Rroxscaffold_3G00223080

kDa ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004821
Physical Location & Seq
Reverse (-)
6216811 .. 6220015
3205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00223080.1

Sequence Viewer

Length: 807 bp
ATGGCTTTGCTTCGTCAACCTCTAGCACCTCTACCTTGTCTGCAAAACCCACACCACCTCCCCAAACACAAACCCACAACTCTCTCTGTTTCCGGGCCTCTTTTCTCCCTCTCTCTTTCCTTATCTCACACCCACCACACTCCCACCTCTTCAATCAGGACCAAAAAGCTTGAATCTTTCGTGCTCCAATTCTCCTCCACAGCCCAGGAAGAAGCCATTGGAGAAAACCCAGTTCTTGTGGAGCCAGAAACTGAAGTGTTCTCTGACACAAGATTGCTTGCCCAGAATGTGCCTTGGACTTGTACCCCTGAAGACATTAGGACCATGTTCGAAAAGTACGGCACCGTCGTCGACGTCGAGGAAATGGACGGTCGTATAATAAGGATGGCTTATGCCAAGCCAAAAAAGAAGAAGATTCCCCCTCCTATGCCATCCAAGGACATAACATTTAATTTGTATGTGGAAAATTTGTCATACGAAGTAAGGGCTAAAGATCTCAAGGAGTTTTTTACTTCAGAGGGTACTGATATTGTTAACGCAGAGGTGGTATTCGAAGGTAATCCTAGAAGGTCCGCTGGATATGCATTTGTGAGCTTCAAGTCCAAGAAAGAGGCTGAGGCTGCCCTTGCTACTTTCCACGGGAAGTTGTTTATGGGAAGAAAAATTCGTGTGGCACGCAGTAAACAATTTGTTAAAGTACCAACAGTTAAAGAACCAGCAGTAGAGAGTTCAGAGTCGGGTGATAATGCTACTGAACTGAGTTCTACTTCAGAGCAAGTGATACCAGATGACAGTGATAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03018 map03013 map03015 map03018
Pfam Domains
Protein Families
RRM_1

Protein Analysis

268

Amino Acids

29.91

Weight (kDa)

7.07

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 152 - 223 1e-15 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 357
AccB1I GGYRCC 1 cut(s) 341
AccI GTMKAC 1 cut(s) 351
AciI CCGC 1 cut(s) 573
AcsI RAATTY 2 cut(s) 466, 663
AcuI CTGAAG 4 cut(s) 273, 330, 498, 753
AcyI GRCGYC 1 cut(s) 354
AfaI GTAC 4 cut(s) 304, 338, 523, 699
AgsI TTSAA 3 cut(s) 153, 173, 598
AjnI CCWGG 1 cut(s) 204
AjuI GAANNNNNNNTTGG 2 cut(s) 201, 233
AluBI AGCT 2 cut(s) 169, 594
AluI AGCT 2 cut(s) 169, 594
Alw21I GWGCWC 1 cut(s) 186
AlwNI CAGNNNCTG 1 cut(s) 251
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 1 cut(s) 620
ApoI RAATTY 2 cut(s) 466, 663
AspS9I GGNCC 4 cut(s) 95, 159, 321, 570
AsuC2I CCSGG 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 752
AsuII TTCGAA 2 cut(s) 330, 552
AvaII GGWCC 3 cut(s) 159, 321, 570
BanI GGYRCC 1 cut(s) 341
BbsI GAAGAC 1 cut(s) 318
Bbv12I GWGCWC 1 cut(s) 186
BbvCI CCTCAGC 1 cut(s) 615
BbvI GCAGC 1 cut(s) 607
BccI CCATC 2 cut(s) 379, 439
BceAI ACGGC 1 cut(s) 355
BcgI CGANNNNNNTGC 2 cut(s) 331, 365
BciT130I CCWGG 1 cut(s) 206
BcnI CCSGG 1 cut(s) 94
BfaI CTAG 2 cut(s) 23, 564
BglII AGATCT 1 cut(s) 493
BisI GCNGC 1 cut(s) 621
BlsI GCNGC 1 cut(s) 622
Bme1390I CCNGG 2 cut(s) 94, 206
Bme18I GGWCC 3 cut(s) 159, 321, 570
BmgT120I GGNCC 4 cut(s) 95, 159, 321, 570
BmiI GGNNCC 2 cut(s) 243, 343
BmrFI CCNGG 2 cut(s) 94, 206
BmrI ACTGGG 1 cut(s) 224
BmuI ACTGGG 1 cut(s) 224
BpiI GAAGAC 1 cut(s) 318
Bpu10I CCTNAGC 1 cut(s) 615
Bpu14I TTCGAA 2 cut(s) 330, 552
BpuEI CTTGAG 1 cut(s) 482
BpuMI CCSGG 1 cut(s) 94
BsaHI GRCGYC 1 cut(s) 354
BsaJI CCNNGG 4 cut(s) 204, 293, 435, 637
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bse1I ACTGG 1 cut(s) 230
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 4 cut(s) 204, 293, 435, 637
BseGI GGATG 2 cut(s) 390, 431
BseMII CTCAG 2 cut(s) 606, 749
BseNI ACTGG 1 cut(s) 230
BseRI GAGGAG 1 cut(s) 184
BseXI GCAGC 1 cut(s) 607
Bsh1285I CGRYCG 1 cut(s) 373
BshFI GGCC 1 cut(s) 97
BshNI GGYRCC 1 cut(s) 341
BsiEI CGRYCG 1 cut(s) 373
BsiHKAI GWGCWC 1 cut(s) 186
BsiSI CCGG 1 cut(s) 93
BsnI GGCC 1 cut(s) 97
Bsp119I TTCGAA 2 cut(s) 330, 552
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 1 cut(s) 493
BspACI CCGC 1 cut(s) 573
BspANI GGCC 1 cut(s) 97
BspCNI CTCAG 2 cut(s) 607, 750
BspLI GGNNCC 2 cut(s) 243, 343
BspT104I TTCGAA 2 cut(s) 330, 552
BspT107I GGYRCC 1 cut(s) 341
BsrI ACTGG 1 cut(s) 230
BssECI CCNNGG 4 cut(s) 204, 293, 435, 637
BssMI GATC 1 cut(s) 493
BssNI GRCGYC 1 cut(s) 354
BssT1I CCWWGG 2 cut(s) 293, 435
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 4 cut(s) 346, 371, 706, 794
Bst6I CTCTTC 1 cut(s) 154
BstACI GRCGYC 1 cut(s) 354
BstBI TTCGAA 2 cut(s) 330, 552
BstC8I GCNNGC 2 cut(s) 279, 676
BstDEI CTNAG 2 cut(s) 615, 758
BstDSI CCRYGG 1 cut(s) 637
BstF5I GGATG 2 cut(s) 390, 431
BstKTI GATC 1 cut(s) 496
BstMBI GATC 1 cut(s) 493
BstMCI CGRYCG 1 cut(s) 373
BstMWI GCNNNNNNNGC 3 cut(s) 581, 620, 626
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 2 cut(s) 92, 204
BstV1I GCAGC 1 cut(s) 607
BstV2I GAAGAC 1 cut(s) 318
BstX2I RGATCY 1 cut(s) 493
BstYI RGATCY 1 cut(s) 493
BsuRI GGCC 1 cut(s) 97
BtgI CCRYGG 1 cut(s) 637
BtsCI GGATG 2 cut(s) 390, 431
BtsIMutI CAGTG 1 cut(s) 799
Cac8I GCNNGC 2 cut(s) 279, 676
CaiI CAGNNNCTG 1 cut(s) 251
Cfr13I GGNCC 4 cut(s) 95, 159, 321, 570
Csp6I GTAC 4 cut(s) 303, 337, 522, 698
CviAII CATG 1 cut(s) 325
CviQI GTAC 4 cut(s) 303, 337, 522, 698
DdeI CTNAG 2 cut(s) 615, 758
DpnI GATC 1 cut(s) 495
DpnII GATC 1 cut(s) 493
Eam1104I CTCTTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 154
Eco130I CCWWGG 2 cut(s) 293, 435
Eco47I GGWCC 3 cut(s) 159, 321, 570
Eco57I CTGAAG 4 cut(s) 273, 330, 498, 753
EcoRII CCWGG 1 cut(s) 204
EcoT14I CCWWGG 2 cut(s) 293, 435
EcoT22I ATGCAT 1 cut(s) 586
ErhI CCWWGG 2 cut(s) 293, 435
FaeI CATG 1 cut(s) 328
FaiI YATR 9 cut(s) 326, 377, 393, 428, 443, 459, 475, 582, 653
FalI AAGNNNNNCTT 2 cut(s) 373, 405
FatI CATG 1 cut(s) 324
FblI GTMKAC 1 cut(s) 351
Fnu4HI GCNGC 1 cut(s) 621
FokI GGATG 2 cut(s) 397, 418
Fsp4HI GCNGC 1 cut(s) 621
FspBI CTAG 2 cut(s) 23, 564
GluI GCNGC 1 cut(s) 621
HaeIII GGCC 1 cut(s) 97
HapII CCGG 1 cut(s) 93
Hin1I GRCGYC 1 cut(s) 354
Hin1II CATG 1 cut(s) 328
HincII GTYRAC 3 cut(s) 17, 352, 535
HindII GTYRAC 3 cut(s) 17, 352, 535
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 3 cut(s) 173, 415, 734
HpaI GTTAAC 1 cut(s) 535
HpaII CCGG 1 cut(s) 93
HphI GGTGA 1 cut(s) 752
Hpy166II GTNNAC 4 cut(s) 17, 352, 535, 683
Hpy188I TCNGA 4 cut(s) 265, 517, 733, 772
Hpy188III TCNNGA 1 cut(s) 157
Hpy8I GTNNAC 4 cut(s) 17, 352, 535, 683
Hpy99I CGWCG 4 cut(s) 350, 353, 356, 359
HpyAV CCTTC 2 cut(s) 548, 561
HpyCH4III ACNGT 4 cut(s) 346, 371, 706, 794
HpyCH4IV ACGT 1 cut(s) 354
HpyCH4V TGCA 2 cut(s) 43, 584
HpyF10VI GCNNNNNNNGC 3 cut(s) 581, 620, 626
HpyF3I CTNAG 2 cut(s) 615, 758
HpySE526I ACGT 1 cut(s) 354
Hsp92I GRCGYC 1 cut(s) 354
Hsp92II CATG 1 cut(s) 328
KspAI GTTAAC 1 cut(s) 535
Kzo9I GATC 1 cut(s) 493
LmnI GCTCC 2 cut(s) 189, 241
Lsp1109I GCAGC 1 cut(s) 607
MaeI CTAG 2 cut(s) 23, 564
MaeII ACGT 1 cut(s) 354
MalI GATC 1 cut(s) 495
MboI GATC 1 cut(s) 493
MboII GAAGA 6 cut(s) 141, 221, 323, 421, 424, 669
MflI RGATCY 1 cut(s) 493
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 5 cut(s) 188, 451, 466, 663, 686
MlyI GAGTC 1 cut(s) 743
Mph1103I ATGCAT 1 cut(s) 586
MseI TTAA 4 cut(s) 450, 534, 693, 708
MspA1I CMGCKG 1 cut(s) 575
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 2 cut(s) 94, 206
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 3 cut(s) 581, 620, 626
NciI CCSGG 1 cut(s) 94
NdeII GATC 1 cut(s) 493
NlaIII CATG 1 cut(s) 328
NlaIV GGNNCC 2 cut(s) 243, 343
NsiI ATGCAT 1 cut(s) 586
NspV TTCGAA 2 cut(s) 330, 552
PcsI WCGNNNNNNNCGW 2 cut(s) 345, 354
PfeI GAWTC 2 cut(s) 173, 415
PkrI GCNGC 1 cut(s) 622
PleI GAGTC 1 cut(s) 742
PpsI GAGTC 1 cut(s) 742
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 2 cut(s) 243, 343
PspPI GGNCC 4 cut(s) 95, 159, 321, 570
PstNI CAGNNNCTG 1 cut(s) 251
PsuI RGATCY 1 cut(s) 493
RsaI GTAC 4 cut(s) 304, 338, 523, 699
RsaNI GTAC 4 cut(s) 303, 337, 522, 698
SalI GTCGAC 1 cut(s) 350
SaqAI TTAA 4 cut(s) 450, 534, 693, 708
SatI GCNGC 1 cut(s) 621
Sau3AI GATC 1 cut(s) 493
Sau96I GGNCC 4 cut(s) 95, 159, 321, 570
SchI GAGTC 1 cut(s) 743
ScrFI CCNGG 2 cut(s) 94, 206
SduI GDGCHC 1 cut(s) 186
SfuI TTCGAA 2 cut(s) 330, 552
SgrDI CGTCGACG 1 cut(s) 350
SinI GGWCC 3 cut(s) 159, 321, 570
SmlI CTYRAG 1 cut(s) 497
SmoI CTYRAG 1 cut(s) 497
Sse9I AATT 5 cut(s) 188, 451, 466, 663, 686
SsiI CCGC 1 cut(s) 573
SspMI CTAG 2 cut(s) 23, 564
StyD4I CCNGG 2 cut(s) 92, 204
StyI CCWWGG 2 cut(s) 293, 435
TaaI ACNGT 4 cut(s) 346, 371, 706, 794
TaiI ACGT 1 cut(s) 357
TaqI TCGA 4 cut(s) 330, 351, 357, 552
TasI AATT 5 cut(s) 188, 451, 466, 663, 686
TfiI GAWTC 2 cut(s) 173, 415
Tru1I TTAA 4 cut(s) 450, 534, 693, 708
Tru9I TTAA 4 cut(s) 450, 534, 693, 708
TscAI CASTG 1 cut(s) 799
TseI GCWGC 1 cut(s) 620
TspRI CASTG 1 cut(s) 799
VpaK11BI GGWCC 3 cut(s) 159, 321, 570
XapI RAATTY 2 cut(s) 466, 663
XmiI GTMKAC 1 cut(s) 351
XspI CTAG 2 cut(s) 23, 564
ZraI GACGTC 1 cut(s) 355
Zsp2I ATGCAT 1 cut(s) 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.