Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004821

Physical Location & Seq

Genomic Coordinates Reverse (-)

42900837 .. 42905191

Gene Structure 4355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G523800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCTTTGCTTCGTTATCCTTGTTTCCTCACAGAACAAGTCGTCCATCTAACGCCTCTACTGTCTCTGCAAAACCCACAACACCTCTCCAAGCACACACCAACCACTCTCTCTCTTTCTGGGTCTCTTTCCTCACTCTCTCTTTCTCTCCCACACACCCACACTCGCTCATCTTCCATAACTCGGACCAAAAGGCTGAGCAACTTCGTTTTCCAATTCTCCTCTACTGCTCAAGAACAAGCTCTTGATGAAAGCCCAGTGCTGGAGGCAGAGCCCGAAGAGTTCTCTGATACAAGATTGCTTGCCCAAAATGTGCCTTGGACTTGTACCCCAGAGGACATTCGTACTCTGTTCGAGAAGTACGGCACCGTCGTTGACGTTGAGCTTGCCATGTATAACAAGACCAGAAACAGGGGTTTGGCATTTGTAACAATGGGTTCACCGGAGGAGGCTCTTGCGGCTCTCAACAATCTAGAATCTTCTGAAATGGAGGGTCGTATTATAAAGATGGCTTATGCCAAGCCGAAAAAGACGAAGATTCCCCCTCCTTCTTCGCAACCCAAGCCAGTAACTTTCAATTTGTATGTGGAAAATTTGCCATACGGAGCAAGGTCTAAAGATCTCAAGGAGCTTTTTAATTCAGAGGATTGTAGTGTTGTTACCGCGGAAGTTGTATTCCAAGGTAATCCGAGAAGGTCCGCAGGATATGGATTTGTGGGCTTCAAATCCAAGAAAGAGGCTGAGGCAGCCCTTTCTGCTTTCCACGGGAAGTTGCTTATGGGAAGACGAATTCGTGTGGCACGTGGTAAACAATTTGTTAAAGTACCAAAAGAAGAGAGTTCACAGTTGGGTGATGAATCTACTGAATTGAATTCTATTGTCGAGCAAGTGAACACAGATGTCAATGATACAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

306

Amino Acids

33.9

Weight (kDa)

7.03

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09040 AT4G09040
fragaria_vesca	FvH4_5g36390 FvH4_5g36390
malus_domestica	MD08G1189600.v1.1 MD08G1189900.v1.1 MD15G1377200.v1.1
prunus_persica	Prupe.1G523800_v2.0.a1 Prupe.1G523800_v2.0.a1
pyrus_communis	pycom08g16310 pycom15g33680 pycom15g33730
rosa_chinensis	RchiOBHm_Chr7g0238361
rosa_laevigata	RLG00000000915 RLG00000000916 RLG00000000917
rosa_multiflora	Rmu_sc0001371.1_g000023
rosa_roxburghii	Rroxscaffold_3G00223080
rosa_rugosa	Rorug07G0311900 Rorug07G0312300
rosa_samantha	Rh7AG467000 Rh7BG437800 Rh7CG484700 Rh7CG485000 Rh7CG485100 Rh7DG453100 Rh7DG453400 Rh7DG453500
rosa_wichuraiana	Rw7G038680 Rw7G038720 Rw7G038790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	503
AccB1I	GGYRCC	1 cut(s)	365
AccII	CGCG	1 cut(s)	665
AciI	CCGC	4 cut(s)	458, 663, 665, 699
AcsI	RAATTY	3 cut(s)	592, 789, 871
AcvI	CACGTG	1 cut(s)	803
AfaI	GTAC	4 cut(s)	328, 346, 362, 825
AfiI	CCNNNNNNNGG	3 cut(s)	183, 262, 411
AgsI	TTSAA	3 cut(s)	577, 724, 871
AloI	GAACNNNNNNTCC	2 cut(s)	27, 59
AluBI	AGCT	3 cut(s)	242, 385, 631
AluI	AGCT	3 cut(s)	242, 385, 631
Alw26I	GTCTC	2 cut(s)	69, 129
ApeKI	GCWGC	1 cut(s)	746
ApoI	RAATTY	3 cut(s)	592, 789, 871
AspS9I	GGNCC	2 cut(s)	186, 696
AsuHPI	GGTGA	2 cut(s)	432, 863
AvaII	GGWCC	2 cut(s)	186, 696
BanI	GGYRCC	1 cut(s)	365
BanII	GRGCYC	1 cut(s)	276
BbrPI	CACGTG	1 cut(s)	803
BbsI	GAAGAC	1 cut(s)	790
BbvCI	CCTCAGC	1 cut(s)	741
BbvI	GCAGC	1 cut(s)	758
BccI	CCATC	2 cut(s)	54, 502
BceAI	ACGGC	1 cut(s)	379
BcoDI	GTCTC	2 cut(s)	69, 129
BfaI	CTAG	1 cut(s)	473
BglII	AGATCT	1 cut(s)	619
BisI	GCNGC	2 cut(s)	459, 747
BlpI	GCTNAGC	1 cut(s)	197
BlsI	GCNGC	2 cut(s)	460, 748
Bme18I	GGWCC	2 cut(s)	186, 696
BmgT120I	GGNCC	2 cut(s)	186, 696
BmiI	GGNNCC	1 cut(s)	367
BmrI	ACTGGG	1 cut(s)	251
BmuI	ACTGGG	1 cut(s)	251
BpiI	GAAGAC	1 cut(s)	790
BpmI	CTGGAG	1 cut(s)	284
Bpu10I	CCTNAGC	1 cut(s)	741
Bpu1102I	GCTNAGC	1 cut(s)	197
BpuEI	CTTGAG	2 cut(s)	216, 608
BsaAI	YACGTR	1 cut(s)	803
BsaI	GGTCTC	1 cut(s)	129
BsaJI	CCNNGG	4 cut(s)	317, 663, 679, 763
BsaWI	WCCGGW	1 cut(s)	442
Bsc4I	CCNNNNNNNGG	3 cut(s)	183, 262, 411
Bse1I	ACTGG	2 cut(s)	257, 566
BseDI	CCNNGG	4 cut(s)	317, 663, 679, 763
BseLI	CCNNNNNNNGG	3 cut(s)	183, 262, 411
BseMII	CTCAG	2 cut(s)	188, 732
BseNI	ACTGG	2 cut(s)	257, 566
BseRI	GAGGAG	2 cut(s)	211, 461
BseXI	GCAGC	1 cut(s)	758
Bsh1236I	CGCG	1 cut(s)	665
BshNI	GGYRCC	1 cut(s)	365
BsiSI	CCGG	1 cut(s)	443
BslI	CCNNNNNNNGG	3 cut(s)	183, 262, 411
BsmAI	GTCTC	2 cut(s)	69, 129
Bso31I	GGTCTC	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	1 cut(s)	619
Bsp1720I	GCTNAGC	1 cut(s)	197
BspACI	CCGC	4 cut(s)	458, 663, 665, 699
BspCNI	CTCAG	2 cut(s)	189, 733
BspFNI	CGCG	1 cut(s)	665
BspLI	GGNNCC	1 cut(s)	367
BspT107I	GGYRCC	1 cut(s)	365
BspTNI	GGTCTC	1 cut(s)	129
BsrI	ACTGG	2 cut(s)	257, 566
BssECI	CCNNGG	4 cut(s)	317, 663, 679, 763
BssMI	GATC	1 cut(s)	619
BssT1I	CCWWGG	2 cut(s)	317, 679
Bst4CI	ACNGT	3 cut(s)	63, 370, 846
Bst6I	CTCTTC	2 cut(s)	273, 828
BstBAI	YACGTR	1 cut(s)	803
BstC8I	GCNNGC	2 cut(s)	303, 387
BstDEI	CTNAG	2 cut(s)	197, 741
BstDSI	CCRYGG	2 cut(s)	663, 763
BstFNI	CGCG	1 cut(s)	665
BstKTI	GATC	1 cut(s)	622
BstMAI	GTCTC	2 cut(s)	69, 129
BstMBI	GATC	1 cut(s)	619
BstMWI	GCNNNNNNNGC	4 cut(s)	458, 562, 746, 755
BstUI	CGCG	1 cut(s)	665
BstV1I	GCAGC	1 cut(s)	758
BstV2I	GAAGAC	1 cut(s)	790
BstX2I	RGATCY	1 cut(s)	619
BstYI	RGATCY	1 cut(s)	619
BtgI	CCRYGG	2 cut(s)	663, 763
BtsIMutI	CAGTG	1 cut(s)	264
Cac8I	GCNNGC	2 cut(s)	303, 387
Cfr13I	GGNCC	2 cut(s)	186, 696
Cfr42I	CCGCGG	1 cut(s)	666
Csp6I	GTAC	4 cut(s)	327, 345, 361, 824
CviAII	CATG	1 cut(s)	391
CviQI	GTAC	4 cut(s)	327, 345, 361, 824
DdeI	CTNAG	2 cut(s)	197, 741
DpnI	GATC	1 cut(s)	621
DpnII	GATC	1 cut(s)	619
Eam1104I	CTCTTC	2 cut(s)	273, 828
EarI	CTCTTC	2 cut(s)	273, 828
Eco130I	CCWWGG	2 cut(s)	317, 679
Eco24I	GRGCYC	1 cut(s)	276
Eco31I	GGTCTC	1 cut(s)	129
Eco47I	GGWCC	2 cut(s)	186, 696
Eco72I	CACGTG	1 cut(s)	803
EcoRI	GAATTC	2 cut(s)	789, 871
EcoT14I	CCWWGG	2 cut(s)	317, 679
EcoT38I	GRGCYC	1 cut(s)	276
ErhI	CCWWGG	2 cut(s)	317, 679
FaeI	CATG	1 cut(s)	394
FaiI	YATR	9 cut(s)	179, 392, 396, 503, 516, 585, 601, 708, 779
FatI	CATG	1 cut(s)	390
Fnu4HI	GCNGC	2 cut(s)	459, 747
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	2 cut(s)	459, 747
FspBI	CTAG	1 cut(s)	473
GluI	GCNGC	2 cut(s)	459, 747
GsuI	CTGGAG	1 cut(s)	284
HapII	CCGG	1 cut(s)	443
Hin1II	CATG	1 cut(s)	394
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	3 cut(s)	476, 538, 857
HpaII	CCGG	1 cut(s)	443
HphI	GGTGA	2 cut(s)	432, 863
Hpy166II	GTNNAC	5 cut(s)	376, 440, 809, 842, 892
Hpy188I	TCNGA	5 cut(s)	186, 289, 484, 643, 690
Hpy188III	TCNNGA	4 cut(s)	233, 245, 355, 473
Hpy8I	GTNNAC	5 cut(s)	376, 440, 809, 842, 892
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	2 cut(s)	558, 687
HpyCH4III	ACNGT	3 cut(s)	63, 370, 846
HpyCH4IV	ACGT	2 cut(s)	378, 802
HpyCH4V	TGCA	1 cut(s)	70
HpyF10VI	GCNNNNNNNGC	4 cut(s)	458, 562, 746, 755
HpyF3I	CTNAG	2 cut(s)	197, 741
HpySE526I	ACGT	2 cut(s)	378, 802
Hsp92II	CATG	1 cut(s)	394
KspI	CCGCGG	1 cut(s)	666
Kzo9I	GATC	1 cut(s)	619
LmnI	GCTCC	2 cut(s)	605, 628
LpnPI	CCDG	9 cut(s)	105, 248, 270, 345, 397, 418, 456, 579, 687
Lsp1109I	GCAGC	1 cut(s)	758
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	2 cut(s)	378, 802
MaeIII	GTNAC	3 cut(s)	427, 568, 658
MalI	GATC	1 cut(s)	621
MboI	GATC	1 cut(s)	619
MboII	GAAGA	7 cut(s)	165, 290, 471, 543, 547, 795, 845
MflI	RGATCY	1 cut(s)	619
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	9 cut(s)	215, 577, 592, 637, 789, 812, 866, 871, 913
MseI	TTAA	2 cut(s)	636, 819
MspA1I	CMGCKG	1 cut(s)	665
MspI	CCGG	1 cut(s)	443
MvnI	CGCG	1 cut(s)	665
MwoI	GCNNNNNNNGC	4 cut(s)	458, 562, 746, 755
NdeII	GATC	1 cut(s)	619
NlaIII	CATG	1 cut(s)	394
NlaIV	GGNNCC	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	2 cut(s)	369, 799
PfeI	GAWTC	3 cut(s)	476, 538, 857
PkrI	GCNGC	2 cut(s)	460, 748
PmaCI	CACGTG	1 cut(s)	803
PmlI	CACGTG	1 cut(s)	803
Ppu21I	YACGTR	1 cut(s)	803
PsiI	TTATAA	1 cut(s)	503
PspCI	CACGTG	1 cut(s)	803
PspN4I	GGNNCC	1 cut(s)	367
PspPI	GGNCC	2 cut(s)	186, 696
PsuI	RGATCY	1 cut(s)	619
RsaI	GTAC	4 cut(s)	328, 346, 362, 825
RsaNI	GTAC	4 cut(s)	327, 345, 361, 824
SacII	CCGCGG	1 cut(s)	666
SaqAI	TTAA	2 cut(s)	636, 819
SatI	GCNGC	2 cut(s)	459, 747
Sau3AI	GATC	1 cut(s)	619
Sau96I	GGNCC	2 cut(s)	186, 696
SduI	GDGCHC	1 cut(s)	276
SetI	ASST	9 cut(s)	87, 244, 381, 387, 614, 633, 685, 698, 805
Sfr303I	CCGCGG	1 cut(s)	666
SgrBI	CCGCGG	1 cut(s)	666
SinI	GGWCC	2 cut(s)	186, 696
SmlI	CTYRAG	2 cut(s)	231, 623
SmoI	CTYRAG	2 cut(s)	231, 623
Sse9I	AATT	9 cut(s)	215, 577, 592, 637, 789, 812, 866, 871, 913
SsiI	CCGC	4 cut(s)	458, 663, 665, 699
SspMI	CTAG	1 cut(s)	473
StyI	CCWWGG	2 cut(s)	317, 679
TaaI	ACNGT	3 cut(s)	63, 370, 846
TaiI	ACGT	2 cut(s)	381, 805
TaqI	TCGA	2 cut(s)	354, 882
TasI	AATT	9 cut(s)	215, 577, 592, 637, 789, 812, 866, 871, 913
TauI	GCSGC	1 cut(s)	461
TfiI	GAWTC	3 cut(s)	476, 538, 857
Tru1I	TTAA	2 cut(s)	636, 819
Tru9I	TTAA	2 cut(s)	636, 819
TscAI	CASTG	1 cut(s)	264
TseI	GCWGC	1 cut(s)	746
TspDTI	ATGAA	2 cut(s)	264, 870
TspGWI	ACGGA	1 cut(s)	618
TspRI	CASTG	1 cut(s)	264
VpaK11BI	GGWCC	2 cut(s)	186, 696
XapI	RAATTY	3 cut(s)	592, 789, 871
XbaI	TCTAGA	1 cut(s)	472
XspI	CTAG	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.