Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004821

Physical Location & Seq

Genomic Coordinates Forward (+)

63712590 .. 63716016

Gene Structure 3427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21361

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCTTTGCTTCGTCAACCTCTAGCACCTCTACCTTGTCTGCAAAACCCACTCCACCTCCCCAAACACAAACCCACAACTCTCTCTGTTTCCGGGCCTCTTTTCTCCCTCTCTCTTTCCTTATCTCACACCCACCACACTCCCACCTCTTCAATCAGGACCAAAAAGCTTGAATCTTTCGTGCTCCAATTCTCCTCCACAGCCCAGGAAGAAGCCATTGAAGAAAACCCAGTTCTTGTGGAGCCAGAAACTGAAGTGTTCTCTGACACCAGATTGCTTGCCCAGAATGTGCCTTGGACTTGTACCCCTGAAGACATTAGGACCATGTTCGAGAAGTACGGCACAGTCGTCGACGTTGAGCTTGCTATGTATAACAAGACCAGAAACAGGGGATTGGCGTTTGTGACTATGGCTTCACCAGAGGAGGCTCGTGTGGCTCTCAATAGTCTCGAATCGACTGAAATGGACGGTCGTATAATAAGGATGGCTTATGCCAAGCCAAAAAAGAAGAAGATTCCCCCTCCTATGCCATCCAAGGACATAACATTTAATTTGTATGTGGAAAATTTGTCATACGAAGTAAGGGCTAAAGATCTCAGGGAGTTTTTTACTTCAGAGGGTACTGATATTGTTAACGCAGAAGTGGTATTCGAAGGTAATCCTAGAAGGTCCGCTGGATATGCATTTGTGAGCTTCAAGTCCAAGAAAGAGGCTGAGGCTGCCCTTGCTACTTTCCACGGGAAGTTGTTTATGGGAAGAAAAATTCGCGTGGCACGTAGTAAACAATTTGTTAAAGTACCAACAGTTAAAGAACCAGCAGTAGAGAGTTCAGAGTCGGGTGATAATGATACTGAACTGAGTTCTACGTTGGAGCAAGTGATAGCAGATGACAGTGATAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

301

Amino Acids

33.65

Weight (kDa)

6.63

Isoelectric Point (pI)

45.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	95 - 160	2.7e-14	RNA recognition motif
RRM_1	PF00076	185 - 256	1.6e-15	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09040 AT4G09040
fragaria_vesca	FvH4_5g36390 FvH4_5g36390
malus_domestica	MD08G1189600.v1.1 MD08G1189900.v1.1 MD15G1377200.v1.1
prunus_persica	Prupe.1G523800_v2.0.a1 Prupe.1G523800_v2.0.a1
pyrus_communis	pycom08g16310 pycom15g33680 pycom15g33730
rosa_chinensis	RchiOBHm_Chr7g0238361
rosa_laevigata	RLG00000000915 RLG00000000916 RLG00000000917
rosa_multiflora	Rmu_sc0001371.1_g000023
rosa_roxburghii	Rroxscaffold_3G00223080
rosa_rugosa	Rorug07G0311900 Rorug07G0312300
rosa_samantha	Rh7AG467000 Rh7BG437800 Rh7CG484700 Rh7CG485000 Rh7CG485100 Rh7DG453100 Rh7DG453400 Rh7DG453500
rosa_wichuraiana	Rw7G038680 Rw7G038720 Rw7G038790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	351
AccII	CGCG	1 cut(s)	768
AciI	CCGC	1 cut(s)	672
AcsI	RAATTY	2 cut(s)	565, 762
AcuI	CTGAAG	3 cut(s)	273, 330, 597
AfaI	GTAC	4 cut(s)	304, 338, 622, 798
AfiI	CCNNNNNNNGG	1 cut(s)	387
AgsI	TTSAA	4 cut(s)	153, 173, 221, 697
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	3 cut(s)	169, 361, 693
AluI	AGCT	3 cut(s)	169, 361, 693
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	1 cut(s)	452
AlwNI	CAGNNNCTG	1 cut(s)	251
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	1 cut(s)	719
ApoI	RAATTY	2 cut(s)	565, 762
AspS9I	GGNCC	4 cut(s)	95, 159, 321, 669
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	2 cut(s)	408, 851
AsuII	TTCGAA	1 cut(s)	651
AvaII	GGWCC	3 cut(s)	159, 321, 669
BauI	CACGAG	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	186
BbvCI	CCTCAGC	1 cut(s)	714
BbvI	GCAGC	1 cut(s)	706
BccI	CCATC	2 cut(s)	478, 538
BceAI	ACGGC	1 cut(s)	355
BcgI	CGANNNNNNTGC	2 cut(s)	331, 365
BciT130I	CCWGG	1 cut(s)	206
BcnI	CCSGG	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	452
BfaI	CTAG	2 cut(s)	23, 663
BglII	AGATCT	1 cut(s)	592
BisI	GCNGC	1 cut(s)	720
BlsI	GCNGC	1 cut(s)	721
Bme1390I	CCNGG	2 cut(s)	94, 206
Bme18I	GGWCC	3 cut(s)	159, 321, 669
BmgT120I	GGNCC	4 cut(s)	95, 159, 321, 669
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	2 cut(s)	94, 206
BmrI	ACTGGG	1 cut(s)	224
BmuI	ACTGGG	1 cut(s)	224
BpiI	GAAGAC	1 cut(s)	318
Bpu10I	CCTNAGC	1 cut(s)	714
Bpu14I	TTCGAA	1 cut(s)	651
BpuMI	CCSGG	1 cut(s)	94
BsaAI	YACGTR	1 cut(s)	776
BsaJI	CCNNGG	4 cut(s)	204, 293, 534, 736
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	1 cut(s)	387
Bse1I	ACTGG	1 cut(s)	230
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	4 cut(s)	204, 293, 534, 736
BseGI	GGATG	2 cut(s)	489, 530
BseLI	CCNNNNNNNGG	1 cut(s)	387
BseMII	CTCAG	3 cut(s)	610, 705, 848
BseNI	ACTGG	1 cut(s)	230
BseRI	GAGGAG	2 cut(s)	184, 437
BseXI	GCAGC	1 cut(s)	706
Bsh1236I	CGCG	1 cut(s)	768
Bsh1285I	CGRYCG	1 cut(s)	472
BshFI	GGCC	1 cut(s)	97
BsiEI	CGRYCG	1 cut(s)	472
BsiHKAI	GWGCWC	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	93
BslI	CCNNNNNNNGG	1 cut(s)	387
BsmAI	GTCTC	1 cut(s)	452
BsnI	GGCC	1 cut(s)	97
Bsp119I	TTCGAA	1 cut(s)	651
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	1 cut(s)	592
BspACI	CCGC	1 cut(s)	672
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	3 cut(s)	609, 706, 849
BspFNI	CGCG	1 cut(s)	768
BspLI	GGNNCC	1 cut(s)	243
BspT104I	TTCGAA	1 cut(s)	651
BsrI	ACTGG	1 cut(s)	230
BssECI	CCNNGG	4 cut(s)	204, 293, 534, 736
BssMI	GATC	1 cut(s)	592
BssSI	CACGAG	1 cut(s)	429
BssT1I	CCWWGG	2 cut(s)	293, 534
Bst2BI	CACGAG	1 cut(s)	429
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	4 cut(s)	346, 470, 805, 893
Bst6I	CTCTTC	1 cut(s)	154
BstBAI	YACGTR	1 cut(s)	776
BstBI	TTCGAA	1 cut(s)	651
BstC8I	GCNNGC	2 cut(s)	279, 363
BstDEI	CTNAG	3 cut(s)	596, 714, 857
BstDSI	CCRYGG	1 cut(s)	736
BstF5I	GGATG	2 cut(s)	489, 530
BstFNI	CGCG	1 cut(s)	768
BstKTI	GATC	1 cut(s)	595
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	1 cut(s)	592
BstMCI	CGRYCG	1 cut(s)	472
BstMWI	GCNNNNNNNGC	4 cut(s)	434, 680, 719, 725
BstNI	CCWGG	1 cut(s)	206
BstSCI	CCNGG	2 cut(s)	92, 204
BstUI	CGCG	1 cut(s)	768
BstV1I	GCAGC	1 cut(s)	706
BstV2I	GAAGAC	1 cut(s)	318
BstX2I	RGATCY	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	592
BsuRI	GGCC	1 cut(s)	97
BtgI	CCRYGG	1 cut(s)	736
BtsCI	GGATG	2 cut(s)	489, 530
BtsIMutI	CAGTG	1 cut(s)	898
Cac8I	GCNNGC	2 cut(s)	279, 363
CaiI	CAGNNNCTG	1 cut(s)	251
Cfr13I	GGNCC	4 cut(s)	95, 159, 321, 669
Csp6I	GTAC	4 cut(s)	303, 337, 621, 797
CviAII	CATG	1 cut(s)	325
CviQI	GTAC	4 cut(s)	303, 337, 621, 797
DdeI	CTNAG	3 cut(s)	596, 714, 857
DpnI	GATC	1 cut(s)	594
DpnII	GATC	1 cut(s)	592
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
Eco130I	CCWWGG	2 cut(s)	293, 534
Eco47I	GGWCC	3 cut(s)	159, 321, 669
Eco57I	CTGAAG	3 cut(s)	273, 330, 597
EcoRII	CCWGG	1 cut(s)	204
EcoT14I	CCWWGG	2 cut(s)	293, 534
EcoT22I	ATGCAT	1 cut(s)	685
ErhI	CCWWGG	2 cut(s)	293, 534
FaeI	CATG	1 cut(s)	328
FalI	AAGNNNNNCTT	2 cut(s)	472, 504
FatI	CATG	1 cut(s)	324
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	1 cut(s)	720
FokI	GGATG	2 cut(s)	496, 517
Fsp4HI	GCNGC	1 cut(s)	720
FspBI	CTAG	2 cut(s)	23, 663
GluI	GCNGC	1 cut(s)	720
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	1 cut(s)	328
HincII	GTYRAC	3 cut(s)	17, 352, 634
HindII	GTYRAC	3 cut(s)	17, 352, 634
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	4 cut(s)	173, 452, 514, 833
HpaI	GTTAAC	1 cut(s)	634
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	408, 851
Hpy166II	GTNNAC	4 cut(s)	17, 352, 634, 782
Hpy188I	TCNGA	3 cut(s)	265, 616, 832
Hpy188III	TCNNGA	3 cut(s)	157, 331, 449
Hpy8I	GTNNAC	4 cut(s)	17, 352, 634, 782
Hpy99I	CGWCG	2 cut(s)	353, 356
HpyAV	CCTTC	2 cut(s)	647, 660
HpyCH4III	ACNGT	4 cut(s)	346, 470, 805, 893
HpyCH4IV	ACGT	3 cut(s)	354, 775, 866
HpyCH4V	TGCA	2 cut(s)	43, 683
HpyF10VI	GCNNNNNNNGC	4 cut(s)	434, 680, 719, 725
HpyF3I	CTNAG	3 cut(s)	596, 714, 857
HpySE526I	ACGT	3 cut(s)	354, 775, 866
Hsp92II	CATG	1 cut(s)	328
KspAI	GTTAAC	1 cut(s)	634
Kzo9I	GATC	1 cut(s)	592
LmnI	GCTCC	3 cut(s)	189, 241, 871
Lsp1109I	GCAGC	1 cut(s)	706
MaeI	CTAG	2 cut(s)	23, 663
MaeII	ACGT	3 cut(s)	354, 775, 866
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	1 cut(s)	594
MboI	GATC	1 cut(s)	592
MboII	GAAGA	7 cut(s)	141, 221, 233, 323, 520, 523, 768
MflI	RGATCY	1 cut(s)	592
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	5 cut(s)	188, 550, 565, 762, 785
MlyI	GAGTC	1 cut(s)	842
MmeI	TCCRAC	1 cut(s)	849
Mph1103I	ATGCAT	1 cut(s)	685
MseI	TTAA	4 cut(s)	549, 633, 792, 807
MspA1I	CMGCKG	1 cut(s)	674
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	2 cut(s)	94, 206
MvaI	CCWGG	1 cut(s)	206
MvnI	CGCG	1 cut(s)	768
MwoI	GCNNNNNNNGC	4 cut(s)	434, 680, 719, 725
NciI	CCSGG	1 cut(s)	94
NdeII	GATC	1 cut(s)	592
NlaIII	CATG	1 cut(s)	328
NlaIV	GGNNCC	1 cut(s)	243
NmuCI	GTSAC	1 cut(s)	403
NsiI	ATGCAT	1 cut(s)	685
NspV	TTCGAA	1 cut(s)	651
PcsI	WCGNNNNNNNCGW	2 cut(s)	345, 772
PfeI	GAWTC	3 cut(s)	173, 452, 514
PkrI	GCNGC	1 cut(s)	721
PleI	GAGTC	1 cut(s)	841
PpsI	GAGTC	1 cut(s)	841
Ppu21I	YACGTR	1 cut(s)	776
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	4 cut(s)	95, 159, 321, 669
PstNI	CAGNNNCTG	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	592
RsaI	GTAC	4 cut(s)	304, 338, 622, 798
RsaNI	GTAC	4 cut(s)	303, 337, 621, 797
SalI	GTCGAC	1 cut(s)	350
SaqAI	TTAA	4 cut(s)	549, 633, 792, 807
SatI	GCNGC	1 cut(s)	720
Sau3AI	GATC	1 cut(s)	592
Sau96I	GGNCC	4 cut(s)	95, 159, 321, 669
SchI	GAGTC	1 cut(s)	842
ScrFI	CCNGG	2 cut(s)	94, 206
SduI	GDGCHC	1 cut(s)	186
SfuI	TTCGAA	1 cut(s)	651
SgrDI	CGTCGACG	1 cut(s)	350
SinI	GGWCC	3 cut(s)	159, 321, 669
Sse9I	AATT	5 cut(s)	188, 550, 565, 762, 785
SsiI	CCGC	1 cut(s)	672
SspMI	CTAG	2 cut(s)	23, 663
StyD4I	CCNGG	2 cut(s)	92, 204
StyI	CCWWGG	2 cut(s)	293, 534
TaaI	ACNGT	4 cut(s)	346, 470, 805, 893
TaiI	ACGT	3 cut(s)	357, 778, 869
TaqI	TCGA	5 cut(s)	330, 351, 450, 455, 651
TasI	AATT	5 cut(s)	188, 550, 565, 762, 785
TfiI	GAWTC	3 cut(s)	173, 452, 514
Tru1I	TTAA	4 cut(s)	549, 633, 792, 807
Tru9I	TTAA	4 cut(s)	549, 633, 792, 807
TscAI	CASTG	1 cut(s)	898
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	1 cut(s)	719
Tsp45I	GTSAC	1 cut(s)	403
TspRI	CASTG	1 cut(s)	898
VpaK11BI	GGWCC	3 cut(s)	159, 321, 669
XapI	RAATTY	2 cut(s)	565, 762
XmiI	GTMKAC	1 cut(s)	351
XspI	CTAG	2 cut(s)	23, 663
Zsp2I	ATGCAT	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.