Rh7DG453100

kDa ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004821
Physical Location & Seq
Forward (+)
64536939 .. 64537480
542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG453100.1

Sequence Viewer

Length: 381 bp
ATGGACGGTCGTATAATAAGGATGGCTTATGCCAAGCCAAAAAAGAAGAAGATTCCCCCTCCTATGCCATCCAAGGACATAACATTTAATTTGGATGTGGAAAATTTGTCATACGAAGCAAGGGCTAAAGATCTCAGGGAGTTTTTTACTTCAGAGGGTACTGATATTGTTAACGCAGAAGTGGTATTCGAAGGTAATCCTAGAAGGTCCGCTGGATATGCATTTGTGAGCTTCAAGTCCAAGAAAGAGGCTGAGGCTGCCCTTGCTACTTTCCACGGGAAGTTGTTTATGGGAAGAAAAATTTGTTTGGCACGTAGTAAACAATTTGTTAAAGTACCAACAGTTAAAAGAACCACCAGTAGAGAGTTCAGAGTCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03018 map03013 map03015 map03018
Pfam Domains
Protein Families
RRM_1

Protein Analysis

126

Amino Acids

14.29

Weight (kDa)

10.09

Isoelectric Point (pI)

35.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 33 - 101 2.7e-14 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 210
AcsI RAATTY 2 cut(s) 103, 300
AcuI CTGAAG 1 cut(s) 135
AfaI GTAC 2 cut(s) 160, 336
AgsI TTSAA 1 cut(s) 235
AluBI AGCT 1 cut(s) 231
AluI AGCT 1 cut(s) 231
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 2 cut(s) 103, 300
AspS9I GGNCC 1 cut(s) 207
AsuII TTCGAA 1 cut(s) 189
AvaII GGWCC 1 cut(s) 207
BbvCI CCTCAGC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 244
BccI CCATC 2 cut(s) 16, 76
BfaI CTAG 1 cut(s) 201
BglII AGATCT 1 cut(s) 130
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
Bme18I GGWCC 1 cut(s) 207
BmgT120I GGNCC 1 cut(s) 207
Bpu10I CCTNAGC 1 cut(s) 252
Bpu14I TTCGAA 1 cut(s) 189
BsaAI YACGTR 1 cut(s) 314
BsaJI CCNNGG 2 cut(s) 72, 274
Bse1I ACTGG 1 cut(s) 357
BseDI CCNNGG 2 cut(s) 72, 274
BseGI GGATG 3 cut(s) 27, 68, 100
BseMII CTCAG 2 cut(s) 148, 243
BseNI ACTGG 1 cut(s) 357
BseXI GCAGC 1 cut(s) 244
Bsh1285I CGRYCG 1 cut(s) 10
BsiEI CGRYCG 1 cut(s) 10
Bsp119I TTCGAA 1 cut(s) 189
Bsp143I GATC 1 cut(s) 130
BspACI CCGC 1 cut(s) 210
BspCNI CTCAG 2 cut(s) 147, 244
BspT104I TTCGAA 1 cut(s) 189
BsrI ACTGG 1 cut(s) 357
BssECI CCNNGG 2 cut(s) 72, 274
BssMI GATC 1 cut(s) 130
BssT1I CCWWGG 1 cut(s) 72
Bst4CI ACNGT 2 cut(s) 8, 343
BstBAI YACGTR 1 cut(s) 314
BstBI TTCGAA 1 cut(s) 189
BstDEI CTNAG 2 cut(s) 134, 252
BstDSI CCRYGG 1 cut(s) 274
BstF5I GGATG 3 cut(s) 27, 68, 100
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstMCI CGRYCG 1 cut(s) 10
BstMWI GCNNNNNNNGC 3 cut(s) 218, 257, 263
BstV1I GCAGC 1 cut(s) 244
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BtgI CCRYGG 1 cut(s) 274
BtsCI GGATG 3 cut(s) 27, 68, 100
Cfr13I GGNCC 1 cut(s) 207
Csp6I GTAC 2 cut(s) 159, 335
CviJI RGCY 6 cut(s) 26, 37, 125, 231, 251, 257
CviKI_1 RGCY 6 cut(s) 26, 37, 125, 231, 251, 257
CviQI GTAC 2 cut(s) 159, 335
DdeI CTNAG 2 cut(s) 134, 252
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 72
Eco47I GGWCC 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 72
EcoT22I ATGCAT 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 72
FaiI YATR 7 cut(s) 14, 30, 65, 80, 112, 219, 290
FalI AAGNNNNNCTT 2 cut(s) 10, 42
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 3 cut(s) 34, 55, 107
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 1 cut(s) 201
GluI GCNGC 1 cut(s) 258
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 2 cut(s) 52, 372
HpaI GTTAAC 1 cut(s) 172
Hpy166II GTNNAC 2 cut(s) 172, 320
Hpy188I TCNGA 2 cut(s) 154, 371
Hpy8I GTNNAC 2 cut(s) 172, 320
HpyAV CCTTC 2 cut(s) 185, 198
HpyCH4III ACNGT 2 cut(s) 8, 343
HpyCH4IV ACGT 1 cut(s) 313
HpyCH4V TGCA 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 257, 263
HpyF3I CTNAG 2 cut(s) 134, 252
HpySE526I ACGT 1 cut(s) 313
KspAI GTTAAC 1 cut(s) 172
Kzo9I GATC 1 cut(s) 130
LpnPI CCDG 3 cut(s) 121, 198, 370
Lsp1109I GCAGC 1 cut(s) 244
MaeI CTAG 1 cut(s) 201
MaeII ACGT 1 cut(s) 313
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 3 cut(s) 58, 61, 306
MflI RGATCY 1 cut(s) 130
MluCI AATT 4 cut(s) 88, 103, 300, 323
MlyI GAGTC 1 cut(s) 381
MnlI CCTC 4 cut(s) 69, 148, 241, 247
Mph1103I ATGCAT 1 cut(s) 223
MseI TTAA 4 cut(s) 87, 171, 330, 345
MspA1I CMGCKG 1 cut(s) 212
MwoI GCNNNNNNNGC 3 cut(s) 218, 257, 263
NdeII GATC 1 cut(s) 130
NsiI ATGCAT 1 cut(s) 223
NspV TTCGAA 1 cut(s) 189
PfeI GAWTC 1 cut(s) 52
PkrI GCNGC 1 cut(s) 259
PleI GAGTC 1 cut(s) 380
PpsI GAGTC 1 cut(s) 380
Ppu21I YACGTR 1 cut(s) 314
PspPI GGNCC 1 cut(s) 207
PsuI RGATCY 1 cut(s) 130
RsaI GTAC 2 cut(s) 160, 336
RsaNI GTAC 2 cut(s) 159, 335
SaqAI TTAA 4 cut(s) 87, 171, 330, 345
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 1 cut(s) 207
SchI GAGTC 1 cut(s) 381
SetI ASST 4 cut(s) 196, 209, 233, 316
SfuI TTCGAA 1 cut(s) 189
SinI GGWCC 1 cut(s) 207
Sse9I AATT 4 cut(s) 88, 103, 300, 323
SsiI CCGC 1 cut(s) 210
SspMI CTAG 1 cut(s) 201
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 2 cut(s) 8, 343
TaiI ACGT 1 cut(s) 316
TaqI TCGA 1 cut(s) 189
TasI AATT 4 cut(s) 88, 103, 300, 323
TfiI GAWTC 1 cut(s) 52
Tru1I TTAA 4 cut(s) 87, 171, 330, 345
Tru9I TTAA 4 cut(s) 87, 171, 330, 345
TseI GCWGC 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 207
XapI RAATTY 2 cut(s) 103, 300
XspI CTAG 1 cut(s) 201
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.