Rw7G038680

kDa ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0004821
Physical Location & Seq
Forward (+)
59193184 .. 59193788
605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G038680.1

Sequence Viewer

Length: 444 bp
ATGGATGGTCGTATAATAAGGATGGCTTATGCCAAGCCAAAAAAGAAGAAGATTGCCCCTCCTATGCCATCCAAGGACATAACATTTAATTTGGATGTGGAAAATTTGTCATACGAAGCAAGGGCTAAAGATCTCAGGGAGTTTTTTACTTCAGAGGGTACTGATATTGTTAACGCAGAAGTGGTATTCGAAGGTAATCCTAGAAGGTCCGCTGGATATGCATTTGTGAGCTTCAAGTCCAAGAAAGAGGCTGAGGCTGCCCTTGCTACTTTCCACGGGAAGTTGTTTATGGGAAGAAAAATTCGTGTGGCACATAGTAAACAATTTGTTAAAGTACCAACAGTTAAAGAACCAGCAGTAGAGAGTTCAGAGTCGGGTGATAATGCTACTGAACTGAGTTCTACTCCGGAGCAAGTGATAGCAGATGACAGTGATAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03018 map03013 map03015 map03018
Pfam Domains
Protein Families
RRM_1

Protein Analysis

147

Amino Acids

16.32

Weight (kDa)

9.05

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 33 - 102 1.7e-14 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 406
AciI CCGC 1 cut(s) 210
AcsI RAATTY 2 cut(s) 103, 300
AcuI CTGAAG 1 cut(s) 135
AfaI GTAC 2 cut(s) 160, 336
AgsI TTSAA 1 cut(s) 235
AluBI AGCT 1 cut(s) 231
AluI AGCT 1 cut(s) 231
Aor13HI TCCGGA 1 cut(s) 406
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 2 cut(s) 103, 300
AspS9I GGNCC 1 cut(s) 207
AsuHPI GGTGA 1 cut(s) 389
AsuII TTCGAA 1 cut(s) 189
AvaII GGWCC 1 cut(s) 207
BbvCI CCTCAGC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 244
BccI CCATC 2 cut(s) 16, 76
BfaI CTAG 1 cut(s) 201
BglII AGATCT 1 cut(s) 130
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
Bme18I GGWCC 1 cut(s) 207
BmgT120I GGNCC 1 cut(s) 207
BplI GAGNNNNNCTC 2 cut(s) 388, 420
Bpu10I CCTNAGC 1 cut(s) 252
Bpu14I TTCGAA 1 cut(s) 189
BsaJI CCNNGG 2 cut(s) 72, 274
BsaWI WCCGGW 1 cut(s) 406
BseAI TCCGGA 1 cut(s) 406
BseDI CCNNGG 2 cut(s) 72, 274
BseGI GGATG 4 cut(s) 10, 27, 68, 100
BseMII CTCAG 3 cut(s) 148, 243, 386
BseXI GCAGC 1 cut(s) 244
BsiSI CCGG 1 cut(s) 407
Bsp119I TTCGAA 1 cut(s) 189
Bsp13I TCCGGA 1 cut(s) 406
Bsp143I GATC 1 cut(s) 130
BspACI CCGC 1 cut(s) 210
BspCNI CTCAG 3 cut(s) 147, 244, 387
BspEI TCCGGA 1 cut(s) 406
BspT104I TTCGAA 1 cut(s) 189
BssECI CCNNGG 2 cut(s) 72, 274
BssMI GATC 1 cut(s) 130
BssT1I CCWWGG 1 cut(s) 72
Bst4CI ACNGT 2 cut(s) 343, 431
BstBI TTCGAA 1 cut(s) 189
BstDEI CTNAG 3 cut(s) 134, 252, 395
BstDSI CCRYGG 1 cut(s) 274
BstF5I GGATG 4 cut(s) 10, 27, 68, 100
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 3 cut(s) 218, 257, 263
BstV1I GCAGC 1 cut(s) 244
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BtgI CCRYGG 1 cut(s) 274
BtsCI GGATG 4 cut(s) 10, 27, 68, 100
BtsIMutI CAGTG 1 cut(s) 436
Cfr13I GGNCC 1 cut(s) 207
Csp6I GTAC 2 cut(s) 159, 335
CviJI RGCY 6 cut(s) 26, 37, 125, 231, 251, 257
CviKI_1 RGCY 6 cut(s) 26, 37, 125, 231, 251, 257
CviQI GTAC 2 cut(s) 159, 335
DdeI CTNAG 3 cut(s) 134, 252, 395
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 72
Eco47I GGWCC 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 72
EcoT22I ATGCAT 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 72
FaiI YATR 8 cut(s) 14, 30, 65, 80, 112, 219, 290, 315
FalI AAGNNNNNCTT 2 cut(s) 10, 42
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 4 cut(s) 17, 34, 55, 107
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 1 cut(s) 201
GluI GCNGC 1 cut(s) 258
HapII CCGG 1 cut(s) 407
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 1 cut(s) 371
HpaI GTTAAC 1 cut(s) 172
HpaII CCGG 1 cut(s) 407
HphI GGTGA 1 cut(s) 389
Hpy166II GTNNAC 2 cut(s) 172, 320
Hpy188I TCNGA 2 cut(s) 154, 370
Hpy188III TCNNGA 1 cut(s) 407
Hpy8I GTNNAC 2 cut(s) 172, 320
HpyAV CCTTC 2 cut(s) 185, 198
HpyCH4III ACNGT 2 cut(s) 343, 431
HpyCH4V TGCA 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 257, 263
HpyF3I CTNAG 3 cut(s) 134, 252, 395
Kpn2I TCCGGA 1 cut(s) 406
KspAI GTTAAC 1 cut(s) 172
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 1 cut(s) 409
LpnPI CCDG 4 cut(s) 121, 198, 366, 420
Lsp1109I GCAGC 1 cut(s) 244
MaeI CTAG 1 cut(s) 201
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 3 cut(s) 58, 61, 306
MflI RGATCY 1 cut(s) 130
MluCI AATT 4 cut(s) 88, 103, 300, 323
MlyI GAGTC 1 cut(s) 380
MnlI CCTC 4 cut(s) 69, 148, 241, 247
Mph1103I ATGCAT 1 cut(s) 223
MroI TCCGGA 1 cut(s) 406
MseI TTAA 4 cut(s) 87, 171, 330, 345
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 1 cut(s) 407
MwoI GCNNNNNNNGC 3 cut(s) 218, 257, 263
NdeII GATC 1 cut(s) 130
NsiI ATGCAT 1 cut(s) 223
NspV TTCGAA 1 cut(s) 189
PkrI GCNGC 1 cut(s) 259
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
PspPI GGNCC 1 cut(s) 207
PsuI RGATCY 1 cut(s) 130
RsaI GTAC 2 cut(s) 160, 336
RsaNI GTAC 2 cut(s) 159, 335
SaqAI TTAA 4 cut(s) 87, 171, 330, 345
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 1 cut(s) 207
SchI GAGTC 1 cut(s) 380
SetI ASST 3 cut(s) 196, 209, 233
SfuI TTCGAA 1 cut(s) 189
SinI GGWCC 1 cut(s) 207
Sse9I AATT 4 cut(s) 88, 103, 300, 323
SsiI CCGC 1 cut(s) 210
SspMI CTAG 1 cut(s) 201
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 2 cut(s) 343, 431
TaqI TCGA 1 cut(s) 189
TasI AATT 4 cut(s) 88, 103, 300, 323
Tru1I TTAA 4 cut(s) 87, 171, 330, 345
Tru9I TTAA 4 cut(s) 87, 171, 330, 345
TscAI CASTG 1 cut(s) 436
TseI GCWGC 1 cut(s) 257
TspRI CASTG 1 cut(s) 436
VpaK11BI GGWCC 1 cut(s) 207
XapI RAATTY 2 cut(s) 103, 300
XspI CTAG 1 cut(s) 201
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.