AT1G22800

methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013179
Physical Location & Seq
Forward (+)
8071789 .. 8074357
2569 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G22800.1

Sequence Viewer

Length: 1068 bp
ATGCGGAGGATCAATTCACTGTACGGAAGAATTGGTCTCCTAAAACGAGTACCCGAGAAATCTACGAAGCAAGCTCATACATTTCTCGCATCTCTCTCCTTCTCTACGGAAGGTGCTTATGGCGGTGACGGTGAGTTTCAGCAGAACAGCTCCAAAGTCAAGATCTTTGACCGAGACCTCAAGCGAATACATCGTGATCGAGCGGCGTGGCTTTCTCGCCAAAAAAACGATTCTTTTGTTGACGCTGTTGCAGATAATCTACTTGATCGCTTAGAGGATTGTAAGAAGAGTTTTCCCACTGCATTTTGTTTGGGAGGATCTCTTGGTGCTGTTAAGAGATTACTACGTGGTCGCGGTGGGATTGAGAAGCTTATCATGATGGATACTTCATATGACATGATTAAGTCATGTAGAGATGCTCAAGACGATTCACTCGATAACTCCATTGAAACCTCTTACTTTGTTGGTGATGAAGAGTTTCTGCCAGTCAAAGAGAGTTCGGTTGATTTGATCATTAGTTCGTTGGGGCTTCACTGGACAAATGATCTTCCTGGATCCATGATACAGTGCAAGCTAGCACTGAAGCCGGATGGCTTATTTTTAGCAGCAATTCTTGGTGGAGAAACCTTAAAGGAGCTGAGAATAGCATGCACTTTGGCTCACATGGAGCGGGAAGGAGGGATTAGTCCTCGGCTATCACCTTTGGCACAGGTTAGGGACGCAGGGAATCTGTTGACCAGGGCGGGTTTTAGTCTTCCTGGTGTTGATGTTGATGAATATGTAGTTAAATACAAGAGAGCGATGGATCTTATAGAGCATCTTCGTGCGATGGGTGAAACCAATGCTCTTCTCGAGAGAAACAAGATTTTGAATCGTGAAACTGCTGTTGCCACGGCAGCCATATATGACTCCATGTTTGCCACAGAGGACGGCACTATACCCGCTACTTTTCAGGTGATTTACATGACAGGATGGAGAGAACATTCGTCTCACCCGCAGGCCAAACGAAGAGGTTCAGCCACCGTATCCTTCACGGATCTCCAAAAGCAATTTGGCGGACAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

355

Amino Acids

39.37

Weight (kDa)

7.65

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_11 PF08241 104 - 201 3.6e-10 Methyltransferase domain
Methyltransf_25 PF13649 105 - 198 7.2e-07 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013179)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22800
fragaria_vesca FvH4_5g33060
malus_domestica MD04G1240000.v1.1 MD08G1215200.v1.1 MD15G1399100.v1.1
prunus_persica Prupe.1G530500_v2.0.a1 Prupe.1G530500_v2.0.a1 Prupe.1G530500_v2.0.a1
pyrus_communis pycom08g18630 pycom15g35810
rosa_chinensis RchiOBHm_Chr7g0231231
rosa_laevigata RLG00000001427
rosa_multiflora Rmu_sc0004571.1_g000020
rosa_roxburghii Rroxscaffold_3G00229420
rosa_rugosa Rorug07G0265200
rosa_samantha Rh7BG394200 Rh7CG438300
rosa_wichuraiana Rw7G034630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 203, 670
AccII CGCG 1 cut(s) 354
AciI CCGC 9 cut(s) 4, 123, 203, 354, 670, 743, 942, 995, 1056
AclWI GGATC 6 cut(s) 17, 325, 549, 562, 813, 1044
AcuI CTGAAG 1 cut(s) 602
AfaI GTAC 2 cut(s) 23, 51
AgsI TTSAA 2 cut(s) 449, 871
AjnI CCWGG 3 cut(s) 550, 737, 757
AluBI AGCT 5 cut(s) 74, 150, 370, 574, 637
AluI AGCT 5 cut(s) 74, 150, 370, 574, 637
Alw26I GTCTC 3 cut(s) 41, 168, 993
AlwI GGATC 6 cut(s) 17, 325, 549, 562, 813, 1044
Ama87I CYCGRG 2 cut(s) 53, 851
AoxI GGCC 1 cut(s) 999
ApeKI GCWGC 2 cut(s) 605, 896
ArsI GACNNNNNNTTYG 2 cut(s) 899, 931
Asp700I GAANNNNTTC 2 cut(s) 477, 1012
AsuHPI GGTGA 7 cut(s) 137, 143, 479, 690, 845, 967, 983
AsuNHI GCTAGC 1 cut(s) 574
AvaI CYCGRG 2 cut(s) 53, 851
BamHI GGATCC 1 cut(s) 554
BbsI GAAGAC 1 cut(s) 746
BbvI GCAGC 2 cut(s) 617, 908
BccI CCATC 5 cut(s) 373, 584, 796, 823, 966
BceAI ACGGC 2 cut(s) 909, 946
BciT130I CCWGG 3 cut(s) 552, 739, 759
BciVI GTATCC 2 cut(s) 376, 1036
BclI TGATCA 1 cut(s) 510
BcoDI GTCTC 3 cut(s) 41, 168, 993
BfaI CTAG 1 cut(s) 575
BfuI GTATCC 2 cut(s) 376, 1036
BglII AGATCT 1 cut(s) 162
BisI GCNGC 3 cut(s) 204, 606, 897
BlsI GCNGC 3 cut(s) 205, 607, 898
Bme1390I CCNGG 3 cut(s) 552, 739, 759
BmeT110I CYCGRG 2 cut(s) 53, 851
BmiI GGNNCC 1 cut(s) 556
BmrFI CCNGG 3 cut(s) 552, 739, 759
BmsI GCATC 3 cut(s) 98, 406, 826
BmtI GCTAGC 1 cut(s) 578
BpiI GAAGAC 1 cut(s) 746
BpuEI CTTGAG 2 cut(s) 164, 405
BsaAI YACGTR 1 cut(s) 347
BsaI GGTCTC 2 cut(s) 41, 168
BsaJI CCNNGG 3 cut(s) 689, 738, 891
Bse1I ACTGG 2 cut(s) 485, 539
BseBI CCWGG 3 cut(s) 552, 739, 759
BseDI CCNNGG 3 cut(s) 689, 738, 891
BseGI GGATG 2 cut(s) 595, 977
BseMII CTCAG 1 cut(s) 629
BseNI ACTGG 2 cut(s) 485, 539
BseXI GCAGC 2 cut(s) 617, 908
Bsh1236I CGCG 1 cut(s) 354
BshFI GGCC 1 cut(s) 1001
BsiHKCI CYCGRG 2 cut(s) 53, 851
BsiSI CCGG 1 cut(s) 587
BslFI GGGAC 1 cut(s) 731
BsmAI GTCTC 3 cut(s) 41, 168, 993
BsmBI CGTCTC 1 cut(s) 993
BsmFI GGGAC 1 cut(s) 731
BsnI GGCC 1 cut(s) 1001
Bso31I GGTCTC 2 cut(s) 41, 168
BsoBI CYCGRG 2 cut(s) 53, 851
BspACI CCGC 9 cut(s) 4, 123, 203, 354, 670, 743, 942, 995, 1056
BspANI GGCC 1 cut(s) 1001
BspCNI CTCAG 1 cut(s) 630
BspFNI CGCG 1 cut(s) 354
BspHI TCATGA 1 cut(s) 375
BspLI GGNNCC 1 cut(s) 556
BspOI GCTAGC 1 cut(s) 578
BspPI GGATC 6 cut(s) 17, 325, 549, 562, 813, 1044
BspQI GCTCTTC 1 cut(s) 852
BspTNI GGTCTC 2 cut(s) 41, 168
BsrBI CCGCTC 2 cut(s) 203, 670
BsrI ACTGG 2 cut(s) 485, 539
BssECI CCNNGG 3 cut(s) 689, 738, 891
Bst2UI CCWGG 3 cut(s) 552, 739, 759
Bst4CI ACNGT 4 cut(s) 21, 131, 567, 1024
Bst6I CTCTTC 4 cut(s) 281, 468, 852, 1003
BstBAI YACGTR 1 cut(s) 347
BstC8I GCNNGC 5 cut(s) 72, 572, 576, 649, 999
BstDEI CTNAG 2 cut(s) 271, 638
BstDSI CCRYGG 1 cut(s) 891
BstF5I GGATG 2 cut(s) 595, 977
BstFNI CGCG 1 cut(s) 354
BstMAI GTCTC 3 cut(s) 41, 168, 993
BstMWI GCNNNNNNNGC 1 cut(s) 896
BstNI CCWGG 3 cut(s) 552, 739, 759
BstNSI RCATGY 1 cut(s) 651
BstSCI CCNGG 3 cut(s) 550, 737, 757
BstUI CGCG 1 cut(s) 354
BstV1I GCAGC 2 cut(s) 617, 908
BstV2I GAAGAC 1 cut(s) 746
BstX2I RGATCY 5 cut(s) 162, 317, 554, 805, 1036
BstYI RGATCY 5 cut(s) 162, 317, 554, 805, 1036
BsuI GTATCC 2 cut(s) 376, 1036
BsuRI GGCC 1 cut(s) 1001
BtgI CCRYGG 1 cut(s) 891
BtgZI GCGATG 2 cut(s) 815, 842
BtsCI GGATG 2 cut(s) 595, 977
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 5 cut(s) 17, 297, 532, 572, 578
Cac8I GCNNGC 5 cut(s) 72, 572, 576, 649, 999
CciI TCATGA 1 cut(s) 375
CseI GACGC 2 cut(s) 251, 728
Csp6I GTAC 2 cut(s) 22, 50
CviAII CATG 8 cut(s) 376, 397, 408, 559, 648, 664, 913, 964
CviQI GTAC 2 cut(s) 22, 50
DdeI CTNAG 2 cut(s) 271, 638
Eam1104I CTCTTC 4 cut(s) 281, 468, 852, 1003
EarI CTCTTC 4 cut(s) 281, 468, 852, 1003
Eco31I GGTCTC 2 cut(s) 41, 168
Eco57I CTGAAG 1 cut(s) 602
Eco88I CYCGRG 2 cut(s) 53, 851
EcoRII CCWGG 3 cut(s) 550, 737, 757
Esp3I CGTCTC 1 cut(s) 993
FaeI CATG 8 cut(s) 379, 400, 411, 562, 651, 667, 916, 967
FaqI GGGAC 1 cut(s) 731
FatI CATG 8 cut(s) 375, 396, 407, 558, 647, 663, 912, 963
FauI CCCGC 4 cut(s) 663, 736, 949, 1002
FauNDI CATATG 1 cut(s) 391
FbaI TGATCA 1 cut(s) 510
Fnu4HI GCNGC 3 cut(s) 204, 606, 897
FokI GGATG 2 cut(s) 602, 984
Fsp4HI GCNGC 3 cut(s) 204, 606, 897
FspBI CTAG 1 cut(s) 575
GluI GCNGC 3 cut(s) 204, 606, 897
HaeIII GGCC 1 cut(s) 1001
HapII CCGG 1 cut(s) 587
HgaI GACGC 2 cut(s) 251, 728
Hin1II CATG 8 cut(s) 379, 400, 411, 562, 651, 667, 916, 967
HincII GTYRAC 2 cut(s) 241, 735
HindII GTYRAC 2 cut(s) 241, 735
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 5 cut(s) 230, 428, 727, 871, 908
HpaII CCGG 1 cut(s) 587
HphI GGTGA 7 cut(s) 137, 143, 479, 690, 845, 967, 983
Hpy166II GTNNAC 2 cut(s) 241, 735
Hpy188III TCNNGA 8 cut(s) 160, 194, 376, 422, 851, 853, 875, 1065
Hpy8I GTNNAC 2 cut(s) 241, 735
HpyAV CCTTC 4 cut(s) 104, 109, 668, 1039
HpyCH4III ACNGT 4 cut(s) 21, 131, 567, 1024
HpyCH4IV ACGT 1 cut(s) 346
HpyCH4V TGCA 4 cut(s) 251, 302, 570, 651
HpyF10VI GCNNNNNNNGC 1 cut(s) 896
HpyF3I CTNAG 2 cut(s) 271, 638
HpySE526I ACGT 1 cut(s) 346
Hsp92II CATG 8 cut(s) 379, 400, 411, 562, 651, 667, 916, 967
Ksp22I TGATCA 1 cut(s) 510
LguI GCTCTTC 1 cut(s) 852
LmnI GCTCC 3 cut(s) 155, 634, 667
Lsp1109I GCAGC 2 cut(s) 617, 908
LweI GCATC 3 cut(s) 98, 406, 826
MaeI CTAG 1 cut(s) 575
MaeII ACGT 1 cut(s) 346
MaeIII GTNAC 1 cut(s) 125
MbiI CCGCTC 2 cut(s) 203, 670
MboII GAAGA 8 cut(s) 39, 298, 485, 539, 746, 812, 839, 1020
MflI RGATCY 5 cut(s) 162, 317, 554, 805, 1036
MluCI AATT 4 cut(s) 13, 30, 609, 1049
MlyI GAGTC 1 cut(s) 902
MnlI CCTC 8 cut(s) 188, 268, 308, 463, 671, 699, 919, 1004
MroXI GAANNNNTTC 2 cut(s) 477, 1012
MseI TTAA 4 cut(s) 333, 402, 629, 786
MslI CAYNNNNRTG 1 cut(s) 822
MspI CCGG 1 cut(s) 587
MspR9I CCNGG 3 cut(s) 552, 739, 759
MvaI CCWGG 3 cut(s) 552, 739, 759
MvnI CGCG 1 cut(s) 354
MwoI GCNNNNNNNGC 1 cut(s) 896
NdeI CATATG 1 cut(s) 391
NheI GCTAGC 1 cut(s) 574
NlaIII CATG 8 cut(s) 379, 400, 411, 562, 651, 667, 916, 967
NlaIV GGNNCC 1 cut(s) 556
NmeAIII GCCGAG 1 cut(s) 670
NmuCI GTSAC 1 cut(s) 125
NspI RCATGY 1 cut(s) 651
PaeI GCATGC 1 cut(s) 651
PaeR7I CTCGAG 1 cut(s) 851
PagI TCATGA 1 cut(s) 375
PciSI GCTCTTC 1 cut(s) 852
PcsI WCGNNNNNNNCGW 1 cut(s) 432
PdmI GAANNNNTTC 2 cut(s) 477, 1012
PfeI GAWTC 4 cut(s) 230, 428, 727, 871
PfoI TCCNGGA 1 cut(s) 550
PkrI GCNGC 3 cut(s) 205, 607, 898
PleI GAGTC 1 cut(s) 902
PpsI GAGTC 1 cut(s) 902
Ppu21I YACGTR 1 cut(s) 347
Psp6I CCWGG 3 cut(s) 550, 737, 757
PspGI CCWGG 3 cut(s) 550, 737, 757
PspN4I GGNNCC 1 cut(s) 556
PsuI RGATCY 5 cut(s) 162, 317, 554, 805, 1036
RsaI GTAC 2 cut(s) 23, 51
RsaNI GTAC 2 cut(s) 22, 50
RseI CAYNNNNRTG 1 cut(s) 822
SapI GCTCTTC 1 cut(s) 852
SaqAI TTAA 4 cut(s) 333, 402, 629, 786
SatI GCNGC 3 cut(s) 204, 606, 897
SchI GAGTC 1 cut(s) 902
ScrFI CCNGG 3 cut(s) 552, 739, 759
SfaNI GCATC 3 cut(s) 98, 406, 826
Sfr274I CTCGAG 1 cut(s) 851
SlaI CTCGAG 1 cut(s) 851
SmiMI CAYNNNNRTG 1 cut(s) 822
SmlI CTYRAG 3 cut(s) 179, 420, 851
SmoI CTYRAG 3 cut(s) 179, 420, 851
SphI GCATGC 1 cut(s) 651
Sse9I AATT 4 cut(s) 13, 30, 609, 1049
SsiI CCGC 9 cut(s) 4, 123, 203, 354, 670, 743, 942, 995, 1056
SspMI CTAG 1 cut(s) 575
StyD4I CCNGG 3 cut(s) 550, 737, 757
TaaI ACNGT 4 cut(s) 21, 131, 567, 1024
TaiI ACGT 1 cut(s) 349
TaqI TCGA 3 cut(s) 199, 435, 852
TaqII GACCGA 1 cut(s) 186
TasI AATT 4 cut(s) 13, 30, 609, 1049
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 4 cut(s) 230, 428, 727, 871
Tru1I TTAA 4 cut(s) 333, 402, 629, 786
Tru9I TTAA 4 cut(s) 333, 402, 629, 786
TscAI CASTG 5 cut(s) 24, 304, 539, 572, 585
TseFI GTSAC 1 cut(s) 125
TseI GCWGC 2 cut(s) 605, 896
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 3 cut(s) 378, 486, 789
TspGWI ACGGA 3 cut(s) 39, 122, 1049
TspRI CASTG 5 cut(s) 24, 304, 539, 572, 585
XceI RCATGY 1 cut(s) 651
XcmI CCANNNNNNNNNTGG 1 cut(s) 1049
XhoI CTCGAG 1 cut(s) 851
XmnI GAANNNNTTC 2 cut(s) 477, 1012
XspI CTAG 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.