Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004821

Physical Location & Seq

Genomic Coordinates Reverse (-)

33226139 .. 33229877

Gene Structure 3739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g33730.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAATAAAACAACCCTTATTGGCCTCTGTAAAGAAAACTTGGAAAACTACGTTGTTTTAAGCCATTTCGACCACCCCTTCTCTTTCCCCACGGAAGAACTCCTCCCTCTCACCTCTCCAAAATCCACCACACCTCTTCAAGTACAATCCGACCACCCTTTCTCTCTCCACCTCTCGTCCCCCCTCTCTCTCCCCCAAACCCACTCTCGTTCCACCTCCTTCAGGGCCAAAAAGCTCGGAAATTTCGTCCTTCAACTCTCCGCCGCCGCCCAAGAACAAGCTCTCGACGAAACCCCAGTCCTCGAGGCGGAGCCCATAGAGTTCTCCAACACAAGACTGCTTGCCCATAATGTTCCTTGGCATTGCACCCTGGAAGACATCCGTACTGTGTTCGAGAAGTACGGCACCGTCGTCGACATTGAGGAAATGGAGGGTCGTGTCATAAAGATGGTCTATGCCAGGCCGAAAAAGACGAAGATTCGTCCCCCTTTCTTCACAACCCAACGAACACAGTTGTCAATGATACAAACTGAATTTGGCTGGCATGGTGAATTTTCTGCATTATCTTCACATCATATTTGTGAACATATGTGTATGCTCACTCGTACTTTCCCTGCATACTCGGTGAGATTCTCACCGTCTTTTGGGGGGCGTATAACATTCATTGGATTGCTTCACTCTAGTACTTGTGCAAGGTTGCTGGAAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

237

Amino Acids

26.75

Weight (kDa)

6.86

Isoelectric Point (pI)

55.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09040 AT4G09040
fragaria_vesca	FvH4_5g36390 FvH4_5g36390
malus_domestica	MD08G1189600.v1.1 MD08G1189900.v1.1 MD15G1377200.v1.1
prunus_persica	Prupe.1G523800_v2.0.a1 Prupe.1G523800_v2.0.a1
pyrus_communis	pycom08g16310 pycom15g33680 pycom15g33730
rosa_chinensis	RchiOBHm_Chr7g0238361
rosa_laevigata	RLG00000000915 RLG00000000916 RLG00000000917
rosa_multiflora	Rmu_sc0001371.1_g000023
rosa_roxburghii	Rroxscaffold_3G00223080
rosa_rugosa	Rorug07G0311900 Rorug07G0312300
rosa_samantha	Rh7AG467000 Rh7BG437800 Rh7CG484700 Rh7CG485000 Rh7CG485100 Rh7DG453100 Rh7DG453400 Rh7DG453500
rosa_wichuraiana	Rw7G038680 Rw7G038720 Rw7G038790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	302
AccB1I	GGYRCC	1 cut(s)	404
AccI	GTMKAC	1 cut(s)	414
AciI	CCGC	4 cut(s)	261, 264, 267, 308
AcsI	RAATTY	3 cut(s)	241, 533, 551
AcuI	CTGAAG	1 cut(s)	205
AfaI	GTAC	5 cut(s)	144, 385, 401, 607, 685
AfiI	CCNNNNNNNGG	3 cut(s)	222, 307, 644
AgsI	TTSAA	2 cut(s)	140, 254
AjnI	CCWGG	2 cut(s)	369, 458
AluBI	AGCT	2 cut(s)	235, 281
AluI	AGCT	2 cut(s)	235, 281
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	3 cut(s)	22, 225, 461
ApoI	RAATTY	3 cut(s)	241, 533, 551
ArsI	GACNNNNNNTTYG	2 cut(s)	282, 314
AspS9I	GGNCC	1 cut(s)	225
AsuHPI	GGTGA	4 cut(s)	103, 560, 627, 637
AvaI	CYCGRG	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	381
BccI	CCATC	1 cut(s)	442
BceAI	ACGGC	1 cut(s)	418
BcgI	CGANNNNNNTGC	2 cut(s)	394, 428
BciT130I	CCWGG	2 cut(s)	371, 460
BfaI	CTAG	2 cut(s)	681, 709
BisI	GCNGC	2 cut(s)	264, 267
BlsI	GCNGC	2 cut(s)	265, 268
BmcAI	AGTACT	1 cut(s)	685
Bme1390I	CCNGG	2 cut(s)	371, 460
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	225
BmiI	GGNNCC	2 cut(s)	312, 406
BmrFI	CCNGG	2 cut(s)	371, 460
BmrI	ACTGGG	1 cut(s)	290
BmuI	ACTGGG	1 cut(s)	290
BpiI	GAAGAC	1 cut(s)	381
BsaJI	CCNNGG	3 cut(s)	90, 356, 369
Bsc4I	CCNNNNNNNGG	3 cut(s)	222, 307, 644
Bse1I	ACTGG	1 cut(s)	296
Bse3DI	GCAATG	1 cut(s)	361
BseBI	CCWGG	2 cut(s)	371, 460
BseDI	CCNNGG	3 cut(s)	90, 356, 369
BseGI	GGATG	1 cut(s)	378
BseLI	CCNNNNNNNGG	3 cut(s)	222, 307, 644
BseMI	GCAATG	1 cut(s)	361
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	1 cut(s)	92
BshFI	GGCC	3 cut(s)	24, 227, 463
BshNI	GGYRCC	1 cut(s)	404
BsiHKCI	CYCGRG	1 cut(s)	302
BslFI	GGGAC	2 cut(s)	163, 468
BslI	CCNNNNNNNGG	3 cut(s)	222, 307, 644
BsmFI	GGGAC	2 cut(s)	163, 468
BsnI	GGCC	3 cut(s)	24, 227, 463
BsoBI	CYCGRG	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	315
BspACI	CCGC	4 cut(s)	261, 264, 267, 308
BspANI	GGCC	3 cut(s)	24, 227, 463
BspLI	GGNNCC	2 cut(s)	312, 406
BspT107I	GGYRCC	1 cut(s)	404
BsrDI	GCAATG	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	296
BssECI	CCNNGG	3 cut(s)	90, 356, 369
BssT1I	CCWWGG	1 cut(s)	356
Bst2UI	CCWGG	2 cut(s)	371, 460
Bst4CI	ACNGT	4 cut(s)	388, 409, 513, 639
Bst6I	CTCTTC	1 cut(s)	141
BstC8I	GCNNGC	2 cut(s)	342, 542
BstDSI	CCRYGG	1 cut(s)	90
BstENI	CCTNNNNNAGG	1 cut(s)	220
BstF5I	GGATG	1 cut(s)	378
BstNI	CCWGG	2 cut(s)	371, 460
BstSCI	CCNGG	2 cut(s)	369, 458
BstV2I	GAAGAC	1 cut(s)	381
BsuRI	GGCC	3 cut(s)	24, 227, 463
BtgI	CCRYGG	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	378
Cac8I	GCNNGC	2 cut(s)	342, 542
Cfr13I	GGNCC	1 cut(s)	225
Csp6I	GTAC	5 cut(s)	143, 384, 400, 606, 684
CviAII	CATG	1 cut(s)	545
CviJI	RGCY	9 cut(s)	24, 63, 227, 235, 281, 313, 463, 540, 708
CviKI_1	RGCY	9 cut(s)	24, 63, 227, 235, 281, 313, 463, 540, 708
CviQI	GTAC	5 cut(s)	143, 384, 400, 606, 684
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
EciI	GGCGGA	2 cut(s)	250, 323
Eco130I	CCWWGG	1 cut(s)	356
Eco24I	GRGCYC	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	205
Eco88I	CYCGRG	1 cut(s)	302
EcoNI	CCTNNNNNAGG	1 cut(s)	220
EcoRII	CCWGG	2 cut(s)	369, 458
EcoT14I	CCWWGG	1 cut(s)	356
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	356
FaeI	CATG	1 cut(s)	548
FaqI	GGGAC	2 cut(s)	163, 468
FatI	CATG	1 cut(s)	544
FauNDI	CATATG	1 cut(s)	588
FblI	GTMKAC	1 cut(s)	414
Fnu4HI	GCNGC	2 cut(s)	264, 267
FokI	GGATG	1 cut(s)	365
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	2 cut(s)	264, 267
FspBI	CTAG	2 cut(s)	681, 709
GluI	GCNGC	2 cut(s)	264, 267
HaeIII	GGCC	3 cut(s)	24, 227, 463
Hin1II	CATG	1 cut(s)	548
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HinfI	GANTC	2 cut(s)	478, 630
HphI	GGTGA	4 cut(s)	103, 560, 627, 637
Hpy166II	GTNNAC	2 cut(s)	415, 584
Hpy188I	TCNGA	2 cut(s)	151, 239
Hpy188III	TCNNGA	2 cut(s)	284, 394
Hpy8I	GTNNAC	2 cut(s)	415, 584
Hpy99I	CGWCG	3 cut(s)	290, 413, 416
HpyAV	CCTTC	4 cut(s)	88, 229, 260, 698
HpyCH4III	ACNGT	4 cut(s)	388, 409, 513, 639
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	4 cut(s)	366, 560, 617, 692
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	1 cut(s)	548
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	9 cut(s)	208, 309, 356, 383, 445, 472, 526, 627, 686
MaeI	CTAG	2 cut(s)	681, 709
MaeII	ACGT	1 cut(s)	51
MboII	GAAGA	6 cut(s)	107, 128, 386, 484, 487, 558
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	3 cut(s)	241, 533, 551
MmeI	TCCRAC	2 cut(s)	174, 351
MseI	TTAA	1 cut(s)	59
MslI	CAYNNNNRTG	2 cut(s)	446, 579
MspR9I	CCNGG	2 cut(s)	371, 460
MvaI	CCWGG	2 cut(s)	371, 460
NdeI	CATATG	1 cut(s)	588
NlaIII	CATG	1 cut(s)	548
NlaIV	GGNNCC	2 cut(s)	312, 406
PaeR7I	CTCGAG	1 cut(s)	302
PcsI	WCGNNNNNNNCGW	2 cut(s)	243, 408
PfeI	GAWTC	2 cut(s)	478, 630
PkrI	GCNGC	2 cut(s)	265, 268
Psp6I	CCWGG	2 cut(s)	369, 458
PspGI	CCWGG	2 cut(s)	369, 458
PspN4I	GGNNCC	2 cut(s)	312, 406
PspPI	GGNCC	1 cut(s)	225
PspXI	VCTCGAGB	1 cut(s)	302
RsaI	GTAC	5 cut(s)	144, 385, 401, 607, 685
RsaNI	GTAC	5 cut(s)	143, 384, 400, 606, 684
RseI	CAYNNNNRTG	2 cut(s)	446, 579
SalI	GTCGAC	1 cut(s)	413
SaqAI	TTAA	1 cut(s)	59
SatI	GCNGC	2 cut(s)	264, 267
Sau96I	GGNCC	1 cut(s)	225
ScaI	AGTACT	1 cut(s)	685
ScrFI	CCNGG	2 cut(s)	371, 460
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	8 cut(s)	54, 116, 136, 174, 218, 237, 283, 698
Sfr274I	CTCGAG	1 cut(s)	302
SlaI	CTCGAG	1 cut(s)	302
SmiMI	CAYNNNNRTG	2 cut(s)	446, 579
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	3 cut(s)	241, 533, 551
SsiI	CCGC	4 cut(s)	261, 264, 267, 308
SspMI	CTAG	2 cut(s)	681, 709
StyD4I	CCNGG	2 cut(s)	369, 458
StyI	CCWWGG	1 cut(s)	356
TaaI	ACNGT	4 cut(s)	388, 409, 513, 639
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	5 cut(s)	69, 285, 303, 393, 414
TasI	AATT	3 cut(s)	241, 533, 551
TatI	WGTACW	2 cut(s)	142, 683
TauI	GCSGC	2 cut(s)	266, 269
TfiI	GAWTC	2 cut(s)	478, 630
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TspDTI	ATGAA	2 cut(s)	17, 652
TspGWI	ACGGA	2 cut(s)	107, 371
XagI	CCTNNNNNAGG	1 cut(s)	220
XapI	RAATTY	3 cut(s)	241, 533, 551
XhoI	CTCGAG	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	414
XspI	CTAG	2 cut(s)	681, 709
ZrmI	AGTACT	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.