AT4G09040

kDa ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004821
Physical Location & Seq
Reverse (-)
5794529 .. 5797420
2892 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G09040.2

Sequence Viewer

Length: 915 bp
ATGGCTCTTCTTCGTCTTCCTGGCATTTCCCTCCAAATTCTAGGTCACAAATCAAACCAGAAGAACCCTAATCCCAATGTTGCCTTCACCAATCACTCTCTCTCTTTATCTACTCCTTCACTATGTCGTCTCCATCGTCACGCGACGTTTCCAGACTCAATTCCAGCAAAATCCAGAAACCTCACTTCGTACTTCTCCACCACAACACAAGAGCCAGTCCTCGAATCTTCTTCTTCTTCTTCTTCAGCTCCTGAGGTAGTAGAAGAAGAGATTTCTAAAACCAGATTGATTGCTCAGAATGTTCCATGGACATCTACACCTGAAGATATTAGATCGTTGTTCGAGAAGTACGGGAGTGTTATCGACATTGAGATGTCTATGCATAAGAAGGAAAGAAATAGAGGTTTGGTGTTCATTGAAATGGCTTCTCCTGAAGAAGCTGCAACAGCTCTTAAATCTCTTGAATCGTGTGAATATGAGGGTCGTCGTTTGAAGGTAGACTATGCAAAGACCAAAAAGAAGAAGACATATGCGCCGCGTGAGACGCCTTCACCAGTGCCTACATTCAATTTGTTTGTTGCAAACTTGGCATTTGAAGCAAGGGCCAAGCATCTTAAGGAGTTCTTTGATGCAGACACTGGTAATGTTGTCTCCACTGAAGTTATATTCCATGAAAATCCAAGGAGGTCGAGTGGTTACGGGTTTGTCTCTTTCAAAACCAAGAAACAGGCCGAGGCAGCGCTTATTGAGTTCCAAGGAAAGGATTTTTTGGGAAGGCCAATCCGATTAGCTAAAAGCAAACAGTTTGTGAAGTTGCAAGCAAAAGAAGGGTTGCAGCCACCAGAGGAGGAAGCAGAGGAGGAACCATCTCAGTCTGAGACAATGACCCAAGAGCACGAAACTCCGGCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03018 map03013 map03015 map03018
Pfam Domains
Protein Families
RRM_1

Protein Analysis

304

Amino Acids

34.03

Weight (kDa)

7.11

Isoelectric Point (pI)

65.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 39 - 105 1.3e-12 RNA recognition motif
RRM_1 PF00076 131 - 202 2.9e-13 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 498
AccII CGCG 2 cut(s) 143, 538
AciI CCGC 1 cut(s) 536
AcsI RAATTY 1 cut(s) 36
AcuI CTGAAG 4 cut(s) 228, 342, 453, 678
AcyI GRCGYC 1 cut(s) 545
AfaI GTAC 2 cut(s) 191, 350
AfeI AGCGCT 1 cut(s) 741
AfiI CCNNNNNNNGG 1 cut(s) 760
AflII CTTAAG 1 cut(s) 614
AgsI TTSAA 6 cut(s) 419, 464, 493, 568, 596, 715
AjnI CCWGG 1 cut(s) 19
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 4 cut(s) 248, 440, 449, 791
AluI AGCT 4 cut(s) 248, 440, 449, 791
Alw21I GWGCWC 1 cut(s) 897
Alw26I GTCTC 5 cut(s) 134, 536, 655, 712, 872
AlwNI CAGNNNCTG 2 cut(s) 251, 638
Aor51HI AGCGCT 1 cut(s) 741
AoxI GGCC 3 cut(s) 603, 729, 776
ApeKI GCWGC 4 cut(s) 440, 737, 835, 908
ApoI RAATTY 1 cut(s) 36
ArsI GACNNNNNNTTYG 2 cut(s) 28, 60
AspLEI GCGC 2 cut(s) 535, 742
AspS9I GGNCC 1 cut(s) 603
AsuHPI GGTGA 2 cut(s) 79, 543
AxyI CCTNAGG 1 cut(s) 252
BbsI GAAGAC 2 cut(s) 8, 530
Bbv12I GWGCWC 1 cut(s) 897
BbvI GCAGC 4 cut(s) 427, 749, 847, 895
BccI CCATC 2 cut(s) 141, 874
BciT130I CCWGG 1 cut(s) 21
BcoDI GTCTC 5 cut(s) 134, 536, 655, 712, 872
BfaI CTAG 1 cut(s) 41
BfoI RGCGCY 1 cut(s) 743
BfrI CTTAAG 1 cut(s) 614
BisI GCNGC 5 cut(s) 441, 536, 738, 836, 909
BlsI GCNGC 5 cut(s) 442, 537, 739, 837, 910
Bme1390I CCNGG 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 603
BmiI GGNNCC 1 cut(s) 864
BmrFI CCNGG 1 cut(s) 21
BmsI GCATC 2 cut(s) 619, 619
BpiI GAAGAC 2 cut(s) 8, 530
BsaHI GRCGYC 1 cut(s) 545
BsaJI CCNNGG 4 cut(s) 305, 680, 732, 754
BsaXI ACNNNNNCTCC 2 cut(s) 676, 706
Bsc4I CCNNNNNNNGG 1 cut(s) 760
Bse1I ACTGG 3 cut(s) 215, 554, 643
Bse21I CCTNAGG 1 cut(s) 252
BseBI CCWGG 1 cut(s) 21
BseDI CCNNGG 4 cut(s) 305, 680, 732, 754
BseLI CCNNNNNNNGG 1 cut(s) 760
BseMII CTCAG 4 cut(s) 243, 308, 867, 884
BseNI ACTGG 3 cut(s) 215, 554, 643
BseRI GAGGAG 2 cut(s) 860, 872
BseXI GCAGC 4 cut(s) 427, 749, 847, 895
Bsh1236I CGCG 2 cut(s) 143, 538
BshFI GGCC 3 cut(s) 605, 731, 778
BsiHKAI GWGCWC 1 cut(s) 897
BsiSI CCGG 1 cut(s) 905
BslI CCNNNNNNNGG 1 cut(s) 760
BsmAI GTCTC 5 cut(s) 134, 536, 655, 712, 872
BsmBI CGTCTC 2 cut(s) 134, 536
BsnI GGCC 3 cut(s) 605, 731, 778
Bsp1286I GDGCHC 1 cut(s) 897
Bsp143I GATC 1 cut(s) 332
Bsp19I CCATGG 1 cut(s) 305
BspACI CCGC 1 cut(s) 536
BspANI GGCC 3 cut(s) 605, 731, 778
BspCNI CTCAG 4 cut(s) 244, 307, 868, 883
BspFNI CGCG 2 cut(s) 143, 538
BspLI GGNNCC 1 cut(s) 864
BspQI GCTCTTC 1 cut(s) 12
BspTI CTTAAG 1 cut(s) 614
BsrI ACTGG 3 cut(s) 215, 554, 643
BssECI CCNNGG 4 cut(s) 305, 680, 732, 754
BssMI GATC 1 cut(s) 332
BssNI GRCGYC 1 cut(s) 545
BssT1I CCWWGG 3 cut(s) 305, 680, 754
Bst2UI CCWGG 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 804
Bst6I CTCTTC 2 cut(s) 12, 261
BstACI GRCGYC 1 cut(s) 545
BstAFI CTTAAG 1 cut(s) 614
BstC8I GCNNGC 1 cut(s) 819
BstDEI CTNAG 4 cut(s) 252, 294, 870, 876
BstDSI CCRYGG 1 cut(s) 305
BstFNI CGCG 2 cut(s) 143, 538
BstH2I RGCGCY 1 cut(s) 743
BstHHI GCGC 2 cut(s) 535, 742
BstKTI GATC 1 cut(s) 335
BstMAI GTCTC 5 cut(s) 134, 536, 655, 712, 872
BstMBI GATC 1 cut(s) 332
BstMWI GCNNNNNNNGC 5 cut(s) 446, 544, 587, 596, 737
BstNI CCWGG 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 19
BstUI CGCG 2 cut(s) 143, 538
BstV1I GCAGC 4 cut(s) 427, 749, 847, 895
BstV2I GAAGAC 2 cut(s) 8, 530
Bsu36I CCTNAGG 1 cut(s) 252
BsuRI GGCC 3 cut(s) 605, 731, 778
BtgI CCRYGG 1 cut(s) 305
BtsIMutI CAGTG 3 cut(s) 561, 636, 654
Cac8I GCNNGC 1 cut(s) 819
CaiI CAGNNNCTG 2 cut(s) 251, 638
CfoI GCGC 2 cut(s) 535, 742
Cfr13I GGNCC 1 cut(s) 603
CseI GACGC 1 cut(s) 553
Csp6I GTAC 2 cut(s) 190, 349
CviAII CATG 2 cut(s) 306, 671
CviQI GTAC 2 cut(s) 190, 349
DdeI CTNAG 4 cut(s) 252, 294, 870, 876
DpnI GATC 1 cut(s) 334
DpnII GATC 1 cut(s) 332
Eam1104I CTCTTC 2 cut(s) 12, 261
EarI CTCTTC 2 cut(s) 12, 261
Eco130I CCWWGG 3 cut(s) 305, 680, 754
Eco47III AGCGCT 1 cut(s) 741
Eco57I CTGAAG 4 cut(s) 228, 342, 453, 678
Eco81I CCTNAGG 1 cut(s) 252
EcoRII CCWGG 1 cut(s) 19
EcoT14I CCWWGG 3 cut(s) 305, 680, 754
EcoT22I ATGCAT 1 cut(s) 384
ErhI CCWWGG 3 cut(s) 305, 680, 754
Esp3I CGTCTC 2 cut(s) 134, 536
FaeI CATG 2 cut(s) 309, 674
FalI AAGNNNNNCTT 2 cut(s) 608, 640
FatI CATG 2 cut(s) 305, 670
FauNDI CATATG 1 cut(s) 529
FblI GTMKAC 1 cut(s) 498
Fnu4HI GCNGC 5 cut(s) 441, 536, 738, 836, 909
Fsp4HI GCNGC 5 cut(s) 441, 536, 738, 836, 909
FspBI CTAG 1 cut(s) 41
GlaI GCGC 2 cut(s) 534, 741
GluI GCNGC 5 cut(s) 441, 536, 738, 836, 909
HaeII RGCGCY 1 cut(s) 743
HaeIII GGCC 3 cut(s) 605, 731, 778
HapII CCGG 1 cut(s) 905
HgaI GACGC 1 cut(s) 553
HhaI GCGC 2 cut(s) 535, 742
Hin1I GRCGYC 1 cut(s) 545
Hin1II CATG 2 cut(s) 309, 674
Hin6I GCGC 2 cut(s) 533, 740
HinP1I GCGC 2 cut(s) 533, 740
HinfI GANTC 3 cut(s) 155, 224, 464
HpaII CCGG 1 cut(s) 905
HphI GGTGA 2 cut(s) 79, 543
Hpy166II GTNNAC 1 cut(s) 499
Hpy188I TCNGA 3 cut(s) 297, 785, 877
Hpy188III TCNNGA 6 cut(s) 152, 174, 251, 343, 431, 461
Hpy8I GTNNAC 1 cut(s) 499
Hpy99I CGWCG 2 cut(s) 148, 489
HpyAV CCTTC 7 cut(s) 94, 126, 382, 487, 558, 768, 821
HpyCH4III ACNGT 1 cut(s) 804
HpyCH4IV ACGT 1 cut(s) 146
HpyCH4V TGCA 8 cut(s) 382, 443, 506, 581, 632, 817, 835, 911
HpyF10VI GCNNNNNNNGC 5 cut(s) 446, 544, 587, 596, 737
HpyF3I CTNAG 4 cut(s) 252, 294, 870, 876
HpySE526I ACGT 1 cut(s) 146
Hsp92I GRCGYC 1 cut(s) 545
Hsp92II CATG 2 cut(s) 309, 674
HspAI GCGC 2 cut(s) 533, 740
Kzo9I GATC 1 cut(s) 332
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 253
Lsp1109I GCAGC 4 cut(s) 427, 749, 847, 895
LweI GCATC 2 cut(s) 619, 619
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 146
MaeIII GTNAC 3 cut(s) 44, 137, 695
MalI GATC 1 cut(s) 334
MboI GATC 1 cut(s) 332
MhlI GDGCHC 1 cut(s) 897
MluCI AATT 3 cut(s) 36, 159, 568
MlyI GAGTC 1 cut(s) 149
Mph1103I ATGCAT 1 cut(s) 384
MseI TTAA 2 cut(s) 453, 615
MslI CAYNNNNRTG 2 cut(s) 371, 419
MspCI CTTAAG 1 cut(s) 614
MspI CCGG 1 cut(s) 905
MspR9I CCNGG 1 cut(s) 21
MvaI CCWGG 1 cut(s) 21
MvnI CGCG 2 cut(s) 143, 538
MwoI GCNNNNNNNGC 5 cut(s) 446, 544, 587, 596, 737
NcoI CCATGG 1 cut(s) 305
NdeI CATATG 1 cut(s) 529
NdeII GATC 1 cut(s) 332
NlaIII CATG 2 cut(s) 309, 674
NlaIV GGNNCC 1 cut(s) 864
NmeAIII GCCGAG 1 cut(s) 757
NmuCI GTSAC 2 cut(s) 44, 137
NsiI ATGCAT 1 cut(s) 384
PciSI GCTCTTC 1 cut(s) 12
PcsI WCGNNNNNNNCGW 1 cut(s) 133
PfeI GAWTC 2 cut(s) 224, 464
PkrI GCNGC 5 cut(s) 442, 537, 739, 837, 910
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 19
PspGI CCWGG 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 864
PspPI GGNCC 1 cut(s) 603
PstNI CAGNNNCTG 2 cut(s) 251, 638
RsaI GTAC 2 cut(s) 191, 350
RsaNI GTAC 2 cut(s) 190, 349
RseI CAYNNNNRTG 2 cut(s) 371, 419
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 2 cut(s) 453, 615
SatI GCNGC 5 cut(s) 441, 536, 738, 836, 909
Sau3AI GATC 1 cut(s) 332
Sau96I GGNCC 1 cut(s) 603
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 21
SduI GDGCHC 1 cut(s) 897
SfaNI GCATC 2 cut(s) 619, 619
SmiMI CAYNNNNRTG 2 cut(s) 371, 419
SmlI CTYRAG 1 cut(s) 614
SmoI CTYRAG 1 cut(s) 614
Sse9I AATT 3 cut(s) 36, 159, 568
SsiI CCGC 1 cut(s) 536
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 19
StyI CCWWGG 3 cut(s) 305, 680, 754
TaaI ACNGT 1 cut(s) 804
TaiI ACGT 1 cut(s) 149
TaqI TCGA 4 cut(s) 222, 342, 363, 689
TasI AATT 3 cut(s) 36, 159, 568
TauI GCSGC 1 cut(s) 538
TfiI GAWTC 2 cut(s) 224, 464
Tru1I TTAA 2 cut(s) 453, 615
Tru9I TTAA 2 cut(s) 453, 615
TscAI CASTG 3 cut(s) 561, 643, 661
TseFI GTSAC 2 cut(s) 44, 137
TseI GCWGC 4 cut(s) 440, 737, 835, 908
Tsp45I GTSAC 2 cut(s) 44, 137
TspDTI ATGAA 2 cut(s) 403, 687
TspRI CASTG 3 cut(s) 561, 643, 661
Vha464I CTTAAG 1 cut(s) 614
XapI RAATTY 1 cut(s) 36
XmiI GTMKAC 1 cut(s) 498
XspI CTAG 1 cut(s) 41
Zsp2I ATGCAT 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.