Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004571.1

Orthogroup ID

OG0013179

Physical Location & Seq

Genomic Coordinates Reverse (-)

104362 .. 111701

Gene Structure 7340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004571.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

atgcgttccaaagattcctttgttgattctgttgctgacaaccttttagatcgattggaggattgtaagaaaacatttccaacagcattatgtttgggaggttctttggaagctgttaggcgcttgctccatggtcgaggtgccattgaaaagctcattatgatgtctacatcatatgacatggtaaaacgatgtagaaatgctgaggatgaggtacagaatgaaaacattgaaacatccttcatggttggcgatgaagagtttttgcccattaaagaaagttctctagatctggtaattagttgcttgggccttcattggacaaatgatcttccaggagccatgatacagtgcagattggcattaaagccagatggcttatttttagcagcaattcttggcggggaaaccttaaaagagctgagaattgcatgcactgtggcacaaatggagcgtgaaggaggcatcagtccacgaatatcgcctctggcacaagtgcgggatgcaggaaatcttttgaccagggcaggctttacccttccaggtgttgatgttgatgaatatgtagtgagatatccaagtgctctggatctcatagaacatctgcgtgcaatgggcgaaaccaatgcccttctacaaaggaaccctatgctcaagagagatacagcccttgccactgcagcaatttatgattcaatgtttgcagcagaagatggcaccatccctgcaacctttcaggttatttatatgactggttggagggagcattcatctcagccgagggctaaaaggaggggatctgcaaccgtatccttccaggatatccagaaacaatttggaagtgagattagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

284

Amino Acids

31.39

Weight (kDa)

5.28

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22800
fragaria_vesca	FvH4_5g33060
malus_domestica	MD04G1240000.v1.1 MD08G1215200.v1.1 MD15G1399100.v1.1
prunus_persica	Prupe.1G530500_v2.0.a1 Prupe.1G530500_v2.0.a1 Prupe.1G530500_v2.0.a1
pyrus_communis	pycom08g18630 pycom15g35810
rosa_chinensis	RchiOBHm_Chr7g0231231
rosa_laevigata	RLG00000001427
rosa_multiflora	Rmu_sc0004571.1_g000020
rosa_roxburghii	Rroxscaffold_3G00229420
rosa_rugosa	Rorug07G0265200
rosa_samantha	Rh7BG394200 Rh7CG438300
rosa_wichuraiana	Rw7G034630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	140, 716
AccI	GTMKAC	1 cut(s)	167
AciI	CCGC	2 cut(s)	402, 499
AclWI	GGATC	2 cut(s)	597, 805
AfaI	GTAC	1 cut(s)	216
AgsI	TTSAA	3 cut(s)	149, 233, 696
AjnI	CCWGG	4 cut(s)	334, 521, 541, 816
AluBI	AGCT	3 cut(s)	113, 154, 421
AluI	AGCT	3 cut(s)	113, 154, 421
Alw21I	GWGCWC	1 cut(s)	586
AlwI	GGATC	2 cut(s)	597, 805
AoxI	GGCC	1 cut(s)	310
ApeKI	GCWGC	3 cut(s)	389, 680, 704
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	310
BanI	GGYRCC	2 cut(s)	140, 716
Bbv12I	GWGCWC	1 cut(s)	586
BbvCI	CCTCAGC	1 cut(s)	204
BbvI	GCAGC	3 cut(s)	401, 692, 716
BccI	CCATC	3 cut(s)	368, 707, 728
BcgI	CGANNNNNNTGC	2 cut(s)	608, 642
BciT130I	CCWGG	4 cut(s)	336, 523, 543, 818
BciVI	GTATCC	1 cut(s)	820
BfaI	CTAG	1 cut(s)	287
BfmI	CTRYAG	1 cut(s)	678
BfoI	RGCGCY	1 cut(s)	124
BfuI	GTATCC	1 cut(s)	820
BglII	AGATCT	1 cut(s)	289
BisI	GCNGC	3 cut(s)	390, 681, 705
BlsI	GCNGC	3 cut(s)	391, 682, 706
Bme1390I	CCNGG	4 cut(s)	336, 523, 543, 818
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	4 cut(s)	142, 340, 644, 718
BmrFI	CCNGG	4 cut(s)	336, 523, 543, 818
BmsI	GCATC	2 cut(s)	474, 493
Bpu10I	CCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	638
Bsa29I	ATCGAT	1 cut(s)	52
BsaJI	CCNNGG	3 cut(s)	130, 522, 779
Bse1I	ACTGG	1 cut(s)	757
Bse3DI	GCAATG	1 cut(s)	618
BseBI	CCWGG	4 cut(s)	336, 523, 543, 818
BseCI	ATCGAT	1 cut(s)	52
BseDI	CCNNGG	3 cut(s)	130, 522, 779
BseGI	GGATG	4 cut(s)	214, 236, 508, 720
BseMI	GCAATG	1 cut(s)	618
BseMII	CTCAG	3 cut(s)	195, 413, 788
BseNI	ACTGG	1 cut(s)	757
BseXI	GCAGC	3 cut(s)	401, 692, 716
BsgI	GTGCAG	1 cut(s)	373
BshFI	GGCC	1 cut(s)	312
BshNI	GGYRCC	2 cut(s)	140, 716
BshVI	ATCGAT	1 cut(s)	52
BsiHKAI	GWGCWC	1 cut(s)	586
BsmI	GAATGC	1 cut(s)	766
BsnI	GGCC	1 cut(s)	312
Bsp1286I	GDGCHC	1 cut(s)	586
Bsp143I	GATC	5 cut(s)	49, 289, 328, 589, 797
Bsp19I	CCATGG	1 cut(s)	130
BspACI	CCGC	2 cut(s)	402, 499
BspANI	GGCC	1 cut(s)	312
BspCNI	CTCAG	3 cut(s)	196, 414, 787
BspDI	ATCGAT	1 cut(s)	52
BspLI	GGNNCC	4 cut(s)	142, 340, 644, 718
BspMAI	CTGCAG	1 cut(s)	682
BspPI	GGATC	2 cut(s)	597, 805
BspT107I	GGYRCC	2 cut(s)	140, 716
BsrDI	GCAATG	1 cut(s)	618
BsrI	ACTGG	1 cut(s)	757
BssECI	CCNNGG	3 cut(s)	130, 522, 779
BssMI	GATC	5 cut(s)	49, 289, 328, 589, 797
BssT1I	CCWWGG	1 cut(s)	130
Bst2UI	CCWGG	4 cut(s)	336, 523, 543, 818
Bst4CI	ACNGT	3 cut(s)	351, 439, 808
Bst6I	CTCTTC	1 cut(s)	252
BstC8I	GCNNGC	4 cut(s)	125, 433, 529, 609
BstDEI	CTNAG	3 cut(s)	204, 422, 774
BstDSI	CCRYGG	1 cut(s)	130
BstF5I	GGATG	4 cut(s)	214, 236, 508, 720
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	5 cut(s)	52, 292, 331, 592, 800
BstMBI	GATC	5 cut(s)	49, 289, 328, 589, 797
BstMWI	GCNNNNNNNGC	1 cut(s)	680
BstNI	CCWGG	4 cut(s)	336, 523, 543, 818
BstNSI	RCATGY	1 cut(s)	435
BstSCI	CCNGG	4 cut(s)	334, 521, 541, 816
BstSFI	CTRYAG	1 cut(s)	678
BstV1I	GCAGC	3 cut(s)	401, 692, 716
BstX2I	RGATCY	3 cut(s)	289, 589, 797
BstYI	RGATCY	3 cut(s)	289, 589, 797
Bsu15I	ATCGAT	1 cut(s)	52
BsuI	GTATCC	1 cut(s)	820
BsuRI	GGCC	1 cut(s)	312
BsuTUI	ATCGAT	1 cut(s)	52
BtgI	CCRYGG	1 cut(s)	130
BtgZI	GCGATG	1 cut(s)	267
BtsCI	GGATG	4 cut(s)	214, 236, 508, 720
BtsI	GCAGTG	1 cut(s)	675
BtsIMutI	CAGTG	3 cut(s)	356, 435, 675
Cac8I	GCNNGC	4 cut(s)	125, 433, 529, 609
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	310
ClaI	ATCGAT	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	215
CviAII	CATG	5 cut(s)	131, 181, 244, 343, 432
CviQI	GTAC	1 cut(s)	215
DdeI	CTNAG	3 cut(s)	204, 422, 774
DpnI	GATC	5 cut(s)	51, 291, 330, 591, 799
DpnII	GATC	5 cut(s)	49, 289, 328, 589, 797
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	130
Eco32I	GATATC	2 cut(s)	575, 823
EcoRII	CCWGG	4 cut(s)	334, 521, 541, 816
EcoRV	GATATC	2 cut(s)	575, 823
EcoT14I	CCWWGG	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	130
FaeI	CATG	5 cut(s)	134, 184, 247, 346, 435
FatI	CATG	5 cut(s)	130, 180, 243, 342, 431
FauI	CCCGC	2 cut(s)	395, 492
FauNDI	CATATG	1 cut(s)	175
FblI	GTMKAC	1 cut(s)	167
Fnu4HI	GCNGC	3 cut(s)	390, 681, 705
FokI	GGATG	4 cut(s)	221, 223, 515, 707
Fsp4HI	GCNGC	3 cut(s)	390, 681, 705
FspBI	CTAG	1 cut(s)	287
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	3 cut(s)	390, 681, 705
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	1 cut(s)	312
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	5 cut(s)	134, 184, 247, 346, 435
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HinfI	GANTC	3 cut(s)	14, 26, 692
Hpy166II	GTNNAC	2 cut(s)	168, 473
Hpy188III	TCNNGA	4 cut(s)	287, 587, 655, 826
Hpy8I	GTNNAC	2 cut(s)	168, 473
HpyAV	CCTTC	6 cut(s)	250, 323, 452, 548, 641, 823
HpyCH4III	ACNGT	3 cut(s)	351, 439, 808
HpyCH4V	TGCA	9 cut(s)	354, 431, 435, 506, 611, 680, 704, 728, 803
HpyF10VI	GCNNNNNNNGC	1 cut(s)	680
HpyF3I	CTNAG	3 cut(s)	204, 422, 774
Hsp92II	CATG	5 cut(s)	134, 184, 247, 346, 435
HspAI	GCGC	1 cut(s)	121
Kzo9I	GATC	5 cut(s)	49, 289, 328, 589, 797
LmnI	GCTCC	4 cut(s)	132, 338, 451, 763
Lsp1109I	GCAGC	3 cut(s)	401, 692, 716
LweI	GCATC	2 cut(s)	474, 493
MaeI	CTAG	1 cut(s)	287
MalI	GATC	5 cut(s)	51, 291, 330, 591, 799
MboI	GATC	5 cut(s)	49, 289, 328, 589, 797
MboII	GAAGA	3 cut(s)	269, 323, 722
MflI	RGATCY	3 cut(s)	289, 589, 797
MhlI	GDGCHC	1 cut(s)	586
MluCI	AATT	5 cut(s)	297, 393, 426, 684, 833
MmeI	TCCRAC	2 cut(s)	104, 737
MseI	TTAA	3 cut(s)	273, 365, 413
MslI	CAYNNNNRTG	2 cut(s)	161, 606
MspR9I	CCNGG	4 cut(s)	336, 523, 543, 818
Mva1269I	GAATGC	1 cut(s)	766
MvaI	CCWGG	4 cut(s)	336, 523, 543, 818
MwoI	GCNNNNNNNGC	1 cut(s)	680
NcoI	CCATGG	1 cut(s)	130
NdeI	CATATG	1 cut(s)	175
NdeII	GATC	5 cut(s)	49, 289, 328, 589, 797
NlaIII	CATG	5 cut(s)	134, 184, 247, 346, 435
NlaIV	GGNNCC	4 cut(s)	142, 340, 644, 718
NmeAIII	GCCGAG	1 cut(s)	804
NspI	RCATGY	1 cut(s)	435
PaeI	GCATGC	1 cut(s)	435
PctI	GAATGC	1 cut(s)	766
PfeI	GAWTC	3 cut(s)	14, 26, 692
PfoI	TCCNGGA	2 cut(s)	334, 816
PkrI	GCNGC	3 cut(s)	391, 682, 706
Psp6I	CCWGG	4 cut(s)	334, 521, 541, 816
PspGI	CCWGG	4 cut(s)	334, 521, 541, 816
PspN4I	GGNNCC	4 cut(s)	142, 340, 644, 718
PspPI	GGNCC	1 cut(s)	310
PstI	CTGCAG	1 cut(s)	682
PsuI	RGATCY	3 cut(s)	289, 589, 797
RsaI	GTAC	1 cut(s)	216
RsaNI	GTAC	1 cut(s)	215
RseI	CAYNNNNRTG	2 cut(s)	161, 606
SaqAI	TTAA	3 cut(s)	273, 365, 413
SatI	GCNGC	3 cut(s)	390, 681, 705
Sau3AI	GATC	5 cut(s)	49, 289, 328, 589, 797
Sau96I	GGNCC	1 cut(s)	310
ScrFI	CCNGG	4 cut(s)	336, 523, 543, 818
SduI	GDGCHC	1 cut(s)	586
SfaNI	GCATC	2 cut(s)	474, 493
SfcI	CTRYAG	1 cut(s)	678
SmiMI	CAYNNNNRTG	2 cut(s)	161, 606
SmlI	CTYRAG	1 cut(s)	653
SmoI	CTYRAG	1 cut(s)	653
SphI	GCATGC	1 cut(s)	435
Sse9I	AATT	5 cut(s)	297, 393, 426, 684, 833
SsiI	CCGC	2 cut(s)	402, 499
SspMI	CTAG	1 cut(s)	287
StyD4I	CCNGG	4 cut(s)	334, 521, 541, 816
StyI	CCWWGG	1 cut(s)	130
TaaI	ACNGT	3 cut(s)	351, 439, 808
TaqI	TCGA	2 cut(s)	52, 136
TasI	AATT	5 cut(s)	297, 393, 426, 684, 833
TfiI	GAWTC	3 cut(s)	14, 26, 692
Tru1I	TTAA	3 cut(s)	273, 365, 413
Tru9I	TTAA	3 cut(s)	273, 365, 413
TscAI	CASTG	3 cut(s)	356, 442, 682
TseI	GCWGC	3 cut(s)	389, 680, 704
TspDTI	ATGAA	6 cut(s)	232, 237, 270, 305, 573, 759
TspRI	CASTG	3 cut(s)	356, 442, 682
XbaI	TCTAGA	1 cut(s)	286
XceI	RCATGY	1 cut(s)	435
XcmI	CCANNNNNNNNNTGG	1 cut(s)	833
XmiI	GTMKAC	1 cut(s)	167
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.