Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004821

Physical Location & Seq

Genomic Coordinates Forward (+)

26707074 .. 26710878

Gene Structure 3805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g36390.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCTTTGCTTCGGCAACCTCTAGCTCCTCTACCTTGTCTTCAAAACCCACGTCACCTCGCCAAACGCAAACCAACAACTCTCTCTGTTTCCGGGCCTCTTTTCTCACTCTCTCTTTCCTTATCTCACACCCACCACACTCCCACCACCTCTTCAATCAGGACCCAAAAAAAGCTTTCAAATTTCGTGCTTCAATTCTCCTCCACAGCCCAGGAAGAAGCCATTGAAGAAAACCCAGTTCTTGTGGAGCCAGAAGCCGAAGAATTTTCTGACACAAGACTGCTGGCCCAGAATGTGCCTTGGACTTGTACCCCTGAAGACATTAGGACCATGTTCGAGAAGTACGGCACCGTCGTCGACGTTGAGCTTGCTATGTATAGCAAGAGTAGAAACAGGGGATTGGCGTTTGTGACTATGGCTTCACCAGAGGAGGCTCGCGTGGCTCTCAATGGTCTCGAATCGAGTGAAATGGATGGTCGTATTATAAAGATGGCTTACGCCAAGCCAAAAAAGAAGAAGATTCCCCCTCCTATGCCATCCAAGGAGATAACCTTTAATTTGTATGTGGAAAATTTGTCATACGAAGTAAGGGCAAAAGATCTGAGGGAGTTCTTCACCTCAGAGGGTACTGATATCGTTAACGCAGAAGTTGTATTCGAAGGTAATCCAAGAAGGTCCGCTGGATATGCATTTGTCAGCTTCAAGTCCAAGAAAGAGGCTGAGGCAGCCCTTGCTACTTTCCACGGAAAGTTGTTTATGGGAAGAAAAATTCGTGTGGCGCGTAGTAAACAATTTGTTAAAGTGCCAACAGTTAAAGAACCACCTGTAGAGAGTTCAGAGTTGGGTGATAATGCTACTGAACTGAGTTCTACTTCCAAGCAAGTGATAGCAGATGACAGCGAAAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

304

Amino Acids

33.8

Weight (kDa)

8.87

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	97 - 162	2.6e-13	RNA recognition motif
RRM_1	PF00076	187 - 258	1.6e-15	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09040 AT4G09040
fragaria_vesca	FvH4_5g36390 FvH4_5g36390
malus_domestica	MD08G1189600.v1.1 MD08G1189900.v1.1 MD15G1377200.v1.1
prunus_persica	Prupe.1G523800_v2.0.a1 Prupe.1G523800_v2.0.a1
pyrus_communis	pycom08g16310 pycom15g33680 pycom15g33730
rosa_chinensis	RchiOBHm_Chr7g0238361
rosa_laevigata	RLG00000000915 RLG00000000916 RLG00000000917
rosa_multiflora	Rmu_sc0001371.1_g000023
rosa_roxburghii	Rroxscaffold_3G00223080
rosa_rugosa	Rorug07G0311900 Rorug07G0312300
rosa_samantha	Rh7AG467000 Rh7BG437800 Rh7CG484700 Rh7CG485000 Rh7CG485100 Rh7DG453100 Rh7DG453400 Rh7DG453500
rosa_wichuraiana	Rw7G038680 Rw7G038720 Rw7G038790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	485
AccB1I	GGYRCC	1 cut(s)	347
AccI	GTMKAC	1 cut(s)	357
AccII	CGCG	2 cut(s)	438, 781
AciI	CCGC	1 cut(s)	678
AcsI	RAATTY	4 cut(s)	181, 263, 571, 768
AcuI	CTGAAG	1 cut(s)	336
AfaI	GTAC	3 cut(s)	310, 344, 628
AgsI	TTSAA	6 cut(s)	44, 156, 180, 194, 227, 703
AjiI	CACGTC	1 cut(s)	53
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	4 cut(s)	26, 175, 367, 699
AluI	AGCT	4 cut(s)	26, 175, 367, 699
Alw26I	GTCTC	1 cut(s)	458
AoxI	GGCC	2 cut(s)	95, 285
ApeKI	GCWGC	1 cut(s)	725
ApoI	RAATTY	4 cut(s)	181, 263, 571, 768
ArsI	GACNNNNNNTTYG	2 cut(s)	37, 69
AspLEI	GCGC	1 cut(s)	781
AspS9I	GGNCC	5 cut(s)	95, 162, 286, 327, 675
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	4 cut(s)	47, 414, 607, 857
AsuII	TTCGAA	1 cut(s)	657
AvaII	GGWCC	3 cut(s)	162, 327, 675
BanI	GGYRCC	1 cut(s)	347
BbsI	GAAGAC	2 cut(s)	32, 324
BbvCI	CCTCAGC	1 cut(s)	720
BbvI	GCAGC	1 cut(s)	737
BccI	CCATC	3 cut(s)	467, 484, 544
BceAI	ACGGC	1 cut(s)	361
BcgI	CGANNNNNNTGC	2 cut(s)	337, 371
BciT130I	CCWGG	1 cut(s)	212
BcnI	CCSGG	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	458
BfaI	CTAG	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	825
BglII	AGATCT	1 cut(s)	598
BisI	GCNGC	1 cut(s)	726
BlsI	GCNGC	1 cut(s)	727
Bme1390I	CCNGG	2 cut(s)	94, 212
Bme18I	GGWCC	3 cut(s)	162, 327, 675
BmgBI	CACGTC	1 cut(s)	53
BmgT120I	GGNCC	5 cut(s)	95, 162, 286, 327, 675
BmiI	GGNNCC	3 cut(s)	164, 249, 349
BmrFI	CCNGG	2 cut(s)	94, 212
BmrI	ACTGGG	1 cut(s)	230
BmuI	ACTGGG	1 cut(s)	230
BpiI	GAAGAC	2 cut(s)	32, 324
Bpu10I	CCTNAGC	1 cut(s)	720
Bpu14I	TTCGAA	1 cut(s)	657
BpuMI	CCSGG	1 cut(s)	94
BsaI	GGTCTC	1 cut(s)	458
BsaJI	CCNNGG	4 cut(s)	210, 299, 540, 742
Bse1I	ACTGG	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	4 cut(s)	210, 299, 540, 742
BseGI	GGATG	2 cut(s)	478, 536
BseMII	CTCAG	4 cut(s)	593, 633, 711, 854
BseNI	ACTGG	1 cut(s)	236
BseRI	GAGGAG	3 cut(s)	18, 190, 443
BseXI	GCAGC	1 cut(s)	737
Bsh1236I	CGCG	2 cut(s)	438, 781
BshFI	GGCC	2 cut(s)	97, 287
BshNI	GGYRCC	1 cut(s)	347
BsiSI	CCGG	1 cut(s)	93
BsmAI	GTCTC	1 cut(s)	458
BsnI	GGCC	2 cut(s)	97, 287
Bso31I	GGTCTC	1 cut(s)	458
Bsp119I	TTCGAA	1 cut(s)	657
Bsp143I	GATC	1 cut(s)	598
BspACI	CCGC	1 cut(s)	678
BspANI	GGCC	2 cut(s)	97, 287
BspCNI	CTCAG	4 cut(s)	594, 632, 712, 855
BspFNI	CGCG	2 cut(s)	438, 781
BspLI	GGNNCC	3 cut(s)	164, 249, 349
BspT104I	TTCGAA	1 cut(s)	657
BspT107I	GGYRCC	1 cut(s)	347
BspTNI	GGTCTC	1 cut(s)	458
BsrI	ACTGG	1 cut(s)	236
BssECI	CCNNGG	4 cut(s)	210, 299, 540, 742
BssMI	GATC	1 cut(s)	598
BssT1I	CCWWGG	2 cut(s)	299, 540
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	2 cut(s)	352, 811
Bst6I	CTCTTC	1 cut(s)	157
BstAPI	GCANNNNNTGC	1 cut(s)	731
BstBI	TTCGAA	1 cut(s)	657
BstC8I	GCNNGC	3 cut(s)	285, 369, 436
BstDEI	CTNAG	4 cut(s)	602, 619, 720, 863
BstDSI	CCRYGG	1 cut(s)	742
BstF5I	GGATG	2 cut(s)	478, 536
BstFNI	CGCG	2 cut(s)	438, 781
BstHHI	GCGC	1 cut(s)	781
BstKTI	GATC	1 cut(s)	601
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	1 cut(s)	598
BstMWI	GCNNNNNNNGC	4 cut(s)	440, 686, 725, 731
BstNI	CCWGG	1 cut(s)	212
BstSCI	CCNGG	2 cut(s)	92, 210
BstSFI	CTRYAG	1 cut(s)	825
BstUI	CGCG	2 cut(s)	438, 781
BstV1I	GCAGC	1 cut(s)	737
BstV2I	GAAGAC	2 cut(s)	32, 324
BstX2I	RGATCY	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	598
BsuRI	GGCC	2 cut(s)	97, 287
BtgI	CCRYGG	1 cut(s)	742
BtrI	CACGTC	1 cut(s)	53
BtsCI	GGATG	2 cut(s)	478, 536
Cac8I	GCNNGC	3 cut(s)	285, 369, 436
CfoI	GCGC	1 cut(s)	781
Cfr13I	GGNCC	5 cut(s)	95, 162, 286, 327, 675
Csp6I	GTAC	3 cut(s)	309, 343, 627
CviAII	CATG	1 cut(s)	331
CviQI	GTAC	3 cut(s)	309, 343, 627
DdeI	CTNAG	4 cut(s)	602, 619, 720, 863
DpnI	GATC	1 cut(s)	600
DpnII	GATC	1 cut(s)	598
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
Eco130I	CCWWGG	2 cut(s)	299, 540
Eco31I	GGTCTC	1 cut(s)	458
Eco32I	GATATC	1 cut(s)	634
Eco47I	GGWCC	3 cut(s)	162, 327, 675
Eco57I	CTGAAG	1 cut(s)	336
EcoO109I	RGGNCCY	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	210
EcoRV	GATATC	1 cut(s)	634
EcoT14I	CCWWGG	2 cut(s)	299, 540
EcoT22I	ATGCAT	1 cut(s)	691
ErhI	CCWWGG	2 cut(s)	299, 540
FaeI	CATG	1 cut(s)	334
FatI	CATG	1 cut(s)	330
FblI	GTMKAC	1 cut(s)	357
Fnu4HI	GCNGC	1 cut(s)	726
FokI	GGATG	2 cut(s)	485, 523
Fsp4HI	GCNGC	1 cut(s)	726
FspBI	CTAG	1 cut(s)	23
GlaI	GCGC	1 cut(s)	780
GluI	GCNGC	1 cut(s)	726
HaeIII	GGCC	2 cut(s)	97, 287
HapII	CCGG	1 cut(s)	93
HhaI	GCGC	1 cut(s)	781
Hin1II	CATG	1 cut(s)	334
Hin6I	GCGC	1 cut(s)	779
HinP1I	GCGC	1 cut(s)	779
HincII	GTYRAC	2 cut(s)	358, 640
HindII	GTYRAC	2 cut(s)	358, 640
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	2 cut(s)	458, 520
HpaI	GTTAAC	1 cut(s)	640
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	4 cut(s)	47, 414, 607, 857
Hpy166II	GTNNAC	3 cut(s)	358, 640, 788
Hpy188I	TCNGA	4 cut(s)	271, 603, 622, 838
Hpy188III	TCNNGA	3 cut(s)	160, 337, 455
Hpy8I	GTNNAC	3 cut(s)	358, 640, 788
Hpy99I	CGWCG	3 cut(s)	356, 359, 362
HpyAV	CCTTC	2 cut(s)	653, 666
HpyCH4III	ACNGT	2 cut(s)	352, 811
HpyCH4IV	ACGT	2 cut(s)	52, 360
HpyCH4V	TGCA	1 cut(s)	689
HpyF10VI	GCNNNNNNNGC	4 cut(s)	440, 686, 725, 731
HpyF3I	CTNAG	4 cut(s)	602, 619, 720, 863
HpySE526I	ACGT	2 cut(s)	52, 360
Hsp92II	CATG	1 cut(s)	334
HspAI	GCGC	1 cut(s)	779
KspAI	GTTAAC	1 cut(s)	640
Kzo9I	GATC	1 cut(s)	598
LmnI	GCTCC	2 cut(s)	31, 247
Lsp1109I	GCAGC	1 cut(s)	737
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	2 cut(s)	52, 360
MaeIII	GTNAC	2 cut(s)	53, 409
MalI	GATC	1 cut(s)	600
MboI	GATC	1 cut(s)	598
MflI	RGATCY	1 cut(s)	598
MluCI	AATT	7 cut(s)	181, 194, 263, 556, 571, 768, 791
Mph1103I	ATGCAT	1 cut(s)	691
MseI	TTAA	4 cut(s)	555, 639, 798, 813
MspA1I	CMGCKG	1 cut(s)	680
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	2 cut(s)	94, 212
MvaI	CCWGG	1 cut(s)	212
MvnI	CGCG	2 cut(s)	438, 781
MwoI	GCNNNNNNNGC	4 cut(s)	440, 686, 725, 731
NciI	CCSGG	1 cut(s)	94
NdeII	GATC	1 cut(s)	598
NlaIII	CATG	1 cut(s)	334
NlaIV	GGNNCC	3 cut(s)	164, 249, 349
NmuCI	GTSAC	2 cut(s)	53, 409
NsiI	ATGCAT	1 cut(s)	691
NspV	TTCGAA	1 cut(s)	657
PcsI	WCGNNNNNNNCGW	2 cut(s)	351, 778
PfeI	GAWTC	2 cut(s)	458, 520
PkrI	GCNGC	1 cut(s)	727
PpuMI	RGGWCCY	1 cut(s)	162
PsiI	TTATAA	1 cut(s)	485
Psp5II	RGGWCCY	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	3 cut(s)	164, 249, 349
PspPI	GGNCC	5 cut(s)	95, 162, 286, 327, 675
PspPPI	RGGWCCY	1 cut(s)	162
PsuI	RGATCY	1 cut(s)	598
RsaI	GTAC	3 cut(s)	310, 344, 628
RsaNI	GTAC	3 cut(s)	309, 343, 627
SalI	GTCGAC	1 cut(s)	356
SaqAI	TTAA	4 cut(s)	555, 639, 798, 813
SatI	GCNGC	1 cut(s)	726
Sau3AI	GATC	1 cut(s)	598
Sau96I	GGNCC	5 cut(s)	95, 162, 286, 327, 675
ScrFI	CCNGG	2 cut(s)	94, 212
SfcI	CTRYAG	1 cut(s)	825
SfuI	TTCGAA	1 cut(s)	657
SgrDI	CGTCGACG	1 cut(s)	356
SinI	GGWCC	3 cut(s)	162, 327, 675
Sse9I	AATT	7 cut(s)	181, 194, 263, 556, 571, 768, 791
SsiI	CCGC	1 cut(s)	678
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	2 cut(s)	92, 210
StyI	CCWWGG	2 cut(s)	299, 540
TaaI	ACNGT	2 cut(s)	352, 811
TaiI	ACGT	2 cut(s)	55, 363
TaqI	TCGA	5 cut(s)	336, 357, 456, 461, 657
TasI	AATT	7 cut(s)	181, 194, 263, 556, 571, 768, 791
TfiI	GAWTC	2 cut(s)	458, 520
Tru1I	TTAA	4 cut(s)	555, 639, 798, 813
Tru9I	TTAA	4 cut(s)	555, 639, 798, 813
TseFI	GTSAC	2 cut(s)	53, 409
TseI	GCWGC	1 cut(s)	725
Tsp45I	GTSAC	2 cut(s)	53, 409
TspGWI	ACGGA	1 cut(s)	759
VpaK11BI	GGWCC	3 cut(s)	162, 327, 675
XapI	RAATTY	4 cut(s)	181, 263, 571, 768
XmiI	GTMKAC	1 cut(s)	357
XspI	CTAG	1 cut(s)	23
Zsp2I	ATGCAT	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.