Prupe.1G530500_v2.0.a1

Methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013179
Physical Location & Seq
Forward (+)
43363991 .. 43371569
7579 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G530500.1

Sequence Viewer

Length: 1035 bp
ATGAGAAGCTTGTCTTCTCTCTGCCGGAGTAGCTGGTTATCGAGGACAAGAAGAGAAGCTCCACACTCAATCTTATTCTCAAAAACTCTCTGTACTGACAACAGTGATGGGGTTCAAAGCTCAAGGATCAAGATCTTCGATCGCCATTTCAGACGCAAACAGCTTGATCGAGCTGCTTGGTTGATGCGTTCGAAGGATTCTTTTGTTGATACTGTTGCTGAGAATCTATTAGATCGTTTGGAGGATTGCAAGAAAACATTTCCGACAGCATTATGTTTGGGAGGTTCGTTGGAAGCTGTCAGGCGTTTGTTACGTGGTCGTGGTGCCATCGAAAGGCTCATTATGATGTCTACATCACATGATATGGTAAAACTATGTAGAGATGCTGAGCATGGCATACAGAGTGAAAACATTGAAACATCGTTTATGGTTGGTGACGAAGAGTTTTTACCTGTCAAAGAAAGTTCTCTAGATCTGGTAATAAGTTGCTTGGGCCTTCACTGGACAAATGATCTTCCAGGAGCCATGATACAGAGCAGATTGGCATTGAAGCCAGATGGCCTATTTTTAGCTGCAATTCTTGGTGGAGAAACCTTAAAAGAGCTGAGAATAGCATGCACAGTGGCACAAATGGAACGTGAAGGAGGCATCAGTCCACGAATATCACCTTTGGCACAAGTGCGGGATGCGGGCAATCTTTTGACCAGGGCAGGTTTTTCCCTTCCAGGTGTTGATGTTGACGAATTTGTAGTCAGATATCCAAGTGCCCTGGATCTCGTAGAACATCTGCGTGCCATGGGTGAAACCAATGCCCTTTTACAAAGGAACACTATTCTAAAGAGGGAAACTGCTCTGGCCACAGCTGCAATTTATGATTCAATGTTTGCAGCAGAAGATGGCACCATCCCTGCAACCTTCCAGGTTATTTATATGACAGGGTGGAGGGACCATCCATCTCAGCAGAGGGCAAAAAGGAGGGGCTCTGCAACTGTGTCCTTTCAGGACATCCATAAGCAATTTGGAAGTGAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

345

Amino Acids

38.37

Weight (kDa)

8.16

Isoelectric Point (pI)

56.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013179)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22800
fragaria_vesca FvH4_5g33060
malus_domestica MD04G1240000.v1.1 MD08G1215200.v1.1 MD15G1399100.v1.1
prunus_persica Prupe.1G530500_v2.0.a1 Prupe.1G530500_v2.0.a1 Prupe.1G530500_v2.0.a1
pyrus_communis pycom08g18630 pycom15g35810
rosa_chinensis RchiOBHm_Chr7g0231231
rosa_laevigata RLG00000001427
rosa_multiflora Rmu_sc0004571.1_g000020
rosa_roxburghii Rroxscaffold_3G00229420
rosa_rugosa Rorug07G0265200
rosa_samantha Rh7BG394200 Rh7CG438300
rosa_wichuraiana Rw7G034630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 701
AccB1I GGYRCC 2 cut(s) 323, 899
AccI GTMKAC 1 cut(s) 350
AciI CCGC 2 cut(s) 682, 689
AclWI GGATC 2 cut(s) 134, 780
AcoI YGGCCR 1 cut(s) 855
AcsI RAATTY 1 cut(s) 743
AfaI GTAC 1 cut(s) 94
AfiI CCNNNNNNNGG 1 cut(s) 333
AgsI TTSAA 4 cut(s) 116, 416, 550, 879
AjnI CCWGG 5 cut(s) 517, 704, 724, 768, 918
AlwI GGATC 2 cut(s) 134, 780
AoxI GGCC 3 cut(s) 493, 559, 855
ApeKI GCWGC 4 cut(s) 173, 572, 863, 887
ApoI RAATTY 1 cut(s) 743
ArsI GACNNNNNNTTYG 2 cut(s) 735, 767
AspS9I GGNCC 2 cut(s) 493, 946
AsuHPI GGTGA 3 cut(s) 446, 657, 812
AsuII TTCGAA 1 cut(s) 191
AvaII GGWCC 1 cut(s) 946
BaeGI GKGCMC 1 cut(s) 769
BalI TGGCCA 1 cut(s) 857
BanI GGYRCC 2 cut(s) 323, 899
BanII GRGCYC 1 cut(s) 983
BarI GAAGNNNNNNTAC 2 cut(s) 432, 464
BbsI GAAGAC 1 cut(s) 6
BbvI GCAGC 4 cut(s) 160, 559, 850, 899
BccI CCATC 7 cut(s) 101, 335, 551, 890, 911, 957, 961
BciT130I CCWGG 5 cut(s) 519, 706, 726, 770, 920
BfaI CTAG 1 cut(s) 470
BfuAI ACCTGC 1 cut(s) 701
BglII AGATCT 2 cut(s) 132, 472
BisI GCNGC 4 cut(s) 174, 573, 864, 888
BlpI GCTNAGC 1 cut(s) 387
BlsI GCNGC 4 cut(s) 175, 574, 865, 889
Bme1390I CCNGG 5 cut(s) 519, 706, 726, 770, 920
Bme18I GGWCC 1 cut(s) 946
BmgT120I GGNCC 2 cut(s) 493, 946
BmiI GGNNCC 4 cut(s) 325, 523, 901, 947
BmrFI CCNGG 5 cut(s) 519, 706, 726, 770, 920
BmsI GCATC 4 cut(s) 174, 373, 657, 676
BpiI GAAGAC 1 cut(s) 6
Bpu1102I GCTNAGC 1 cut(s) 387
Bpu14I TTCGAA 1 cut(s) 191
BpuEI CTTGAG 1 cut(s) 106
BsaAI YACGTR 1 cut(s) 314
BsaBI GATNNNNATC 1 cut(s) 131
BsaJI CCNNGG 3 cut(s) 705, 768, 795
Bsc4I CCNNNNNNNGG 1 cut(s) 333
Bse1I ACTGG 1 cut(s) 506
Bse8I GATNNNNATC 1 cut(s) 131
BseBI CCWGG 5 cut(s) 519, 706, 726, 770, 920
BseDI CCNNGG 3 cut(s) 705, 768, 795
BseGI GGATG 4 cut(s) 691, 903, 949, 1005
BseJI GATNNNNATC 1 cut(s) 131
BseLI CCNNNNNNNGG 1 cut(s) 333
BseMII CTCAG 4 cut(s) 210, 378, 596, 971
BseNI ACTGG 1 cut(s) 506
BseSI GKGCMC 1 cut(s) 769
BseXI GCAGC 4 cut(s) 160, 559, 850, 899
Bsh1285I CGRYCG 1 cut(s) 142
BshFI GGCC 3 cut(s) 495, 561, 857
BshNI GGYRCC 2 cut(s) 323, 899
BsiEI CGRYCG 1 cut(s) 142
BsiSI CCGG 1 cut(s) 25
BslFI GGGAC 1 cut(s) 959
BslI CCNNNNNNNGG 1 cut(s) 333
BsmFI GGGAC 1 cut(s) 959
BsnI GGCC 3 cut(s) 495, 561, 857
Bsp119I TTCGAA 1 cut(s) 191
Bsp1286I GDGCHC 2 cut(s) 769, 983
Bsp143I GATC 8 cut(s) 126, 132, 139, 166, 232, 472, 511, 772
Bsp1720I GCTNAGC 1 cut(s) 387
Bsp19I CCATGG 1 cut(s) 795
BspACI CCGC 2 cut(s) 682, 689
BspANI GGCC 3 cut(s) 495, 561, 857
BspCNI CTCAG 4 cut(s) 211, 379, 597, 970
BspLI GGNNCC 4 cut(s) 325, 523, 901, 947
BspMI ACCTGC 1 cut(s) 701
BspPI GGATC 2 cut(s) 134, 780
BspT104I TTCGAA 1 cut(s) 191
BspT107I GGYRCC 2 cut(s) 323, 899
BsrI ACTGG 1 cut(s) 506
BssECI CCNNGG 3 cut(s) 705, 768, 795
BssMI GATC 8 cut(s) 126, 132, 139, 166, 232, 472, 511, 772
BssT1I CCWWGG 1 cut(s) 795
Bst2UI CCWGG 5 cut(s) 519, 706, 726, 770, 920
Bst4CI ACNGT 4 cut(s) 104, 214, 622, 991
Bst6I CTCTTC 2 cut(s) 46, 435
BstBAI YACGTR 1 cut(s) 314
BstBI TTCGAA 1 cut(s) 191
BstC8I GCNNGC 3 cut(s) 616, 691, 792
BstDEI CTNAG 4 cut(s) 219, 387, 605, 957
BstDSI CCRYGG 1 cut(s) 795
BstF5I GGATG 4 cut(s) 691, 903, 949, 1005
BstKTI GATC 8 cut(s) 129, 135, 142, 169, 235, 475, 514, 775
BstMBI GATC 8 cut(s) 126, 132, 139, 166, 232, 472, 511, 772
BstMCI CGRYCG 1 cut(s) 142
BstMWI GCNNNNNNNGC 2 cut(s) 30, 863
BstNI CCWGG 5 cut(s) 519, 706, 726, 770, 920
BstNSI RCATGY 1 cut(s) 618
BstSCI CCNGG 5 cut(s) 517, 704, 724, 768, 918
BstSLI GKGCMC 1 cut(s) 769
BstV1I GCAGC 4 cut(s) 160, 559, 850, 899
BstV2I GAAGAC 1 cut(s) 6
BstX2I RGATCY 3 cut(s) 132, 472, 772
BstYI RGATCY 3 cut(s) 132, 472, 772
BsuRI GGCC 3 cut(s) 495, 561, 857
BtgI CCRYGG 1 cut(s) 795
BtsCI GGATG 4 cut(s) 691, 903, 949, 1005
BtsIMutI CAGTG 3 cut(s) 109, 499, 627
BveI ACCTGC 1 cut(s) 701
Cac8I GCNNGC 3 cut(s) 616, 691, 792
Cfr13I GGNCC 2 cut(s) 493, 946
CseI GACGC 1 cut(s) 162
Csp6I GTAC 1 cut(s) 93
CviAII CATG 5 cut(s) 359, 392, 526, 615, 796
CviQI GTAC 1 cut(s) 93
DdeI CTNAG 4 cut(s) 219, 387, 605, 957
DpnI GATC 8 cut(s) 128, 134, 141, 168, 234, 474, 513, 774
DpnII GATC 8 cut(s) 126, 132, 139, 166, 232, 472, 511, 772
EaeI YGGCCR 1 cut(s) 855
Eam1104I CTCTTC 2 cut(s) 46, 435
EarI CTCTTC 2 cut(s) 46, 435
Eco130I CCWWGG 1 cut(s) 795
Eco24I GRGCYC 1 cut(s) 983
Eco32I GATATC 1 cut(s) 758
Eco47I GGWCC 1 cut(s) 946
EcoRII CCWGG 5 cut(s) 517, 704, 724, 768, 918
EcoRV GATATC 1 cut(s) 758
EcoT14I CCWWGG 1 cut(s) 795
EcoT38I GRGCYC 1 cut(s) 983
ErhI CCWWGG 1 cut(s) 795
FaeI CATG 5 cut(s) 362, 395, 529, 618, 799
FalI AAGNNNNNCTT 1 cut(s) 30
FaqI GGGAC 1 cut(s) 959
FatI CATG 5 cut(s) 358, 391, 525, 614, 795
FauI CCCGC 2 cut(s) 675, 682
FblI GTMKAC 1 cut(s) 350
Fnu4HI GCNGC 4 cut(s) 174, 573, 864, 888
FokI GGATG 4 cut(s) 698, 890, 936, 992
FriOI GRGCYC 1 cut(s) 983
Fsp4HI GCNGC 4 cut(s) 174, 573, 864, 888
FspBI CTAG 1 cut(s) 470
GluI GCNGC 4 cut(s) 174, 573, 864, 888
HaeIII GGCC 3 cut(s) 495, 561, 857
HapII CCGG 1 cut(s) 25
HgaI GACGC 1 cut(s) 162
Hin1II CATG 5 cut(s) 362, 395, 529, 618, 799
HincII GTYRAC 1 cut(s) 739
HindII GTYRAC 1 cut(s) 739
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 3 cut(s) 197, 223, 875
HpaII CCGG 1 cut(s) 25
HphI GGTGA 3 cut(s) 446, 657, 812
Hpy166II GTNNAC 3 cut(s) 351, 656, 739
Hpy188I TCNGA 3 cut(s) 152, 264, 755
Hpy188III TCNNGA 3 cut(s) 130, 470, 1001
Hpy8I GTNNAC 3 cut(s) 351, 656, 739
HpyAV CCTTC 5 cut(s) 187, 506, 635, 731, 925
HpyCH4III ACNGT 4 cut(s) 104, 214, 622, 991
HpyCH4IV ACGT 2 cut(s) 313, 637
HpyCH4V TGCA 7 cut(s) 249, 575, 618, 866, 887, 911, 986
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 863
HpyF3I CTNAG 4 cut(s) 219, 387, 605, 957
HpySE526I ACGT 2 cut(s) 313, 637
Hsp92II CATG 5 cut(s) 362, 395, 529, 618, 799
Kzo9I GATC 8 cut(s) 126, 132, 139, 166, 232, 472, 511, 772
LmnI GCTCC 2 cut(s) 64, 521
Lsp1109I GCAGC 4 cut(s) 160, 559, 850, 899
LweI GCATC 4 cut(s) 174, 373, 657, 676
MaeI CTAG 1 cut(s) 470
MaeII ACGT 2 cut(s) 313, 637
MaeIII GTNAC 2 cut(s) 309, 434
MalI GATC 8 cut(s) 128, 134, 141, 168, 234, 474, 513, 774
MboI GATC 8 cut(s) 126, 132, 139, 166, 232, 472, 511, 772
MboII GAAGA 6 cut(s) 6, 63, 127, 452, 506, 905
MflI RGATCY 3 cut(s) 132, 472, 772
MhlI GDGCHC 2 cut(s) 769, 983
MlsI TGGCCA 1 cut(s) 857
MluCI AATT 4 cut(s) 576, 743, 867, 1016
MluNI TGGCCA 1 cut(s) 857
MmeI TCCRAC 2 cut(s) 270, 287
MnlI CCTC 8 cut(s) 36, 235, 275, 638, 834, 936, 957, 969
Mox20I TGGCCA 1 cut(s) 857
MscI TGGCCA 1 cut(s) 857
MseI TTAA 1 cut(s) 596
MslI CAYNNNNRTG 2 cut(s) 344, 789
Msp20I TGGCCA 1 cut(s) 857
MspA1I CMGCKG 1 cut(s) 863
MspI CCGG 1 cut(s) 25
MspR9I CCNGG 5 cut(s) 519, 706, 726, 770, 920
MvaI CCWGG 5 cut(s) 519, 706, 726, 770, 920
MwoI GCNNNNNNNGC 2 cut(s) 30, 863
NcoI CCATGG 1 cut(s) 795
NdeII GATC 8 cut(s) 126, 132, 139, 166, 232, 472, 511, 772
NlaIII CATG 5 cut(s) 362, 395, 529, 618, 799
NlaIV GGNNCC 4 cut(s) 325, 523, 901, 947
NmuCI GTSAC 1 cut(s) 434
NspI RCATGY 1 cut(s) 618
NspV TTCGAA 1 cut(s) 191
PaeI GCATGC 1 cut(s) 618
PfeI GAWTC 3 cut(s) 197, 223, 875
PfoI TCCNGGA 1 cut(s) 517
PkrI GCNGC 4 cut(s) 175, 574, 865, 889
Ple19I CGATCG 1 cut(s) 142
Ppu21I YACGTR 1 cut(s) 314
Psp6I CCWGG 5 cut(s) 517, 704, 724, 768, 918
PspGI CCWGG 5 cut(s) 517, 704, 724, 768, 918
PspN4I GGNNCC 4 cut(s) 325, 523, 901, 947
PspPI GGNCC 2 cut(s) 493, 946
PsuI RGATCY 3 cut(s) 132, 472, 772
PvuI CGATCG 1 cut(s) 142
PvuII CAGCTG 1 cut(s) 863
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
RseI CAYNNNNRTG 2 cut(s) 344, 789
SaqAI TTAA 1 cut(s) 596
SatI GCNGC 4 cut(s) 174, 573, 864, 888
Sau3AI GATC 8 cut(s) 126, 132, 139, 166, 232, 472, 511, 772
Sau96I GGNCC 2 cut(s) 493, 946
ScrFI CCNGG 5 cut(s) 519, 706, 726, 770, 920
SduI GDGCHC 2 cut(s) 769, 983
SfaNI GCATC 4 cut(s) 174, 373, 657, 676
SfuI TTCGAA 1 cut(s) 191
SinI GGWCC 1 cut(s) 946
SmiMI CAYNNNNRTG 2 cut(s) 344, 789
SmlI CTYRAG 1 cut(s) 121
SmoI CTYRAG 1 cut(s) 121
SphI GCATGC 1 cut(s) 618
Sse9I AATT 4 cut(s) 576, 743, 867, 1016
SsiI CCGC 2 cut(s) 682, 689
SspMI CTAG 1 cut(s) 470
StyD4I CCNGG 5 cut(s) 517, 704, 724, 768, 918
StyI CCWWGG 1 cut(s) 795
TaaI ACNGT 4 cut(s) 104, 214, 622, 991
TaiI ACGT 2 cut(s) 316, 640
TaqI TCGA 5 cut(s) 41, 138, 169, 191, 330
TasI AATT 4 cut(s) 576, 743, 867, 1016
TatI WGTACW 1 cut(s) 92
TfiI GAWTC 3 cut(s) 197, 223, 875
Tru1I TTAA 1 cut(s) 596
Tru9I TTAA 1 cut(s) 596
TscAI CASTG 3 cut(s) 109, 506, 627
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 4 cut(s) 173, 572, 863, 887
Tsp45I GTSAC 1 cut(s) 434
TspRI CASTG 3 cut(s) 109, 506, 627
VpaK11BI GGWCC 1 cut(s) 946
XapI RAATTY 1 cut(s) 743
XbaI TCTAGA 1 cut(s) 469
XceI RCATGY 1 cut(s) 618
XcmI CCANNNNNNNNNTGG 1 cut(s) 1016
XmiI GTMKAC 1 cut(s) 350
XspI CTAG 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.