Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0004821

Physical Location & Seq

Genomic Coordinates Reverse (-)

23919780 .. 23921217

Gene Structure 1438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1189600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGAGGGTCGTGTCATAAAGATGGCTTATGCCAGGCCAAAAAAGACGAAGATTCCTCCCCCTTCTTCGGAACCCAAGCCAATAACTTTCAATTTGTATGTGGAAAATCTGCCATATGAAGCAAGATCTAAAGATCTCAAGGATATGGATTTGTGGGCTTCAAAACCAAGGCCGAGGCTGAGGCAGCTCACACGGGAAGCTGCTTATGGGAAGACGAATTCGTGTGGCACGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

79

Amino Acids

9.02

Weight (kDa)

9.94

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09040 AT4G09040
fragaria_vesca	FvH4_5g36390 FvH4_5g36390
malus_domestica	MD08G1189600.v1.1 MD08G1189900.v1.1 MD15G1377200.v1.1
prunus_persica	Prupe.1G523800_v2.0.a1 Prupe.1G523800_v2.0.a1
pyrus_communis	pycom08g16310 pycom15g33680 pycom15g33730
rosa_chinensis	RchiOBHm_Chr7g0238361
rosa_laevigata	RLG00000000915 RLG00000000916 RLG00000000917
rosa_multiflora	Rmu_sc0001371.1_g000023
rosa_roxburghii	Rroxscaffold_3G00223080
rosa_rugosa	Rorug07G0311900 Rorug07G0312300
rosa_samantha	Rh7AG467000 Rh7BG437800 Rh7CG484700 Rh7CG485000 Rh7CG485100 Rh7DG453100 Rh7DG453400 Rh7DG453500
rosa_wichuraiana	Rw7G038680 Rw7G038720 Rw7G038790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	217
AcvI	CACGTG	1 cut(s)	231
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	2 cut(s)	91, 162
AjnI	CCWGG	1 cut(s)	32
AluBI	AGCT	2 cut(s)	187, 200
AluI	AGCT	2 cut(s)	187, 200
AoxI	GGCC	2 cut(s)	35, 170
ApeKI	GCWGC	2 cut(s)	184, 200
ApoI	RAATTY	1 cut(s)	217
BbrPI	CACGTG	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	218
BbvCI	CCTCAGC	1 cut(s)	179
BbvI	GCAGC	2 cut(s)	187, 196
BccI	CCATC	1 cut(s)	16
BciT130I	CCWGG	1 cut(s)	34
BglII	AGATCT	2 cut(s)	125, 133
BisI	GCNGC	2 cut(s)	185, 201
BlsI	GCNGC	2 cut(s)	186, 202
Bme1390I	CCNGG	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	34
BpiI	GAAGAC	1 cut(s)	218
Bpu10I	CCTNAGC	1 cut(s)	179
BpuEI	CTTGAG	1 cut(s)	122
BsaAI	YACGTR	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	167, 173
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	34
BseDI	CCNNGG	2 cut(s)	167, 173
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	170
BseXI	GCAGC	2 cut(s)	187, 196
BshFI	GGCC	2 cut(s)	37, 172
BslI	CCNNNNNNNGG	1 cut(s)	67
BsnI	GGCC	2 cut(s)	37, 172
Bsp143I	GATC	2 cut(s)	125, 133
BspANI	GGCC	2 cut(s)	37, 172
BspCNI	CTCAG	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	72
BssECI	CCNNGG	2 cut(s)	167, 173
BssMI	GATC	2 cut(s)	125, 133
BssT1I	CCWWGG	1 cut(s)	167
Bst2UI	CCWGG	1 cut(s)	34
BstBAI	YACGTR	1 cut(s)	231
BstDEI	CTNAG	1 cut(s)	179
BstKTI	GATC	2 cut(s)	128, 136
BstMBI	GATC	2 cut(s)	125, 133
BstMWI	GCNNNNNNNGC	1 cut(s)	184
BstNI	CCWGG	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	32
BstV1I	GCAGC	2 cut(s)	187, 196
BstV2I	GAAGAC	1 cut(s)	218
BstX2I	RGATCY	2 cut(s)	125, 133
BstYI	RGATCY	2 cut(s)	125, 133
BsuRI	GGCC	2 cut(s)	37, 172
CviJI	RGCY	8 cut(s)	26, 37, 79, 158, 172, 178, 187, 200
CviKI_1	RGCY	8 cut(s)	26, 37, 79, 158, 172, 178, 187, 200
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	2 cut(s)	127, 135
DpnII	GATC	2 cut(s)	125, 133
Eco130I	CCWWGG	1 cut(s)	167
Eco72I	CACGTG	1 cut(s)	231
EcoRI	GAATTC	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	167
FaiI	YATR	7 cut(s)	17, 30, 99, 115, 117, 146, 207
FauNDI	CATATG	1 cut(s)	115
Fnu4HI	GCNGC	2 cut(s)	185, 201
Fsp4HI	GCNGC	2 cut(s)	185, 201
GluI	GCNGC	2 cut(s)	185, 201
HaeIII	GGCC	2 cut(s)	37, 172
HinfI	GANTC	1 cut(s)	52
Hpy188I	TCNGA	1 cut(s)	70
HpyAV	CCTTC	1 cut(s)	72
HpyCH4IV	ACGT	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	184
HpyF3I	CTNAG	1 cut(s)	179
HpySE526I	ACGT	1 cut(s)	230
Kzo9I	GATC	2 cut(s)	125, 133
LpnPI	CCDG	2 cut(s)	19, 46
Lsp1109I	GCAGC	2 cut(s)	187, 196
MaeII	ACGT	1 cut(s)	230
MalI	GATC	2 cut(s)	127, 135
MboI	GATC	2 cut(s)	125, 133
MboII	GAAGA	3 cut(s)	57, 61, 223
MflI	RGATCY	2 cut(s)	125, 133
MluCI	AATT	2 cut(s)	91, 217
MnlI	CCTC	3 cut(s)	66, 168, 174
MslI	CAYNNNNRTG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	1 cut(s)	184
NdeI	CATATG	1 cut(s)	115
NdeII	GATC	2 cut(s)	125, 133
NlaIV	GGNNCC	1 cut(s)	72
NmeAIII	GCCGAG	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	186, 202
PmaCI	CACGTG	1 cut(s)	231
PmlI	CACGTG	1 cut(s)	231
Ppu21I	YACGTR	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	32
PspCI	CACGTG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	1 cut(s)	72
PsuI	RGATCY	2 cut(s)	125, 133
RseI	CAYNNNNRTG	1 cut(s)	20
SatI	GCNGC	2 cut(s)	185, 201
Sau3AI	GATC	2 cut(s)	125, 133
ScrFI	CCNGG	1 cut(s)	34
SetI	ASST	3 cut(s)	189, 202, 233
SmiMI	CAYNNNNRTG	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	2 cut(s)	91, 217
StyD4I	CCNGG	1 cut(s)	32
StyI	CCWWGG	1 cut(s)	167
TaiI	ACGT	1 cut(s)	233
TasI	AATT	2 cut(s)	91, 217
TfiI	GAWTC	1 cut(s)	52
TseI	GCWGC	2 cut(s)	184, 200
TspDTI	ATGAA	1 cut(s)	132
XapI	RAATTY	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.