Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004821

Physical Location & Seq

Genomic Coordinates Reverse (-)

16212467 .. 16216377

Gene Structure 3911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g16310.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGCTCTCAGTTTCGACTGTCAAATCAAATGAATTAAAGAAAATTAATAGATTTCGAGCTTCTAAATTACCTCTAACCGCAAGACTCTGCTTATCCAAAGCCCCAACACACACTCCCTACCCCTACTTCCAACTTCCCCCTTCACAGACACAACAAAGCTCGACAGCAATGGCCTTACTTCGTCATCTCTCTTTCCCCACTGAACAACTCCTCCCTCTCACACCTCTCCTCTCTCTCCAAAATCCACACCACCTCTCCAAGCACGCTTCGACCACTCTCTCGCTCTCCACCTCTCTTTCCTCCCCCGCTATCTCTCTCCCCCAAACCCACTCTCGCTCCTCCTCCCTCAGGGCCAAAAAGCTCGGCAATTTCATTCTCCAATTCTCCGCCGCCGCCCAAGGCCAAGCTCTCGACGAAACCCCAGTTCTCGAGGCCGAGCCCGAAGAGTTCTCCGACACAAGATTGCTTGCCCAGAATGTTCCTTGGCATTGTACCCCGGAAGACGTCCGTACTCTGTTCGAGAAGTACGGCACCGTCGTGGACGTTGAGCTTGCCATGTATGACAAGACCAGGAACAGGGGTTTGGCATTTGTAACAATGGGTTCGCCGGAGGAGGCTCGAATAGCTCTGGATAATCTTGAATCATCTGAAATGGAGGGTCGTGTCATAAAGATGGCTTATGCCAGGCCAAAAAAGACGAAGATTCCTCCCCCTTCTTCGCAACCCAAGCCAATAACTTTCAATTTGTATGTGGAAAATTTGCCATATGAAGCAAGATCTAAAGATCTCAAGGAGCTCTTCAAGTCAGAGGATTATAATGTTGTTACCGCAGAAATTGTATTCCAAAATAACCCGAGAAGGTCTGCAGGATATGGATTTGTGGGCTTCAAAACCAAGGCTGAGGCCGAGGCAGCGCTTTCTGCTTCCCACGGGAAGCTGCTTATGGGAAGACGAATTCGTGTGGCACGTGGTAAACAATTTATTAAAGTACCAAAAACAGAAAGTTCTAAGCTGGGTGATAAATCTACGGAATTGAATTCTAGTGTCGAGGAAGTGAACACAATTGTCAATGATACAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

361

Amino Acids

39.97

Weight (kDa)

9.43

Isoelectric Point (pI)

47.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09040 AT4G09040
fragaria_vesca	FvH4_5g36390 FvH4_5g36390
malus_domestica	MD08G1189600.v1.1 MD08G1189900.v1.1 MD15G1377200.v1.1
prunus_persica	Prupe.1G523800_v2.0.a1 Prupe.1G523800_v2.0.a1
pyrus_communis	pycom08g16310 pycom15g33680 pycom15g33730
rosa_chinensis	RchiOBHm_Chr7g0238361
rosa_laevigata	RLG00000000915 RLG00000000916 RLG00000000917
rosa_multiflora	Rmu_sc0001371.1_g000023
rosa_roxburghii	Rroxscaffold_3G00223080
rosa_rugosa	Rorug07G0311900 Rorug07G0312300
rosa_samantha	Rh7AG467000 Rh7BG437800 Rh7CG484700 Rh7CG485000 Rh7CG485100 Rh7DG453100 Rh7DG453400 Rh7DG453500
rosa_wichuraiana	Rw7G038680 Rw7G038720 Rw7G038790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	816
AatII	GACGTC	1 cut(s)	507
AccB1I	GGYRCC	1 cut(s)	530
AciI	CCGC	6 cut(s)	78, 306, 387, 390, 393, 828
AcsI	RAATTY	3 cut(s)	757, 954, 1036
AcvI	CACGTG	1 cut(s)	968
AcyI	GRCGYC	1 cut(s)	504
AfaI	GTAC	4 cut(s)	493, 511, 527, 990
AfeI	AGCGCT	1 cut(s)	915
AfiI	CCNNNNNNNGG	2 cut(s)	348, 576
AgsI	TTSAA	5 cut(s)	641, 742, 802, 889, 1036
AjnI	CCWGG	2 cut(s)	569, 683
AjuI	GAANNNNNNNTTGG	2 cut(s)	566, 598
AleI	CACNNNNGTG	1 cut(s)	536
AloI	GAACNNNNNNTCC	2 cut(s)	195, 227
AluBI	AGCT	9 cut(s)	59, 159, 361, 407, 550, 626, 796, 937, 1012
AluI	AGCT	9 cut(s)	59, 159, 361, 407, 550, 626, 796, 937, 1012
Alw21I	GWGCWC	1 cut(s)	798
Ama87I	CYCGRG	2 cut(s)	428, 853
Aor51HI	AGCGCT	1 cut(s)	915
AoxI	GGCC	6 cut(s)	171, 351, 400, 432, 686, 903
ApeKI	GCWGC	2 cut(s)	911, 937
ApoI	RAATTY	3 cut(s)	757, 954, 1036
AseI	ATTAAT	1 cut(s)	45
AspLEI	GCGC	1 cut(s)	916
AspS9I	GGNCC	1 cut(s)	351
AsuC2I	CCSGG	1 cut(s)	497
AsuHPI	GGTGA	1 cut(s)	1028
AvaI	CYCGRG	2 cut(s)	428, 853
AxyI	CCTNAGG	1 cut(s)	347
BanI	GGYRCC	1 cut(s)	530
BanII	GRGCYC	2 cut(s)	441, 798
BbrPI	CACGTG	1 cut(s)	968
BbsI	GAAGAC	2 cut(s)	507, 955
Bbv12I	GWGCWC	1 cut(s)	798
BbvCI	CCTCAGC	1 cut(s)	900
BbvI	GCAGC	2 cut(s)	923, 924
BccI	CCATC	1 cut(s)	667
BceAI	ACGGC	1 cut(s)	544
BciT130I	CCWGG	2 cut(s)	571, 685
BcnI	CCSGG	1 cut(s)	497
BfaI	CTAG	1 cut(s)	1041
BfmI	CTRYAG	1 cut(s)	864
BfoI	RGCGCY	1 cut(s)	917
BglII	AGATCT	2 cut(s)	776, 784
BisI	GCNGC	4 cut(s)	390, 393, 912, 938
BlsI	GCNGC	4 cut(s)	391, 394, 913, 939
Bme1390I	CCNGG	3 cut(s)	497, 571, 685
BmeT110I	CYCGRG	2 cut(s)	428, 853
BmgT120I	GGNCC	1 cut(s)	351
BmiI	GGNNCC	1 cut(s)	532
BmrFI	CCNGG	3 cut(s)	497, 571, 685
BmrI	ACTGGG	1 cut(s)	416
BmuI	ACTGGG	1 cut(s)	416
BpiI	GAAGAC	2 cut(s)	507, 955
Bpu10I	CCTNAGC	1 cut(s)	900
BpuEI	CTTGAG	1 cut(s)	773
BpuMI	CCSGG	1 cut(s)	497
BsaAI	YACGTR	1 cut(s)	968
BsaHI	GRCGYC	1 cut(s)	504
BsaJI	CCNNGG	6 cut(s)	397, 482, 495, 894, 906, 928
BsaXI	ACNNNNNCTCC	8 cut(s)	97, 127, 195, 225, 239, 269, 320, 350
Bsc4I	CCNNNNNNNGG	2 cut(s)	348, 576
Bse1I	ACTGG	1 cut(s)	422
Bse21I	CCTNAGG	1 cut(s)	347
Bse3DI	GCAATG	1 cut(s)	174
BseBI	CCWGG	2 cut(s)	571, 685
BseDI	CCNNGG	6 cut(s)	397, 482, 495, 894, 906, 928
BseLI	CCNNNNNNNGG	2 cut(s)	348, 576
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	3 cut(s)	21, 361, 891
BseNI	ACTGG	1 cut(s)	422
BseRI	GAGGAG	5 cut(s)	200, 218, 328, 331, 626
BseXI	GCAGC	2 cut(s)	923, 924
BseYI	CCCAGC	1 cut(s)	1012
BshFI	GGCC	6 cut(s)	173, 353, 402, 434, 688, 905
BshNI	GGYRCC	1 cut(s)	530
BsiHKAI	GWGCWC	1 cut(s)	798
BsiHKCI	CYCGRG	2 cut(s)	428, 853
BsiSI	CCGG	2 cut(s)	497, 608
BslI	CCNNNNNNNGG	2 cut(s)	348, 576
BsnI	GGCC	6 cut(s)	173, 353, 402, 434, 688, 905
BsoBI	CYCGRG	2 cut(s)	428, 853
Bsp1286I	GDGCHC	2 cut(s)	441, 798
Bsp143I	GATC	2 cut(s)	776, 784
BspACI	CCGC	6 cut(s)	78, 306, 387, 390, 393, 828
BspANI	GGCC	6 cut(s)	173, 353, 402, 434, 688, 905
BspCNI	CTCAG	3 cut(s)	20, 360, 892
BspLI	GGNNCC	1 cut(s)	532
BspMAI	CTGCAG	1 cut(s)	868
BspQI	GCTCTTC	1 cut(s)	803
BspT107I	GGYRCC	1 cut(s)	530
BsrDI	GCAATG	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	422
BssECI	CCNNGG	6 cut(s)	397, 482, 495, 894, 906, 928
BssMI	GATC	2 cut(s)	776, 784
BssNI	GRCGYC	1 cut(s)	504
BssT1I	CCWWGG	3 cut(s)	397, 482, 894
Bst2UI	CCWGG	2 cut(s)	571, 685
Bst4CI	ACNGT	2 cut(s)	19, 535
Bst6I	CTCTTC	2 cut(s)	438, 803
BstACI	GRCGYC	1 cut(s)	504
BstBAI	YACGTR	1 cut(s)	968
BstC8I	GCNNGC	3 cut(s)	264, 468, 552
BstDEI	CTNAG	4 cut(s)	7, 347, 900, 1008
BstDSI	CCRYGG	1 cut(s)	928
BstENI	CCTNNNNNAGG	1 cut(s)	346
BstH2I	RGCGCY	1 cut(s)	917
BstHHI	GCGC	1 cut(s)	916
BstKTI	GATC	2 cut(s)	779, 787
BstMBI	GATC	2 cut(s)	776, 784
BstMWI	GCNNNNNNNGC	4 cut(s)	623, 727, 911, 920
BstNI	CCWGG	2 cut(s)	571, 685
BstSCI	CCNGG	3 cut(s)	495, 569, 683
BstSFI	CTRYAG	1 cut(s)	864
BstV1I	GCAGC	2 cut(s)	923, 924
BstV2I	GAAGAC	2 cut(s)	507, 955
BstX2I	RGATCY	2 cut(s)	776, 784
BstYI	RGATCY	2 cut(s)	776, 784
Bsu36I	CCTNAGG	1 cut(s)	347
BsuRI	GGCC	6 cut(s)	173, 353, 402, 434, 688, 905
BtgI	CCRYGG	1 cut(s)	928
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	3 cut(s)	264, 468, 552
CfoI	GCGC	1 cut(s)	916
Cfr13I	GGNCC	1 cut(s)	351
Csp6I	GTAC	4 cut(s)	492, 510, 526, 989
CviAII	CATG	1 cut(s)	556
CviQI	GTAC	4 cut(s)	492, 510, 526, 989
DdeI	CTNAG	4 cut(s)	7, 347, 900, 1008
DpnI	GATC	2 cut(s)	778, 786
DpnII	GATC	2 cut(s)	776, 784
Eam1104I	CTCTTC	2 cut(s)	438, 803
EarI	CTCTTC	2 cut(s)	438, 803
EciI	GGCGGA	1 cut(s)	376
Ecl136II	GAGCTC	1 cut(s)	796
Eco130I	CCWWGG	3 cut(s)	397, 482, 894
Eco24I	GRGCYC	2 cut(s)	441, 798
Eco47III	AGCGCT	1 cut(s)	915
Eco53kI	GAGCTC	1 cut(s)	796
Eco72I	CACGTG	1 cut(s)	968
Eco81I	CCTNAGG	1 cut(s)	347
Eco88I	CYCGRG	2 cut(s)	428, 853
EcoICRI	GAGCTC	1 cut(s)	796
EcoNI	CCTNNNNNAGG	1 cut(s)	346
EcoRI	GAATTC	2 cut(s)	954, 1036
EcoRII	CCWGG	2 cut(s)	569, 683
EcoT14I	CCWWGG	3 cut(s)	397, 482, 894
EcoT38I	GRGCYC	2 cut(s)	441, 798
ErhI	CCWWGG	3 cut(s)	397, 482, 894
FaeI	CATG	1 cut(s)	559
FalI	AAGNNNNNCTT	2 cut(s)	782, 814
FatI	CATG	1 cut(s)	555
FauI	CCCGC	1 cut(s)	313
FauNDI	CATATG	1 cut(s)	766
Fnu4HI	GCNGC	4 cut(s)	390, 393, 912, 938
FriOI	GRGCYC	2 cut(s)	441, 798
Fsp4HI	GCNGC	4 cut(s)	390, 393, 912, 938
FspBI	CTAG	1 cut(s)	1041
GlaI	GCGC	1 cut(s)	915
GluI	GCNGC	4 cut(s)	390, 393, 912, 938
GsaI	CCCAGC	1 cut(s)	1016
HaeII	RGCGCY	1 cut(s)	917
HaeIII	GGCC	6 cut(s)	173, 353, 402, 434, 688, 905
HapII	CCGG	2 cut(s)	497, 608
HhaI	GCGC	1 cut(s)	916
Hin1I	GRCGYC	1 cut(s)	504
Hin1II	CATG	1 cut(s)	559
Hin6I	GCGC	1 cut(s)	914
HinP1I	GCGC	1 cut(s)	914
HinfI	GANTC	3 cut(s)	84, 641, 703
HpaII	CCGG	2 cut(s)	497, 608
HphI	GGTGA	1 cut(s)	1028
Hpy166II	GTNNAC	3 cut(s)	541, 974, 1057
Hpy188I	TCNGA	3 cut(s)	454, 649, 808
Hpy188III	TCNNGA	5 cut(s)	410, 428, 520, 629, 638
Hpy8I	GTNNAC	3 cut(s)	541, 974, 1057
Hpy99I	CGWCG	2 cut(s)	416, 539
HpyAV	CCTTC	3 cut(s)	150, 723, 852
HpyCH4III	ACNGT	2 cut(s)	19, 535
HpyCH4IV	ACGT	3 cut(s)	504, 543, 967
HpyCH4V	TGCA	1 cut(s)	866
HpyF10VI	GCNNNNNNNGC	4 cut(s)	623, 727, 911, 920
HpyF3I	CTNAG	4 cut(s)	7, 347, 900, 1008
HpySE526I	ACGT	3 cut(s)	504, 543, 967
Hsp92I	GRCGYC	1 cut(s)	504
Hsp92II	CATG	1 cut(s)	559
HspAI	GCGC	1 cut(s)	914
Kzo9I	GATC	2 cut(s)	776, 784
LguI	GCTCTTC	1 cut(s)	803
LmnI	GCTCC	2 cut(s)	341, 793
Lsp1109I	GCAGC	2 cut(s)	923, 924
MaeI	CTAG	1 cut(s)	1041
MaeII	ACGT	3 cut(s)	504, 543, 967
MaeIII	GTNAC	2 cut(s)	592, 823
MalI	GATC	2 cut(s)	778, 786
MboI	GATC	2 cut(s)	776, 784
MboII	GAAGA	6 cut(s)	455, 512, 708, 712, 790, 960
MfeI	CAATTG	1 cut(s)	1062
MflI	RGATCY	2 cut(s)	776, 784
MhlI	GDGCHC	2 cut(s)	441, 798
MlyI	GAGTC	1 cut(s)	78
MmeI	TCCRAC	2 cut(s)	154, 477
MseI	TTAA	3 cut(s)	35, 45, 984
MslI	CAYNNNNRTG	2 cut(s)	536, 671
MspI	CCGG	2 cut(s)	497, 608
MspR9I	CCNGG	3 cut(s)	497, 571, 685
MunI	CAATTG	1 cut(s)	1062
MvaI	CCWGG	2 cut(s)	571, 685
MwoI	GCNNNNNNNGC	4 cut(s)	623, 727, 911, 920
NciI	CCSGG	1 cut(s)	497
NdeI	CATATG	1 cut(s)	766
NdeII	GATC	2 cut(s)	776, 784
NlaIII	CATG	1 cut(s)	559
NlaIV	GGNNCC	1 cut(s)	532
NmeAIII	GCCGAG	3 cut(s)	342, 460, 931
OliI	CACNNNNGTG	1 cut(s)	536
PaeR7I	CTCGAG	1 cut(s)	428
PciSI	GCTCTTC	1 cut(s)	803
PcsI	WCGNNNNNNNCGW	2 cut(s)	534, 964
PfeI	GAWTC	2 cut(s)	641, 703
PkrI	GCNGC	4 cut(s)	391, 394, 913, 939
PleI	GAGTC	1 cut(s)	78
PmaCI	CACGTG	1 cut(s)	968
PmlI	CACGTG	1 cut(s)	968
PpsI	GAGTC	1 cut(s)	78
Ppu21I	YACGTR	1 cut(s)	968
PshBI	ATTAAT	1 cut(s)	45
PsiI	TTATAA	1 cut(s)	816
Psp124BI	GAGCTC	1 cut(s)	798
Psp6I	CCWGG	2 cut(s)	569, 683
PspCI	CACGTG	1 cut(s)	968
PspFI	CCCAGC	1 cut(s)	1012
PspGI	CCWGG	2 cut(s)	569, 683
PspN4I	GGNNCC	1 cut(s)	532
PspPI	GGNCC	1 cut(s)	351
PstI	CTGCAG	1 cut(s)	868
PsuI	RGATCY	2 cut(s)	776, 784
RsaI	GTAC	4 cut(s)	493, 511, 527, 990
RsaNI	GTAC	4 cut(s)	492, 510, 526, 989
RseI	CAYNNNNRTG	2 cut(s)	536, 671
SacI	GAGCTC	1 cut(s)	798
SapI	GCTCTTC	1 cut(s)	803
SaqAI	TTAA	3 cut(s)	35, 45, 984
SatI	GCNGC	4 cut(s)	390, 393, 912, 938
Sau3AI	GATC	2 cut(s)	776, 784
Sau96I	GGNCC	1 cut(s)	351
SchI	GAGTC	1 cut(s)	78
ScrFI	CCNGG	3 cut(s)	497, 571, 685
SduI	GDGCHC	2 cut(s)	441, 798
SfcI	CTRYAG	1 cut(s)	864
Sfr274I	CTCGAG	1 cut(s)	428
SlaI	CTCGAG	1 cut(s)	428
SmiMI	CAYNNNNRTG	2 cut(s)	536, 671
SmlI	CTYRAG	2 cut(s)	428, 788
SmoI	CTYRAG	2 cut(s)	428, 788
SsiI	CCGC	6 cut(s)	78, 306, 387, 390, 393, 828
SspMI	CTAG	1 cut(s)	1041
SstI	GAGCTC	1 cut(s)	798
StyD4I	CCNGG	3 cut(s)	495, 569, 683
StyI	CCWWGG	3 cut(s)	397, 482, 894
TaaI	ACNGT	2 cut(s)	19, 535
TaiI	ACGT	3 cut(s)	507, 546, 970
TaqI	TCGA	9 cut(s)	14, 55, 161, 269, 411, 429, 519, 619, 1047
TauI	GCSGC	2 cut(s)	392, 395
TfiI	GAWTC	2 cut(s)	641, 703
Tru1I	TTAA	3 cut(s)	35, 45, 984
Tru9I	TTAA	3 cut(s)	35, 45, 984
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	2 cut(s)	911, 937
TspDTI	ATGAA	3 cut(s)	45, 361, 783
TspGWI	ACGGA	2 cut(s)	497, 1043
TspRI	CASTG	1 cut(s)	205
VspI	ATTAAT	1 cut(s)	45
XagI	CCTNNNNNAGG	1 cut(s)	346
XapI	RAATTY	3 cut(s)	757, 954, 1036
XhoI	CTCGAG	1 cut(s)	428
XspI	CTAG	1 cut(s)	1041
ZraI	GACGTC	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.