Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004821

Physical Location & Seq

Genomic Coordinates Reverse (-)

46154900 .. 46157082

Gene Structure 2183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1377200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCTTTACTTCGTCATCTCTCTTTCCCCACTGAACAAGTTCTCCCTCTCACACCTCCCCTCTCTCTCCAAAACCCACGACGCCTCTCCAAGCACACTCCGACCACTCGTTCTCTCTCCACCTCTCTTTCCTCCCCCTCTCTCTCTCCCCCAAACCCACTCGTTCCTCCTCCTTCAGGGCCAAAAAGCTCGGGAATTTCGTCCTTCAATTCTCCGCCGCCGCCCAAGACCAAGCTCTCGACGCAACCCCAGTCCTCGAGCGGAGCCCATAGAGTTCTCCAACACAAGACTGCTTGCCAGAATGTTCCTTGGCATTGCATCCCGGAAGACATCCATCTGTGTTCGAGAAGTACGGCACCGTCGTCGACCTTGAGGAACAGGGGTTTGGCATTTGTAACAATGGGATCGCCCGAGGAGGCTCGTACGGCTCTGGAAATGGAGGGTCGTGTCATAAACATGGCTTATGCCAGGCCGAAAAAGATGAAGATTCCTCCCCCTTCTTCACAACCCAAGCCATTAACTTTCAATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

178

Amino Acids

19.21

Weight (kDa)

10.74

Isoelectric Point (pI)

83.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09040 AT4G09040
fragaria_vesca	FvH4_5g36390 FvH4_5g36390
malus_domestica	MD08G1189600.v1.1 MD08G1189900.v1.1 MD15G1377200.v1.1
prunus_persica	Prupe.1G523800_v2.0.a1 Prupe.1G523800_v2.0.a1
pyrus_communis	pycom08g16310 pycom15g33680 pycom15g33730
rosa_chinensis	RchiOBHm_Chr7g0238361
rosa_laevigata	RLG00000000915 RLG00000000916 RLG00000000917
rosa_multiflora	Rmu_sc0001371.1_g000023
rosa_roxburghii	Rroxscaffold_3G00223080
rosa_rugosa	Rorug07G0311900 Rorug07G0312300
rosa_samantha	Rh7AG467000 Rh7BG437800 Rh7CG484700 Rh7CG485000 Rh7CG485100 Rh7DG453100 Rh7DG453400 Rh7DG453500
rosa_wichuraiana	Rw7G038680 Rw7G038720 Rw7G038790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	355
AccBSI	CCGCTC	1 cut(s)	261
AccI	GTMKAC	1 cut(s)	365
AciI	CCGC	4 cut(s)	215, 218, 221, 261
AclWI	GGATC	1 cut(s)	412
AcsI	RAATTY	1 cut(s)	195
AcuI	CTGAAG	1 cut(s)	159
AcyI	GRCGYC	1 cut(s)	82
AfaI	GTAC	2 cut(s)	352, 424
AfiI	CCNNNNNNNGG	1 cut(s)	176
AgsI	TTSAA	2 cut(s)	208, 526
AjnI	CCWGG	1 cut(s)	467
AjuI	GAANNNNNNNTTGG	2 cut(s)	368, 400
AloI	GAACNNNNNNTCC	2 cut(s)	27, 59
AluBI	AGCT	2 cut(s)	189, 235
AluI	AGCT	2 cut(s)	189, 235
AlwI	GGATC	1 cut(s)	412
Ama87I	CYCGRG	3 cut(s)	190, 256, 410
AoxI	GGCC	2 cut(s)	179, 470
ApoI	RAATTY	1 cut(s)	195
Asp700I	GAANNNNTTC	1 cut(s)	39
AspS9I	GGNCC	1 cut(s)	179
AsuC2I	CCSGG	1 cut(s)	323
AvaI	CYCGRG	3 cut(s)	190, 256, 410
BanI	GGYRCC	1 cut(s)	355
BanII	GRGCYC	1 cut(s)	268
BbsI	GAAGAC	1 cut(s)	333
BccI	CCATC	1 cut(s)	342
BceAI	ACGGC	2 cut(s)	369, 441
BcgI	CGANNNNNNTGC	2 cut(s)	345, 379
BciT130I	CCWGG	1 cut(s)	469
BcnI	CCSGG	1 cut(s)	323
BisI	GCNGC	2 cut(s)	218, 221
BlsI	GCNGC	2 cut(s)	219, 222
Bme1390I	CCNGG	2 cut(s)	323, 469
BmeT110I	CYCGRG	3 cut(s)	190, 256, 410
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	2 cut(s)	265, 357
BmrFI	CCNGG	2 cut(s)	323, 469
BmrI	ACTGGG	1 cut(s)	244
BmsI	GCATC	1 cut(s)	327
BmuI	ACTGGG	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	391
BpuMI	CCSGG	1 cut(s)	323
BsaHI	GRCGYC	1 cut(s)	82
BsaJI	CCNNGG	2 cut(s)	308, 411
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse1I	ACTGG	1 cut(s)	250
Bse3DI	GCAATG	1 cut(s)	313
BseBI	CCWGG	1 cut(s)	469
BseDI	CCNNGG	2 cut(s)	308, 411
BseGI	GGATG	2 cut(s)	318, 330
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMI	GCAATG	1 cut(s)	313
BseNI	ACTGG	1 cut(s)	250
BseRI	GAGGAG	2 cut(s)	159, 428
BshFI	GGCC	2 cut(s)	181, 472
BshNI	GGYRCC	1 cut(s)	355
BsiHKCI	CYCGRG	3 cut(s)	190, 256, 410
BsiSI	CCGG	1 cut(s)	323
BsiWI	CGTACG	1 cut(s)	422
BslI	CCNNNNNNNGG	1 cut(s)	176
BsnI	GGCC	2 cut(s)	181, 472
BsoBI	CYCGRG	3 cut(s)	190, 256, 410
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp143I	GATC	1 cut(s)	404
BspACI	CCGC	4 cut(s)	215, 218, 221, 261
BspANI	GGCC	2 cut(s)	181, 472
BspLI	GGNNCC	2 cut(s)	265, 357
BspPI	GGATC	1 cut(s)	412
BspT107I	GGYRCC	1 cut(s)	355
BsrBI	CCGCTC	1 cut(s)	261
BsrDI	GCAATG	1 cut(s)	313
BsrI	ACTGG	1 cut(s)	250
BssECI	CCNNGG	2 cut(s)	308, 411
BssMI	GATC	1 cut(s)	404
BssNI	GRCGYC	1 cut(s)	82
BssT1I	CCWWGG	1 cut(s)	308
Bst2UI	CCWGG	1 cut(s)	469
Bst4CI	ACNGT	1 cut(s)	360
BstACI	GRCGYC	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	295
BstENI	CCTNNNNNAGG	1 cut(s)	174
BstF5I	GGATG	2 cut(s)	318, 330
BstKTI	GATC	1 cut(s)	407
BstMBI	GATC	1 cut(s)	404
BstMWI	GCNNNNNNNGC	2 cut(s)	241, 425
BstNI	CCWGG	1 cut(s)	469
BstSCI	CCNGG	2 cut(s)	321, 467
BstV2I	GAAGAC	1 cut(s)	333
BsuRI	GGCC	2 cut(s)	181, 472
BtsCI	GGATG	2 cut(s)	318, 330
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	295
Cfr13I	GGNCC	1 cut(s)	179
CseI	GACGC	2 cut(s)	90, 250
Csp6I	GTAC	2 cut(s)	351, 423
CviAII	CATG	1 cut(s)	457
CviQI	GTAC	2 cut(s)	351, 423
DpnI	GATC	1 cut(s)	406
DpnII	GATC	1 cut(s)	404
EciI	GGCGGA	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	308
Eco24I	GRGCYC	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	159
Eco88I	CYCGRG	3 cut(s)	190, 256, 410
EcoNI	CCTNNNNNAGG	1 cut(s)	174
EcoRII	CCWGG	1 cut(s)	467
EcoT14I	CCWWGG	1 cut(s)	308
EcoT38I	GRGCYC	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	308
FaeI	CATG	1 cut(s)	460
FaiI	YATR	5 cut(s)	270, 452, 458, 465, 530
FatI	CATG	1 cut(s)	456
FblI	GTMKAC	1 cut(s)	365
Fnu4HI	GCNGC	2 cut(s)	218, 221
FokI	GGATG	2 cut(s)	305, 317
FriOI	GRGCYC	1 cut(s)	268
Fsp4HI	GCNGC	2 cut(s)	218, 221
GluI	GCNGC	2 cut(s)	218, 221
HaeIII	GGCC	2 cut(s)	181, 472
HapII	CCGG	1 cut(s)	323
HgaI	GACGC	2 cut(s)	90, 250
Hin1I	GRCGYC	1 cut(s)	82
Hin1II	CATG	1 cut(s)	460
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HinfI	GANTC	1 cut(s)	487
HpaII	CCGG	1 cut(s)	323
Hpy166II	GTNNAC	1 cut(s)	366
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	4 cut(s)	192, 238, 345, 431
Hpy8I	GTNNAC	1 cut(s)	366
Hpy99I	CGWCG	4 cut(s)	84, 244, 364, 367
HpyAV	CCTTC	3 cut(s)	183, 214, 507
HpyCH4III	ACNGT	1 cut(s)	360
HpyCH4V	TGCA	1 cut(s)	318
HpyF10VI	GCNNNNNNNGC	2 cut(s)	241, 425
Hsp92I	GRCGYC	1 cut(s)	82
Hsp92II	CATG	1 cut(s)	460
Kzo9I	GATC	1 cut(s)	404
LmnI	GCTCC	1 cut(s)	263
LpnPI	CCDG	8 cut(s)	162, 263, 311, 336, 364, 416, 454, 481
LweI	GCATC	1 cut(s)	327
MaeIII	GTNAC	1 cut(s)	394
MalI	GATC	1 cut(s)	406
MbiI	CCGCTC	1 cut(s)	261
MboI	GATC	1 cut(s)	404
MboII	GAAGA	3 cut(s)	338, 492, 496
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	2 cut(s)	195, 208
MmeI	TCCRAC	2 cut(s)	125, 304
MroXI	GAANNNNTTC	1 cut(s)	39
MseI	TTAA	1 cut(s)	518
MslI	CAYNNNNRTG	1 cut(s)	455
MspI	CCGG	1 cut(s)	323
MspR9I	CCNGG	2 cut(s)	323, 469
MvaI	CCWGG	1 cut(s)	469
MwoI	GCNNNNNNNGC	2 cut(s)	241, 425
NciI	CCSGG	1 cut(s)	323
NdeII	GATC	1 cut(s)	404
NlaIII	CATG	1 cut(s)	460
NlaIV	GGNNCC	2 cut(s)	265, 357
PaeR7I	CTCGAG	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	2 cut(s)	197, 359
PdmI	GAANNNNTTC	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	487
Pfl23II	CGTACG	1 cut(s)	422
PfoI	TCCNGGA	1 cut(s)	321
PkrI	GCNGC	2 cut(s)	219, 222
Psp6I	CCWGG	1 cut(s)	467
PspGI	CCWGG	1 cut(s)	467
PspLI	CGTACG	1 cut(s)	422
PspN4I	GGNNCC	2 cut(s)	265, 357
PspPI	GGNCC	1 cut(s)	179
PspXI	VCTCGAGB	1 cut(s)	256
RsaI	GTAC	2 cut(s)	352, 424
RsaNI	GTAC	2 cut(s)	351, 423
RseI	CAYNNNNRTG	1 cut(s)	455
SalI	GTCGAC	1 cut(s)	364
SaqAI	TTAA	1 cut(s)	518
SatI	GCNGC	2 cut(s)	218, 221
Sau3AI	GATC	1 cut(s)	404
Sau96I	GGNCC	1 cut(s)	179
ScrFI	CCNGG	2 cut(s)	323, 469
SduI	GDGCHC	1 cut(s)	268
SetI	ASST	5 cut(s)	58, 125, 191, 237, 371
SfaNI	GCATC	1 cut(s)	327
Sfr274I	CTCGAG	1 cut(s)	256
SlaI	CTCGAG	1 cut(s)	256
SmiMI	CAYNNNNRTG	1 cut(s)	455
SmlI	CTYRAG	2 cut(s)	256, 370
SmoI	CTYRAG	2 cut(s)	256, 370
Sse9I	AATT	2 cut(s)	195, 208
SsiI	CCGC	4 cut(s)	215, 218, 221, 261
StyD4I	CCNGG	2 cut(s)	321, 467
StyI	CCWWGG	1 cut(s)	308
TaaI	ACNGT	1 cut(s)	360
TaqI	TCGA	4 cut(s)	239, 257, 344, 365
TasI	AATT	2 cut(s)	195, 208
TauI	GCSGC	2 cut(s)	220, 223
TfiI	GAWTC	1 cut(s)	487
Tru1I	TTAA	1 cut(s)	518
Tru9I	TTAA	1 cut(s)	518
TscAI	CASTG	1 cut(s)	37
TspDTI	ATGAA	1 cut(s)	497
TspRI	CASTG	1 cut(s)	37
XagI	CCTNNNNNAGG	1 cut(s)	174
XapI	RAATTY	1 cut(s)	195
XhoI	CTCGAG	1 cut(s)	256
XmiI	GTMKAC	1 cut(s)	365
XmnI	GAANNNNTTC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.