Rh7DG453500

kDa ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004821
Physical Location & Seq
Forward (+)
64544830 .. 64545995
1166 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG453500.1

Sequence Viewer

Length: 540 bp
ATGTATAACAAGACCAGAAACAGGGGATTGGCGTTTGTGACTATGGCTTCACCAGAGGAGGCTCGTGTGGCTCTCAATGGTCTCGAATCGACTGAAATGGACGGTCGTATAATAAAGATGGCTTATGCCAAGCCAAAAAAGAAGAAGATTCCCCCTCCTATGCCATCCAAGGACATAACATTTAATTTGTATGTGGAAAATTTGTCATACGAAGTAAGGGCTAAAGATCTCAGGGAGTTTTTTACTTCAGAGGGTACTGATATTGTTAATGCAGAAGTGGTATTCGAAGGTAATCCTAGAAGGTCTGCTGGATATGCATTTGTGAGCTTCAAGTCCAAGAAAGAGGCTGAGGCTGCCCTTGCTGCTTTCCACGGGAAGTTGTTTATGGGACGAAAAATTCGTGTGGCACGTAGTAAACAATTTGTTAAAGTACCAACAGTTAAAGAACCAGCAGTAGAGAGTTCAGAGTCGGGTGATAATGCTACTGAACTGAGTTCTACTTCGGAGCAAGTGATAGCAGATGACAGTGATAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03018 map03013 map03015 map03018
Pfam Domains
Protein Families
RRM_1

Protein Analysis

179

Amino Acids

19.91

Weight (kDa)

9.3

Isoelectric Point (pI)

45.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 63 - 134 2.9e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 199, 396
AcuI CTGAAG 1 cut(s) 231
AfaI GTAC 2 cut(s) 256, 432
AfiI CCNNNNNNNGG 1 cut(s) 21
AgsI TTSAA 1 cut(s) 331
AluBI AGCT 1 cut(s) 327
AluI AGCT 1 cut(s) 327
Alw26I GTCTC 1 cut(s) 86
ApeKI GCWGC 2 cut(s) 353, 362
ApoI RAATTY 2 cut(s) 199, 396
ArsI GACNNNNNNTTYG 2 cut(s) 381, 413
AsuHPI GGTGA 2 cut(s) 42, 485
AsuII TTCGAA 1 cut(s) 285
BauI CACGAG 1 cut(s) 63
BbvCI CCTCAGC 1 cut(s) 348
BbvI GCAGC 2 cut(s) 340, 349
BccI CCATC 2 cut(s) 112, 172
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 1 cut(s) 297
BglII AGATCT 1 cut(s) 226
BisI GCNGC 2 cut(s) 354, 363
BlsI GCNGC 2 cut(s) 355, 364
Bpu10I CCTNAGC 1 cut(s) 348
Bpu14I TTCGAA 1 cut(s) 285
BsaAI YACGTR 1 cut(s) 410
BsaI GGTCTC 1 cut(s) 86
BsaJI CCNNGG 2 cut(s) 168, 370
Bsc4I CCNNNNNNNGG 1 cut(s) 21
BseDI CCNNGG 2 cut(s) 168, 370
BseGI GGATG 1 cut(s) 164
BseLI CCNNNNNNNGG 1 cut(s) 21
BseMII CTCAG 3 cut(s) 244, 339, 482
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 2 cut(s) 340, 349
Bsh1285I CGRYCG 1 cut(s) 106
BsiEI CGRYCG 1 cut(s) 106
BslFI GGGAC 1 cut(s) 402
BslI CCNNNNNNNGG 1 cut(s) 21
BsmAI GTCTC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 402
Bso31I GGTCTC 1 cut(s) 86
Bsp119I TTCGAA 1 cut(s) 285
Bsp143I GATC 1 cut(s) 226
BspCNI CTCAG 3 cut(s) 243, 340, 483
BspT104I TTCGAA 1 cut(s) 285
BspTNI GGTCTC 1 cut(s) 86
BssECI CCNNGG 2 cut(s) 168, 370
BssMI GATC 1 cut(s) 226
BssSI CACGAG 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 168
Bst2BI CACGAG 1 cut(s) 63
Bst4CI ACNGT 3 cut(s) 104, 439, 527
BstBAI YACGTR 1 cut(s) 410
BstBI TTCGAA 1 cut(s) 285
BstDEI CTNAG 3 cut(s) 230, 348, 491
BstDSI CCRYGG 1 cut(s) 370
BstF5I GGATG 1 cut(s) 164
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 1 cut(s) 226
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 5 cut(s) 68, 314, 353, 359, 362
BstV1I GCAGC 2 cut(s) 340, 349
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BtgI CCRYGG 1 cut(s) 370
BtsCI GGATG 1 cut(s) 164
BtsIMutI CAGTG 1 cut(s) 532
Csp6I GTAC 2 cut(s) 255, 431
CviJI RGCY 9 cut(s) 47, 62, 71, 122, 133, 221, 327, 347, 353
CviKI_1 RGCY 9 cut(s) 47, 62, 71, 122, 133, 221, 327, 347, 353
CviQI GTAC 2 cut(s) 255, 431
DdeI CTNAG 3 cut(s) 230, 348, 491
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
Eco130I CCWWGG 1 cut(s) 168
Eco31I GGTCTC 1 cut(s) 86
Eco57I CTGAAG 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 168
EcoT22I ATGCAT 1 cut(s) 319
ErhI CCWWGG 1 cut(s) 168
FaqI GGGAC 1 cut(s) 402
Fnu4HI GCNGC 2 cut(s) 354, 363
FokI GGATG 1 cut(s) 151
Fsp4HI GCNGC 2 cut(s) 354, 363
FspBI CTAG 1 cut(s) 297
GluI GCNGC 2 cut(s) 354, 363
HinfI GANTC 3 cut(s) 86, 148, 467
HphI GGTGA 2 cut(s) 42, 485
Hpy166II GTNNAC 1 cut(s) 416
Hpy188I TCNGA 3 cut(s) 250, 466, 505
Hpy188III TCNNGA 1 cut(s) 83
Hpy8I GTNNAC 1 cut(s) 416
HpyAV CCTTC 2 cut(s) 281, 294
HpyCH4III ACNGT 3 cut(s) 104, 439, 527
HpyCH4IV ACGT 1 cut(s) 409
HpyCH4V TGCA 2 cut(s) 272, 317
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 314, 353, 359, 362
HpyF3I CTNAG 3 cut(s) 230, 348, 491
HpySE526I ACGT 1 cut(s) 409
Kzo9I GATC 1 cut(s) 226
LmnI GCTCC 1 cut(s) 505
LpnPI CCDG 6 cut(s) 7, 28, 66, 217, 294, 462
Lsp1109I GCAGC 2 cut(s) 340, 349
MaeI CTAG 1 cut(s) 297
MaeII ACGT 1 cut(s) 409
MaeIII GTNAC 1 cut(s) 37
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 2 cut(s) 154, 157
MflI RGATCY 1 cut(s) 226
MluCI AATT 4 cut(s) 184, 199, 396, 419
MlyI GAGTC 1 cut(s) 476
MnlI CCTC 6 cut(s) 49, 52, 165, 244, 337, 343
Mph1103I ATGCAT 1 cut(s) 319
MseI TTAA 4 cut(s) 183, 267, 426, 441
MwoI GCNNNNNNNGC 5 cut(s) 68, 314, 353, 359, 362
NdeII GATC 1 cut(s) 226
NmuCI GTSAC 1 cut(s) 37
NsiI ATGCAT 1 cut(s) 319
NspV TTCGAA 1 cut(s) 285
PcsI WCGNNNNNNNCGW 2 cut(s) 397, 406
PfeI GAWTC 2 cut(s) 86, 148
PkrI GCNGC 2 cut(s) 355, 364
PleI GAGTC 1 cut(s) 475
PpsI GAGTC 1 cut(s) 475
Ppu21I YACGTR 1 cut(s) 410
PsuI RGATCY 1 cut(s) 226
RsaI GTAC 2 cut(s) 256, 432
RsaNI GTAC 2 cut(s) 255, 431
SaqAI TTAA 4 cut(s) 183, 267, 426, 441
SatI GCNGC 2 cut(s) 354, 363
Sau3AI GATC 1 cut(s) 226
SchI GAGTC 1 cut(s) 476
SetI ASST 4 cut(s) 292, 305, 329, 412
SfuI TTCGAA 1 cut(s) 285
Sse9I AATT 4 cut(s) 184, 199, 396, 419
SspMI CTAG 1 cut(s) 297
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 3 cut(s) 104, 439, 527
TaiI ACGT 1 cut(s) 412
TaqI TCGA 3 cut(s) 84, 89, 285
TasI AATT 4 cut(s) 184, 199, 396, 419
TfiI GAWTC 2 cut(s) 86, 148
Tru1I TTAA 4 cut(s) 183, 267, 426, 441
Tru9I TTAA 4 cut(s) 183, 267, 426, 441
TscAI CASTG 1 cut(s) 532
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 2 cut(s) 353, 362
Tsp45I GTSAC 1 cut(s) 37
TspRI CASTG 1 cut(s) 532
XapI RAATTY 2 cut(s) 199, 396
XspI CTAG 1 cut(s) 297
Zsp2I ATGCAT 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.