Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0004821

Physical Location & Seq

Genomic Coordinates Reverse (-)

23951009 .. 23955193

Gene Structure 4185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1189900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCTTTACTTCGTCATCTCTCTTTCCCCACTGAACAACTCCTCCCTCTCACAACTCTCCTCTCTCTCCAAATTCCACAGCACCTCTCCAAGCACACTCCAACCACTCTCTCTCTCTCCCCCTCTCTTTGCTCCCCCTCTCTCTTTCTCCCCCAAACCCACTCTCGCTCCTCCTCCCTCAGGGCCAAAAAGCTCGGCAATTTCGTTCTCCAATTCTCCGCCGCCGCCCAAGACCAAGCTCTCGACGAAACCCCAGTTCTCGAGGCAGAGCCCGAAGAGTTCTCCGACACAAGATTGCTTGCCCAGAATGTTCCTTGGCATTGTACCCCGGAAGACGTCCGTACTGTGTTCGAGAAGTATGGCACCGTCGTGGACGTTGAGCTTGCCATGTATGACAAGACCAGGAACAGGGGTTTGGCATTTGTAACAATGGGTTCGCCGGAGGAGGCTCGAATGGCTCTGGATAATCTTGAATCATCTGAAATGGAGGGTCGTGTCATAAAGATGGCTTATGCCAGGCCAAAAAAGACGAAGATTCCTCCCCCTTCTTCGCAACCCAAGCCAATAACTTTCAATTTGTATGTGGAAAATTTGCCATATGAAGCAAGATCTAAAGATCTCAAGGAGCTCTTTAAGTCAGAGGATTATAATGTTGTTACCGCAGAAATTGTGTTCCAAAATAACCCGAGAAGGTCCGCAGGATATGGATTTGTGGGCTTCAAAACCAAGGCCGAGGCCGAGGCAGCTCTTTCTGCTTCCCACGGGAAGCTGCTTATGGGAAGACGAATTCGTGTGGCACGTGGTAAACAATTTGTTAAAGTACCAAAAACAGAAAGTTCTAAGCAGGGTGATAAATCTACGGAATTGAATTCTAGTGTCGAGGAAGTGAACACAGTTGTCAATGATACAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

305

Amino Acids

33.88

Weight (kDa)

8.39

Isoelectric Point (pI)

51.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	102 - 168	6.9e-13	RNA recognition motif
RRM_1	PF00076	193 - 264	6e-15	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09040 AT4G09040
fragaria_vesca	FvH4_5g36390 FvH4_5g36390
malus_domestica	MD08G1189600.v1.1 MD08G1189900.v1.1 MD15G1377200.v1.1
prunus_persica	Prupe.1G523800_v2.0.a1 Prupe.1G523800_v2.0.a1
pyrus_communis	pycom08g16310 pycom15g33680 pycom15g33730
rosa_chinensis	RchiOBHm_Chr7g0238361
rosa_laevigata	RLG00000000915 RLG00000000916 RLG00000000917
rosa_multiflora	Rmu_sc0001371.1_g000023
rosa_roxburghii	Rroxscaffold_3G00223080
rosa_rugosa	Rorug07G0311900 Rorug07G0312300
rosa_samantha	Rh7AG467000 Rh7BG437800 Rh7CG484700 Rh7CG485000 Rh7CG485100 Rh7DG453100 Rh7DG453400 Rh7DG453500
rosa_wichuraiana	Rw7G038680 Rw7G038720 Rw7G038790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	648
AatII	GACGTC	1 cut(s)	339
AccB1I	GGYRCC	1 cut(s)	362
AciI	CCGC	5 cut(s)	219, 222, 225, 660, 696
AcsI	RAATTY	4 cut(s)	72, 589, 786, 868
AcvI	CACGTG	1 cut(s)	800
AcyI	GRCGYC	1 cut(s)	336
AfaI	GTAC	3 cut(s)	325, 343, 822
AfiI	CCNNNNNNNGG	2 cut(s)	180, 408
AgsI	TTSAA	4 cut(s)	473, 574, 721, 868
AjnI	CCWGG	2 cut(s)	401, 515
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AleI	CACNNNNGTG	1 cut(s)	368
AloI	GAACNNNNNNTCC	2 cut(s)	27, 59
AluBI	AGCT	6 cut(s)	193, 239, 382, 628, 746, 769
AluI	AGCT	6 cut(s)	193, 239, 382, 628, 746, 769
Alw21I	GWGCWC	1 cut(s)	630
Ama87I	CYCGRG	2 cut(s)	260, 685
AoxI	GGCC	4 cut(s)	183, 518, 729, 735
ApeKI	GCWGC	2 cut(s)	743, 769
ApoI	RAATTY	4 cut(s)	72, 589, 786, 868
AspS9I	GGNCC	2 cut(s)	183, 693
AsuC2I	CCSGG	1 cut(s)	329
AsuHPI	GGTGA	1 cut(s)	860
AvaI	CYCGRG	2 cut(s)	260, 685
AvaII	GGWCC	1 cut(s)	693
AxyI	CCTNAGG	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	362
BanII	GRGCYC	2 cut(s)	273, 630
BbrPI	CACGTG	1 cut(s)	800
BbsI	GAAGAC	2 cut(s)	339, 787
Bbv12I	GWGCWC	1 cut(s)	630
BbvI	GCAGC	2 cut(s)	755, 756
BccI	CCATC	1 cut(s)	499
BciT130I	CCWGG	2 cut(s)	403, 517
BcnI	CCSGG	1 cut(s)	329
BfaI	CTAG	1 cut(s)	873
BglII	AGATCT	2 cut(s)	608, 616
BisI	GCNGC	4 cut(s)	222, 225, 744, 770
BlsI	GCNGC	4 cut(s)	223, 226, 745, 771
Bme1390I	CCNGG	3 cut(s)	329, 403, 517
Bme18I	GGWCC	1 cut(s)	693
BmeT110I	CYCGRG	2 cut(s)	260, 685
BmgT120I	GGNCC	2 cut(s)	183, 693
BmiI	GGNNCC	1 cut(s)	364
BmrFI	CCNGG	3 cut(s)	329, 403, 517
BmrI	ACTGGG	1 cut(s)	248
BmuI	ACTGGG	1 cut(s)	248
BpiI	GAAGAC	2 cut(s)	339, 787
BpuEI	CTTGAG	1 cut(s)	605
BpuMI	CCSGG	1 cut(s)	329
BsaAI	YACGTR	1 cut(s)	800
BsaHI	GRCGYC	1 cut(s)	336
BsaJI	CCNNGG	6 cut(s)	314, 327, 726, 732, 738, 760
BsaXI	ACNNNNNCTCC	4 cut(s)	27, 57, 152, 182
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 408
Bse1I	ACTGG	1 cut(s)	254
Bse21I	CCTNAGG	1 cut(s)	179
BseBI	CCWGG	2 cut(s)	403, 517
BseDI	CCNNGG	6 cut(s)	314, 327, 726, 732, 738, 760
BseLI	CCNNNNNNNGG	2 cut(s)	180, 408
BseMII	CTCAG	1 cut(s)	193
BseNI	ACTGG	1 cut(s)	254
BseRI	GAGGAG	5 cut(s)	32, 50, 160, 163, 458
BseXI	GCAGC	2 cut(s)	755, 756
BshFI	GGCC	4 cut(s)	185, 520, 731, 737
BshNI	GGYRCC	1 cut(s)	362
BsiHKAI	GWGCWC	1 cut(s)	630
BsiHKCI	CYCGRG	2 cut(s)	260, 685
BsiSI	CCGG	2 cut(s)	329, 440
BslI	CCNNNNNNNGG	2 cut(s)	180, 408
BsnI	GGCC	4 cut(s)	185, 520, 731, 737
BsoBI	CYCGRG	2 cut(s)	260, 685
Bsp1286I	GDGCHC	2 cut(s)	273, 630
Bsp143I	GATC	2 cut(s)	608, 616
BspACI	CCGC	5 cut(s)	219, 222, 225, 660, 696
BspANI	GGCC	4 cut(s)	185, 520, 731, 737
BspCNI	CTCAG	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	364
BspT107I	GGYRCC	1 cut(s)	362
BsrI	ACTGG	1 cut(s)	254
BssECI	CCNNGG	6 cut(s)	314, 327, 726, 732, 738, 760
BssMI	GATC	2 cut(s)	608, 616
BssNI	GRCGYC	1 cut(s)	336
BssT1I	CCWWGG	2 cut(s)	314, 726
Bst2UI	CCWGG	2 cut(s)	403, 517
Bst4CI	ACNGT	3 cut(s)	346, 367, 895
Bst6I	CTCTTC	1 cut(s)	270
BstACI	GRCGYC	1 cut(s)	336
BstBAI	YACGTR	1 cut(s)	800
BstC8I	GCNNGC	2 cut(s)	300, 384
BstDEI	CTNAG	2 cut(s)	179, 840
BstDSI	CCRYGG	1 cut(s)	760
BstENI	CCTNNNNNAGG	1 cut(s)	178
BstKTI	GATC	2 cut(s)	611, 619
BstMBI	GATC	2 cut(s)	608, 616
BstMWI	GCNNNNNNNGC	4 cut(s)	455, 559, 743, 752
BstNI	CCWGG	2 cut(s)	403, 517
BstSCI	CCNGG	3 cut(s)	327, 401, 515
BstV1I	GCAGC	2 cut(s)	755, 756
BstV2I	GAAGAC	2 cut(s)	339, 787
BstX2I	RGATCY	2 cut(s)	608, 616
BstYI	RGATCY	2 cut(s)	608, 616
Bsu36I	CCTNAGG	1 cut(s)	179
BsuRI	GGCC	4 cut(s)	185, 520, 731, 737
BtgI	CCRYGG	1 cut(s)	760
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	2 cut(s)	300, 384
Cfr13I	GGNCC	2 cut(s)	183, 693
Csp6I	GTAC	3 cut(s)	324, 342, 821
CviAII	CATG	1 cut(s)	388
CviQI	GTAC	3 cut(s)	324, 342, 821
DdeI	CTNAG	2 cut(s)	179, 840
DpnI	GATC	2 cut(s)	610, 618
DpnII	GATC	2 cut(s)	608, 616
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
EciI	GGCGGA	1 cut(s)	208
Ecl136II	GAGCTC	1 cut(s)	628
Eco130I	CCWWGG	2 cut(s)	314, 726
Eco24I	GRGCYC	2 cut(s)	273, 630
Eco47I	GGWCC	1 cut(s)	693
Eco53kI	GAGCTC	1 cut(s)	628
Eco72I	CACGTG	1 cut(s)	800
Eco81I	CCTNAGG	1 cut(s)	179
Eco88I	CYCGRG	2 cut(s)	260, 685
EcoICRI	GAGCTC	1 cut(s)	628
EcoNI	CCTNNNNNAGG	1 cut(s)	178
EcoRI	GAATTC	2 cut(s)	786, 868
EcoRII	CCWGG	2 cut(s)	401, 515
EcoT14I	CCWWGG	2 cut(s)	314, 726
EcoT38I	GRGCYC	2 cut(s)	273, 630
ErhI	CCWWGG	2 cut(s)	314, 726
FaeI	CATG	1 cut(s)	391
FalI	AAGNNNNNCTT	2 cut(s)	614, 646
FatI	CATG	1 cut(s)	387
FauNDI	CATATG	1 cut(s)	598
Fnu4HI	GCNGC	4 cut(s)	222, 225, 744, 770
FriOI	GRGCYC	2 cut(s)	273, 630
Fsp4HI	GCNGC	4 cut(s)	222, 225, 744, 770
FspBI	CTAG	1 cut(s)	873
GluI	GCNGC	4 cut(s)	222, 225, 744, 770
HaeIII	GGCC	4 cut(s)	185, 520, 731, 737
HapII	CCGG	2 cut(s)	329, 440
Hin1I	GRCGYC	1 cut(s)	336
Hin1II	CATG	1 cut(s)	391
HinfI	GANTC	2 cut(s)	473, 535
HpaII	CCGG	2 cut(s)	329, 440
HphI	GGTGA	1 cut(s)	860
Hpy166II	GTNNAC	3 cut(s)	373, 806, 889
Hpy188I	TCNGA	3 cut(s)	286, 481, 640
Hpy188III	TCNNGA	5 cut(s)	242, 260, 352, 461, 470
Hpy8I	GTNNAC	3 cut(s)	373, 806, 889
Hpy99I	CGWCG	2 cut(s)	248, 371
HpyAV	CCTTC	2 cut(s)	555, 684
HpyCH4III	ACNGT	3 cut(s)	346, 367, 895
HpyCH4IV	ACGT	3 cut(s)	336, 375, 799
HpyF10VI	GCNNNNNNNGC	4 cut(s)	455, 559, 743, 752
HpyF3I	CTNAG	2 cut(s)	179, 840
HpySE526I	ACGT	3 cut(s)	336, 375, 799
Hsp92I	GRCGYC	1 cut(s)	336
Hsp92II	CATG	1 cut(s)	391
Kzo9I	GATC	2 cut(s)	608, 616
LmnI	GCTCC	3 cut(s)	137, 173, 625
Lsp1109I	GCAGC	2 cut(s)	755, 756
MaeI	CTAG	1 cut(s)	873
MaeII	ACGT	3 cut(s)	336, 375, 799
MaeIII	GTNAC	2 cut(s)	424, 655
MalI	GATC	2 cut(s)	610, 618
MboI	GATC	2 cut(s)	608, 616
MboII	GAAGA	5 cut(s)	287, 344, 540, 544, 792
MflI	RGATCY	2 cut(s)	608, 616
MhlI	GDGCHC	2 cut(s)	273, 630
MmeI	TCCRAC	2 cut(s)	125, 309
MseI	TTAA	2 cut(s)	633, 816
MslI	CAYNNNNRTG	2 cut(s)	368, 503
MspI	CCGG	2 cut(s)	329, 440
MspR9I	CCNGG	3 cut(s)	329, 403, 517
MvaI	CCWGG	2 cut(s)	403, 517
MwoI	GCNNNNNNNGC	4 cut(s)	455, 559, 743, 752
NciI	CCSGG	1 cut(s)	329
NdeI	CATATG	1 cut(s)	598
NdeII	GATC	2 cut(s)	608, 616
NlaIII	CATG	1 cut(s)	391
NlaIV	GGNNCC	1 cut(s)	364
NmeAIII	GCCGAG	3 cut(s)	174, 757, 763
OliI	CACNNNNGTG	1 cut(s)	368
PaeR7I	CTCGAG	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	2 cut(s)	201, 796
PfeI	GAWTC	2 cut(s)	473, 535
PkrI	GCNGC	4 cut(s)	223, 226, 745, 771
PmaCI	CACGTG	1 cut(s)	800
PmlI	CACGTG	1 cut(s)	800
Ppu21I	YACGTR	1 cut(s)	800
PsiI	TTATAA	1 cut(s)	648
Psp124BI	GAGCTC	1 cut(s)	630
Psp6I	CCWGG	2 cut(s)	401, 515
PspCI	CACGTG	1 cut(s)	800
PspGI	CCWGG	2 cut(s)	401, 515
PspN4I	GGNNCC	1 cut(s)	364
PspPI	GGNCC	2 cut(s)	183, 693
PsuI	RGATCY	2 cut(s)	608, 616
RsaI	GTAC	3 cut(s)	325, 343, 822
RsaNI	GTAC	3 cut(s)	324, 342, 821
RseI	CAYNNNNRTG	2 cut(s)	368, 503
SacI	GAGCTC	1 cut(s)	630
SaqAI	TTAA	2 cut(s)	633, 816
SatI	GCNGC	4 cut(s)	222, 225, 744, 770
Sau3AI	GATC	2 cut(s)	608, 616
Sau96I	GGNCC	2 cut(s)	183, 693
ScrFI	CCNGG	3 cut(s)	329, 403, 517
SduI	GDGCHC	2 cut(s)	273, 630
Sfr274I	CTCGAG	1 cut(s)	260
SinI	GGWCC	1 cut(s)	693
SlaI	CTCGAG	1 cut(s)	260
SmiMI	CAYNNNNRTG	2 cut(s)	368, 503
SmlI	CTYRAG	2 cut(s)	260, 620
SmoI	CTYRAG	2 cut(s)	260, 620
SsiI	CCGC	5 cut(s)	219, 222, 225, 660, 696
SspMI	CTAG	1 cut(s)	873
SstI	GAGCTC	1 cut(s)	630
StyD4I	CCNGG	3 cut(s)	327, 401, 515
StyI	CCWWGG	2 cut(s)	314, 726
TaaI	ACNGT	3 cut(s)	346, 367, 895
TaiI	ACGT	3 cut(s)	339, 378, 802
TaqI	TCGA	5 cut(s)	243, 261, 351, 451, 879
TauI	GCSGC	2 cut(s)	224, 227
TfiI	GAWTC	2 cut(s)	473, 535
Tru1I	TTAA	2 cut(s)	633, 816
Tru9I	TTAA	2 cut(s)	633, 816
TscAI	CASTG	1 cut(s)	37
TseI	GCWGC	2 cut(s)	743, 769
TspDTI	ATGAA	1 cut(s)	615
TspGWI	ACGGA	2 cut(s)	329, 875
TspRI	CASTG	1 cut(s)	37
VpaK11BI	GGWCC	1 cut(s)	693
XagI	CCTNNNNNAGG	1 cut(s)	178
XapI	RAATTY	4 cut(s)	72, 589, 786, 868
XhoI	CTCGAG	1 cut(s)	260
XspI	CTAG	1 cut(s)	873
ZraI	GACGTC	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.