Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004821

Physical Location & Seq

Genomic Coordinates Forward (+)

59259338 .. 59262777

Gene Structure 3440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G038720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCTTTGCTTCATCAACCGCTAGCACCTCTACCTTGTCTGCAAAACCCACACCACCTCCCCAAACACAAACCCACAACTCTCTCTTTTTCTGGGCCTCTTTTCTCACTCTCTCTTTCCTTATCTCACACCCACCGCACTCCCACCTCTTCAATCAGGACCAAAAAGCTTGAATCTTTCGTGCTCCAATTCTCCTCCACAGCCCAGGAAGAAGCCATTGGAGAAAACCCAGTTCTTGTGGAGCCAGAAACTGAAGTGTTCTCTGACACAAGATTGCTTGCCCAGAATGTGCCTTGGACTTGTACCCCTGAAGACATTAGGACCATGTTCGAGAAGTACGGCACCGTCGTCGACGTTGAGCTTGCTATGTATAACAAGACCAGAAACAGGGGATTGGCGTTTGTGACTATGGCTTCACCAGAGGAGGCTCGTGTGGCTCTCAATAGTCTCGAATCGACTGAAATGGACGGTCGTATAATAAAGATGGCTTATGCCAAGCCAAAAAAGAAGAAGATTCCCCCTCCTATGCCATCCAAGGACATAACATTTAATTTGTATGTGGAAAATTTGTCATACGAAGTAAGGGCTAAAGATCTCAGGGAGTTTTTTACTTCAGAAGGTACTGATATTGTTAATGCAGAAGTGGTATTCGAAGGTAATCCTAGAAGGTCCGCTGGATATGCATTTGTGAGCTTCAAGTCCAAGAAAGAGGCTGAGGCTGCCCTTGCTGCTTTCCACGGGAAGTTGTTTATGGGAAGAAAAATTCGTGTGGCACGTAGTAAACAATTTGTTAAAGTACCAACAGTTAAAGAACCAGCAGTAGAGAGTTCAGAGTCGGGTGATAATGCTACTGAACTGAGTTCTACTTCGGAGCAAGTGATAGCAGATGACAGTGATAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

301

Amino Acids

33.52

Weight (kDa)

7.76

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	95 - 160	2.7e-14	RNA recognition motif
RRM_1	PF00076	185 - 256	8.1e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09040 AT4G09040
fragaria_vesca	FvH4_5g36390 FvH4_5g36390
malus_domestica	MD08G1189600.v1.1 MD08G1189900.v1.1 MD15G1377200.v1.1
prunus_persica	Prupe.1G523800_v2.0.a1 Prupe.1G523800_v2.0.a1
pyrus_communis	pycom08g16310 pycom15g33680 pycom15g33730
rosa_chinensis	RchiOBHm_Chr7g0238361
rosa_laevigata	RLG00000000915 RLG00000000916 RLG00000000917
rosa_multiflora	Rmu_sc0001371.1_g000023
rosa_roxburghii	Rroxscaffold_3G00223080
rosa_rugosa	Rorug07G0311900 Rorug07G0312300
rosa_samantha	Rh7AG467000 Rh7BG437800 Rh7CG484700 Rh7CG485000 Rh7CG485100 Rh7DG453100 Rh7DG453400 Rh7DG453500
rosa_wichuraiana	Rw7G038680 Rw7G038720 Rw7G038790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	341
AccI	GTMKAC	1 cut(s)	351
AciI	CCGC	3 cut(s)	20, 136, 672
AcsI	RAATTY	2 cut(s)	565, 762
AcuI	CTGAAG	3 cut(s)	273, 330, 597
AfaI	GTAC	4 cut(s)	304, 338, 622, 798
AfiI	CCNNNNNNNGG	1 cut(s)	387
AgsI	TTSAA	3 cut(s)	153, 173, 697
AjnI	CCWGG	1 cut(s)	204
AjuI	GAANNNNNNNTTGG	2 cut(s)	201, 233
AluBI	AGCT	3 cut(s)	169, 361, 693
AluI	AGCT	3 cut(s)	169, 361, 693
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	1 cut(s)	452
AlwNI	CAGNNNCTG	1 cut(s)	251
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	2 cut(s)	719, 728
ApoI	RAATTY	2 cut(s)	565, 762
AspS9I	GGNCC	4 cut(s)	95, 159, 321, 669
AsuHPI	GGTGA	2 cut(s)	408, 851
AsuII	TTCGAA	1 cut(s)	651
AsuNHI	GCTAGC	1 cut(s)	22
AvaII	GGWCC	3 cut(s)	159, 321, 669
BanI	GGYRCC	1 cut(s)	341
BauI	CACGAG	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	186
BbvCI	CCTCAGC	1 cut(s)	714
BbvI	GCAGC	2 cut(s)	706, 715
BccI	CCATC	2 cut(s)	478, 538
BceAI	ACGGC	1 cut(s)	355
BcgI	CGANNNNNNTGC	2 cut(s)	331, 365
BciT130I	CCWGG	1 cut(s)	206
BcoDI	GTCTC	1 cut(s)	452
BfaI	CTAG	2 cut(s)	23, 663
BglII	AGATCT	1 cut(s)	592
BisI	GCNGC	2 cut(s)	720, 729
BlsI	GCNGC	2 cut(s)	721, 730
Bme1390I	CCNGG	1 cut(s)	206
Bme18I	GGWCC	3 cut(s)	159, 321, 669
BmgT120I	GGNCC	4 cut(s)	95, 159, 321, 669
BmiI	GGNNCC	2 cut(s)	243, 343
BmrFI	CCNGG	1 cut(s)	206
BmrI	ACTGGG	1 cut(s)	224
BmtI	GCTAGC	1 cut(s)	26
BmuI	ACTGGG	1 cut(s)	224
BpiI	GAAGAC	1 cut(s)	318
Bpu10I	CCTNAGC	1 cut(s)	714
Bpu14I	TTCGAA	1 cut(s)	651
BsaAI	YACGTR	1 cut(s)	776
BsaJI	CCNNGG	4 cut(s)	204, 293, 534, 736
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	1 cut(s)	387
Bse1I	ACTGG	1 cut(s)	230
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	4 cut(s)	204, 293, 534, 736
BseGI	GGATG	1 cut(s)	530
BseLI	CCNNNNNNNGG	1 cut(s)	387
BseMII	CTCAG	3 cut(s)	610, 705, 848
BseNI	ACTGG	1 cut(s)	230
BseRI	GAGGAG	2 cut(s)	184, 437
BseXI	GCAGC	2 cut(s)	706, 715
Bsh1285I	CGRYCG	1 cut(s)	472
BshFI	GGCC	1 cut(s)	97
BshNI	GGYRCC	1 cut(s)	341
BsiEI	CGRYCG	1 cut(s)	472
BsiHKAI	GWGCWC	1 cut(s)	186
BslI	CCNNNNNNNGG	1 cut(s)	387
BsmAI	GTCTC	1 cut(s)	452
BsnI	GGCC	1 cut(s)	97
Bsp119I	TTCGAA	1 cut(s)	651
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	1 cut(s)	592
BspACI	CCGC	3 cut(s)	20, 136, 672
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	3 cut(s)	609, 706, 849
BspLI	GGNNCC	2 cut(s)	243, 343
BspOI	GCTAGC	1 cut(s)	26
BspT104I	TTCGAA	1 cut(s)	651
BspT107I	GGYRCC	1 cut(s)	341
BsrI	ACTGG	1 cut(s)	230
BssECI	CCNNGG	4 cut(s)	204, 293, 534, 736
BssMI	GATC	1 cut(s)	592
BssSI	CACGAG	1 cut(s)	429
BssT1I	CCWWGG	2 cut(s)	293, 534
Bst2BI	CACGAG	1 cut(s)	429
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	4 cut(s)	346, 470, 805, 893
Bst6I	CTCTTC	1 cut(s)	154
BstBAI	YACGTR	1 cut(s)	776
BstBI	TTCGAA	1 cut(s)	651
BstC8I	GCNNGC	3 cut(s)	24, 279, 363
BstDEI	CTNAG	3 cut(s)	596, 714, 857
BstDSI	CCRYGG	1 cut(s)	736
BstF5I	GGATG	1 cut(s)	530
BstKTI	GATC	1 cut(s)	595
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	1 cut(s)	592
BstMCI	CGRYCG	1 cut(s)	472
BstMWI	GCNNNNNNNGC	5 cut(s)	434, 680, 719, 725, 728
BstNI	CCWGG	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	706, 715
BstV2I	GAAGAC	1 cut(s)	318
BstX2I	RGATCY	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	592
BsuRI	GGCC	1 cut(s)	97
BtgI	CCRYGG	1 cut(s)	736
BtsCI	GGATG	1 cut(s)	530
BtsIMutI	CAGTG	1 cut(s)	898
Cac8I	GCNNGC	3 cut(s)	24, 279, 363
CaiI	CAGNNNCTG	1 cut(s)	251
Cfr13I	GGNCC	4 cut(s)	95, 159, 321, 669
Csp6I	GTAC	4 cut(s)	303, 337, 621, 797
CviAII	CATG	1 cut(s)	325
CviQI	GTAC	4 cut(s)	303, 337, 621, 797
DdeI	CTNAG	3 cut(s)	596, 714, 857
DpnI	GATC	1 cut(s)	594
DpnII	GATC	1 cut(s)	592
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
Eco130I	CCWWGG	2 cut(s)	293, 534
Eco47I	GGWCC	3 cut(s)	159, 321, 669
Eco57I	CTGAAG	3 cut(s)	273, 330, 597
EcoRII	CCWGG	1 cut(s)	204
EcoT14I	CCWWGG	2 cut(s)	293, 534
EcoT22I	ATGCAT	1 cut(s)	685
ErhI	CCWWGG	2 cut(s)	293, 534
FaeI	CATG	1 cut(s)	328
FatI	CATG	1 cut(s)	324
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	2 cut(s)	720, 729
FokI	GGATG	1 cut(s)	517
Fsp4HI	GCNGC	2 cut(s)	720, 729
FspBI	CTAG	2 cut(s)	23, 663
GluI	GCNGC	2 cut(s)	720, 729
HaeIII	GGCC	1 cut(s)	97
Hin1II	CATG	1 cut(s)	328
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	4 cut(s)	173, 452, 514, 833
HphI	GGTGA	2 cut(s)	408, 851
Hpy166II	GTNNAC	2 cut(s)	352, 782
Hpy188I	TCNGA	4 cut(s)	265, 616, 832, 871
Hpy188III	TCNNGA	3 cut(s)	157, 331, 449
Hpy8I	GTNNAC	2 cut(s)	352, 782
Hpy99I	CGWCG	3 cut(s)	350, 353, 356
HpyAV	CCTTC	3 cut(s)	611, 647, 660
HpyCH4III	ACNGT	4 cut(s)	346, 470, 805, 893
HpyCH4IV	ACGT	2 cut(s)	354, 775
HpyCH4V	TGCA	3 cut(s)	43, 638, 683
HpyF10VI	GCNNNNNNNGC	5 cut(s)	434, 680, 719, 725, 728
HpyF3I	CTNAG	3 cut(s)	596, 714, 857
HpySE526I	ACGT	2 cut(s)	354, 775
Hsp92II	CATG	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	592
LmnI	GCTCC	3 cut(s)	189, 241, 871
Lsp1109I	GCAGC	2 cut(s)	706, 715
MaeI	CTAG	2 cut(s)	23, 663
MaeII	ACGT	2 cut(s)	354, 775
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	1 cut(s)	594
MboI	GATC	1 cut(s)	592
MboII	GAAGA	6 cut(s)	141, 221, 323, 520, 523, 768
MflI	RGATCY	1 cut(s)	592
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	5 cut(s)	188, 550, 565, 762, 785
MlyI	GAGTC	1 cut(s)	842
Mph1103I	ATGCAT	1 cut(s)	685
MseI	TTAA	4 cut(s)	549, 633, 792, 807
MspA1I	CMGCKG	1 cut(s)	674
MspR9I	CCNGG	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	5 cut(s)	434, 680, 719, 725, 728
NdeII	GATC	1 cut(s)	592
NheI	GCTAGC	1 cut(s)	22
NlaIII	CATG	1 cut(s)	328
NlaIV	GGNNCC	2 cut(s)	243, 343
NmuCI	GTSAC	1 cut(s)	403
NsiI	ATGCAT	1 cut(s)	685
NspV	TTCGAA	1 cut(s)	651
PcsI	WCGNNNNNNNCGW	2 cut(s)	345, 772
PfeI	GAWTC	3 cut(s)	173, 452, 514
PkrI	GCNGC	2 cut(s)	721, 730
PleI	GAGTC	1 cut(s)	841
PpsI	GAGTC	1 cut(s)	841
Ppu21I	YACGTR	1 cut(s)	776
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	2 cut(s)	243, 343
PspPI	GGNCC	4 cut(s)	95, 159, 321, 669
PstNI	CAGNNNCTG	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	592
RsaI	GTAC	4 cut(s)	304, 338, 622, 798
RsaNI	GTAC	4 cut(s)	303, 337, 621, 797
SalI	GTCGAC	1 cut(s)	350
SaqAI	TTAA	4 cut(s)	549, 633, 792, 807
SatI	GCNGC	2 cut(s)	720, 729
Sau3AI	GATC	1 cut(s)	592
Sau96I	GGNCC	4 cut(s)	95, 159, 321, 669
SchI	GAGTC	1 cut(s)	842
ScrFI	CCNGG	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	186
SfuI	TTCGAA	1 cut(s)	651
SgrDI	CGTCGACG	1 cut(s)	350
SinI	GGWCC	3 cut(s)	159, 321, 669
Sse9I	AATT	5 cut(s)	188, 550, 565, 762, 785
SsiI	CCGC	3 cut(s)	20, 136, 672
SspMI	CTAG	2 cut(s)	23, 663
StyD4I	CCNGG	1 cut(s)	204
StyI	CCWWGG	2 cut(s)	293, 534
TaaI	ACNGT	4 cut(s)	346, 470, 805, 893
TaiI	ACGT	2 cut(s)	357, 778
TaqI	TCGA	5 cut(s)	330, 351, 450, 455, 651
TasI	AATT	5 cut(s)	188, 550, 565, 762, 785
TfiI	GAWTC	3 cut(s)	173, 452, 514
Tru1I	TTAA	4 cut(s)	549, 633, 792, 807
Tru9I	TTAA	4 cut(s)	549, 633, 792, 807
TscAI	CASTG	1 cut(s)	898
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	2 cut(s)	719, 728
Tsp45I	GTSAC	1 cut(s)	403
TspRI	CASTG	1 cut(s)	898
VpaK11BI	GGWCC	3 cut(s)	159, 321, 669
XapI	RAATTY	2 cut(s)	565, 762
XmiI	GTMKAC	1 cut(s)	351
XspI	CTAG	2 cut(s)	23, 663
Zsp2I	ATGCAT	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.