlsI	TGGCCA	2 cut(s)	2747, 3449
MluNI	TGGCCA	2 cut(s)	2747, 3449
Mly113I	GGCGCC	2 cut(s)	300, 1013
MmeI	TCCRAC	5 cut(s)	84, 429, 1946, 2461, 2711
Mox20I	TGGCCA	2 cut(s)	2747, 3449
MroNI	GCCGGC	2 cut(s)	302, 769
MroXI	GAANNNNTTC	2 cut(s)	2949, 2979
MscI	TGGCCA	2 cut(s)	2747, 3449
MseI	TTAA	8 cut(s)	1500, 2340, 2348, 2931, 3146, 3155, 3207, 3489
MslI	CAYNNNNRTG	4 cut(s)	419, 2610, 2664, 3491
Msp20I	TGGCCA	2 cut(s)	2747, 3449
MspA1I	CMGCKG	2 cut(s)	250, 1048
MspI	CCGG	7 cut(s)	303, 410, 445, 470, 770, 1292, 3438
MspR9I	CCNGG	5 cut(s)	410, 1339, 1362, 1688, 2900
MunI	CAATTG	2 cut(s)	2403, 2868
Mva1269I	GAATGC	1 cut(s)	725
MvaI	CCWGG	4 cut(s)	1339, 1362, 1688, 2900
MvnI	CGCG	2 cut(s)	734, 1177
NaeI	GCCGGC	2 cut(s)	304, 771
NarI	GGCGCC	2 cut(s)	300, 1013
NciI	CCSGG	1 cut(s)	410
NcoI	CCATGG	2 cut(s)	525, 2466
NgoMIV	GCCGGC	2 cut(s)	302, 769
NlaIV	GGNNCC	6 cut(s)	301, 307, 1014, 1643, 2529, 2657
NmeAIII	GCCGAG	3 cut(s)	204, 592, 2268
NmuCI	GTSAC	4 cut(s)	1751, 2497, 2666, 3305
NruI	TCGCGA	1 cut(s)	734
NsbI	TGCGCA	1 cut(s)	1020
NspI	RCATGY	3 cut(s)	1854, 2270, 2963
PagI	TCATGA	4 cut(s)	420, 921, 1615, 2923
PaqCI	CACCTGC	1 cut(s)	247
PceI	AGGCCT	1 cut(s)	3198
PciI	ACATGT	2 cut(s)	2266, 2959
PciSI	GCTCTTC	1 cut(s)	3507
PcsI	WCGNNNNNNNCGW	1 cut(s)	2839
PctI	GAATGC	1 cut(s)	725
PdiI	GCCGGC	2 cut(s)	304, 771
PdmI	GAANNNNTTC	2 cut(s)	2949, 2979
PfeI	GAWTC	8 cut(s)	19, 286, 998, 1162, 1333, 1563, 1913, 3415
PflMI	CCANNNNNTGG	2 cut(s)	3125, 3337
PluTI	GGCGCC	2 cut(s)	303, 1016
PscI	ACATGT	2 cut(s)	2266, 2959
PsiI	TTATAA	1 cut(s)	810
Psp6I	CCWGG	4 cut(s)	1337, 1360, 1686, 2898
PspFI	CCCAGC	2 cut(s)	2651, 2701
PspGI	CCWGG	4 cut(s)	1337, 1360, 1686, 2898
PspN4I	GGNNCC	6 cut(s)	301, 307, 1014, 1643, 2529, 2657
PstI	CTGCAG	2 cut(s)	1861, 3457
RruI	TCGCGA	1 cut(s)	734
RsaI	GTAC	6 cut(s)	1426, 1889, 2271, 2284, 2845, 3015
RsaNI	GTAC	6 cut(s)	1425, 1888, 2270, 2283, 2844, 3014
RseI	CAYNNNNRTG	4 cut(s)	419, 2610, 2664, 3491
Rsr2I	CGGWCCG	1 cut(s)	442
RsrII	CGGWCCG	1 cut(s)	442
SapI	GCTCTTC	1 cut(s)	3507
SaqAI	TTAA	8 cut(s)	1500, 2340, 2348, 2931, 3146, 3155, 3207, 3489
ScrFI	CCNGG	5 cut(s)	410, 1339, 1362, 1688, 2900
SduI	GDGCHC	1 cut(s)	2640
SfaNI	GCATC	7 cut(s)	1202, 2293, 2383, 2557, 2578, 3021, 3349
SfcI	CTRYAG	3 cut(s)	1857, 2479, 3453
SfoI	GGCGCC	2 cut(s)	301, 1014
SinI	GGWCC	6 cut(s)	270, 442, 1179, 1958, 2527, 2656
SmiMI	CAYNNNNRTG	4 cut(s)	419, 2610, 2664, 3491
SmlI	CTYRAG	5 cut(s)	351, 914, 1655, 2819, 3139
SmoI	CTYRAG	5 cut(s)	351, 914, 1655, 2819, 3139
SseBI	AGGCCT	1 cut(s)	3198
SspDI	GGCGCC	2 cut(s)	299, 1012
SspI	AATATT	2 cut(s)	970, 1377
SspMI	CTAG	4 cut(s)	782, 1167, 1296, 1692
StuI	AGGCCT	1 cut(s)	3198
StyD4I	CCNGG	5 cut(s)	408, 1337, 1360, 1686, 2898
StyI	CCWWGG	8 cut(s)	525, 1166, 1254, 2466, 2862, 3001, 3087, 3199
TaaI	ACNGT	8 cut(s)	1009, 2071, 2099, 2122, 2780, 2848, 3133, 3433
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	6 cut(s)	336, 492, 726, 1456, 1561, 1966
TaqII	GACCGA	2 cut(s)	287, 440
TatI	WGTACW	2 cut(s)	1887, 3013
TauI	GCSGC	8 cut(s)	134, 178, 235, 253, 256, 691, 854, 1051
TfiI	GAWTC	8 cut(s)	19, 286, 998, 1162, 1333, 1563, 1913, 3415
Tru1I	TTAA	8 cut(s)	1500, 2340, 2348, 2931, 3146, 3155, 3207, 3489
Tru9I	TTAA	8 cut(s)	1500, 2340, 2348, 2931, 3146, 3155, 3207, 3489
TscAI	CASTG	5 cut(s)	1756, 2121, 3046, 3136, 3457
TseFI	GTSAC	4 cut(s)	1751, 2497, 2666, 3305
Tsp45I	GTSAC	4 cut(s)	1751, 2497, 2666, 3305
TspRI	CASTG	5 cut(s)	1756, 2121, 3046, 3136, 3457
Van91I	CCANNNNNTGG	2 cut(s)	3125, 3337
VpaK11BI	GGWCC	6 cut(s)	270, 442, 1179, 1958, 2527, 2656
XagI	CCTNNNNNAGG	1 cut(s)	494
XapI	RAATTY	6 cut(s)	1263, 1355, 1611, 1985, 2053, 3255
XceI	RCATGY	3 cut(s)	1854, 2270, 2963
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1222, 1318
XmaJI	CCTAGG	1 cut(s)	1166
XmnI	GAANNNNTTC	2 cut(s)	2949, 2979
XspI	CTAG	4 cut(s)	782, 1167, 1296, 1692
ZraI	GACGTC	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.