pycom08g18630

Methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0013179
Physical Location & Seq
Reverse (-)
18741761 .. 18747486
5726 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g18630.6

Sequence Viewer

Length: 963 bp
ATGCTCTCTGTACCGACGCCAACATTGATGGGGTTCAAAGCTCCAGGATCGATCCCCAAGGTCTTCGATCGCCACTTCAGACGCAAACAGCTTGATCGATCTGCTTGGTTGATGCGTTCCAAGGATTCTTTTGTTGATACTGTGGCTGAGAATCTATTAGATCGTTTGGAGGACTGCAAGAAAACATTTCCAGCGGCATTATGTTTAGGAGGTCAATTGGAAGCTGTCAGGCGCTTGTTACGTGGTCGTGGTGCCATTGAAAAGCTCATTATGATGTCTGTATCATCTGACATGGTAGAACTGTGTAGAAATGCTGAGCGTGAGTTACACACTGAAAACATTGAAACATCCTTTATGGTTGGTGACGAAGAGTTTTTGCCTGTTAAGGAAAATTCTGTGGATCTGGTATTAAGCTGCTTGGGACTTCACTGGACAAATGATCTTCCAGGAGCCATGATACAGTGCAGATTGGCATTGAAGCCAGATGGTCTATTTTTAGCAGCAATTCTGGGTGGAGAAACCTTAAGAGAGCTGAGAATAGCGTGCACCGTGGCACAAATGGAGCGTGAAGGAGGCATCAGTCCACGAATTTCACCTTTGGCGCAAGTGCGGGATGCAGGCAATCTTTTGACCAGGGCAGGCTTTACCCTTCCAGGTGTTGATGTGGACGAATTTGTAGTAAGATATCCAAGTGCTCTGGATCTCATAGAACATTTGCGTGCAATGGGTGAAACCAATGCTCTGCTACAAAGGAACACTATTTTAAAGAGAGAAACGGCCGTGGCCACCGCAGCAATTTATGATTCAATGTTTGCAGCAGAGGATGGCACCATCCCAGCAACCTTCCAGGTGATATATATGACAGGATGGAGGGACCATCCATCTCAGCAGAGGGCAAAGAGGAGGGGGTCAGCAACTGTATCTTTTCAGGACATCCAGAAGCAATTTGGAAGTGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

321

Amino Acids

35.58

Weight (kDa)

6.04

Isoelectric Point (pI)

48.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013179)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22800
fragaria_vesca FvH4_5g33060
malus_domestica MD04G1240000.v1.1 MD08G1215200.v1.1 MD15G1399100.v1.1
prunus_persica Prupe.1G530500_v2.0.a1 Prupe.1G530500_v2.0.a1 Prupe.1G530500_v2.0.a1
pyrus_communis pycom08g18630 pycom15g35810
rosa_chinensis RchiOBHm_Chr7g0231231
rosa_laevigata RLG00000001427
rosa_multiflora Rmu_sc0004571.1_g000020
rosa_roxburghii Rroxscaffold_3G00229420
rosa_rugosa Rorug07G0265200
rosa_samantha Rh7BG394200 Rh7CG438300
rosa_wichuraiana Rw7G034630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 251, 827
AciI CCGC 3 cut(s) 194, 610, 789
AclWI GGATC 4 cut(s) 46, 55, 408, 708
AcoI YGGCCR 2 cut(s) 777, 783
AcsI RAATTY 3 cut(s) 391, 588, 671
AcuI CTGAAG 1 cut(s) 61
AcyI GRCGYC 1 cut(s) 17
AfaI GTAC 1 cut(s) 12
AflII CTTAAG 1 cut(s) 523
AgsI TTSAA 5 cut(s) 37, 260, 344, 478, 807
AjnI CCWGG 5 cut(s) 43, 445, 632, 652, 846
AluBI AGCT 6 cut(s) 41, 91, 224, 265, 414, 532
AluI AGCT 6 cut(s) 41, 91, 224, 265, 414, 532
Alw21I GWGCWC 2 cut(s) 548, 697
Alw44I GTGCAC 1 cut(s) 544
AlwI GGATC 4 cut(s) 46, 55, 408, 708
AlwNI CAGNNNCTG 1 cut(s) 917
AoxI GGCC 2 cut(s) 777, 783
ApaLI GTGCAC 1 cut(s) 544
ApeKI GCWGC 4 cut(s) 414, 500, 791, 815
ApoI RAATTY 3 cut(s) 391, 588, 671
AspLEI GCGC 2 cut(s) 234, 604
AspS9I GGNCC 1 cut(s) 874
AsuHPI GGTGA 4 cut(s) 374, 585, 740, 862
AvaII GGWCC 1 cut(s) 874
BaeGI GKGCMC 1 cut(s) 548
BalI TGGCCA 1 cut(s) 785
BanI GGYRCC 2 cut(s) 251, 827
BbsI GAAGAC 1 cut(s) 55
Bbv12I GWGCWC 2 cut(s) 548, 697
BbvI GCAGC 4 cut(s) 401, 512, 803, 827
BccI CCATC 7 cut(s) 22, 479, 818, 839, 861, 885, 889
BceAI ACGGC 2 cut(s) 764, 792
BciT130I CCWGG 5 cut(s) 45, 447, 634, 654, 848
BfoI RGCGCY 1 cut(s) 235
BfrI CTTAAG 1 cut(s) 523
BisI GCNGC 5 cut(s) 195, 415, 501, 792, 816
BlpI GCTNAGC 1 cut(s) 315
BlsI GCNGC 5 cut(s) 196, 416, 502, 793, 817
Bme1390I CCNGG 5 cut(s) 45, 447, 634, 654, 848
Bme18I GGWCC 1 cut(s) 874
BmgT120I GGNCC 1 cut(s) 874
BmiI GGNNCC 4 cut(s) 253, 451, 829, 875
BmrFI CCNGG 5 cut(s) 45, 447, 634, 654, 848
BmsI GCATC 3 cut(s) 102, 585, 604
BpiI GAAGAC 1 cut(s) 55
BpmI CTGGAG 1 cut(s) 27
Bpu1102I GCTNAGC 1 cut(s) 315
Bsa29I ATCGAT 2 cut(s) 50, 97
BsaAI YACGTR 1 cut(s) 242
BsaHI GRCGYC 1 cut(s) 17
BsaJI CCNNGG 5 cut(s) 57, 120, 549, 633, 780
Bse1I ACTGG 1 cut(s) 434
Bse3DI GCAATG 1 cut(s) 729
BseBI CCWGG 5 cut(s) 45, 447, 634, 654, 848
BseCI ATCGAT 2 cut(s) 50, 97
BseDI CCNNGG 5 cut(s) 57, 120, 549, 633, 780
BseGI GGATG 7 cut(s) 347, 619, 829, 831, 872, 877, 933
BseMI GCAATG 1 cut(s) 729
BseMII CTCAG 4 cut(s) 138, 306, 524, 899
BseNI ACTGG 1 cut(s) 434
BseRI GAGGAG 1 cut(s) 916
BseSI GKGCMC 1 cut(s) 548
BseX3I CGGCCG 1 cut(s) 777
BseXI GCAGC 4 cut(s) 401, 512, 803, 827
BseYI CCCAGC 1 cut(s) 835
BsgI GTGCAG 1 cut(s) 484
Bsh1285I CGRYCG 2 cut(s) 70, 780
BshFI GGCC 2 cut(s) 779, 785
BshNI GGYRCC 2 cut(s) 251, 827
BshVI ATCGAT 2 cut(s) 50, 97
BsiEI CGRYCG 2 cut(s) 70, 780
BsiHKAI GWGCWC 2 cut(s) 548, 697
BslFI GGGAC 2 cut(s) 435, 887
BsmFI GGGAC 2 cut(s) 435, 887
BsnI GGCC 2 cut(s) 779, 785
Bsp1286I GDGCHC 2 cut(s) 548, 697
Bsp143I GATC 9 cut(s) 47, 51, 67, 94, 98, 160, 400, 439, 700
Bsp1720I GCTNAGC 1 cut(s) 315
BspACI CCGC 3 cut(s) 194, 610, 789
BspANI GGCC 2 cut(s) 779, 785
BspCNI CTCAG 4 cut(s) 139, 307, 525, 898
BspDI ATCGAT 2 cut(s) 50, 97
BspLI GGNNCC 4 cut(s) 253, 451, 829, 875
BspPI GGATC 4 cut(s) 46, 55, 408, 708
BspT107I GGYRCC 2 cut(s) 251, 827
BspTI CTTAAG 1 cut(s) 523
BsrDI GCAATG 1 cut(s) 729
BsrI ACTGG 1 cut(s) 434
BssECI CCNNGG 5 cut(s) 57, 120, 549, 633, 780
BssMI GATC 9 cut(s) 47, 51, 67, 94, 98, 160, 400, 439, 700
BssNI GRCGYC 1 cut(s) 17
BssT1I CCWWGG 2 cut(s) 57, 120
Bst2UI CCWGG 5 cut(s) 45, 447, 634, 654, 848
Bst4CI ACNGT 5 cut(s) 142, 303, 462, 550, 919
Bst6I CTCTTC 1 cut(s) 363
BstACI GRCGYC 1 cut(s) 17
BstAFI CTTAAG 1 cut(s) 523
BstBAI YACGTR 1 cut(s) 242
BstC8I GCNNGC 4 cut(s) 544, 619, 640, 720
BstDEI CTNAG 4 cut(s) 147, 315, 533, 885
BstDSI CCRYGG 2 cut(s) 549, 780
BstF5I GGATG 7 cut(s) 347, 619, 829, 831, 872, 877, 933
BstH2I RGCGCY 1 cut(s) 235
BstHHI GCGC 2 cut(s) 234, 604
BstKTI GATC 9 cut(s) 50, 54, 70, 97, 101, 163, 403, 442, 703
BstMBI GATC 9 cut(s) 47, 51, 67, 94, 98, 160, 400, 439, 700
BstMCI CGRYCG 2 cut(s) 70, 780
BstMWI GCNNNNNNNGC 1 cut(s) 791
BstNI CCWGG 5 cut(s) 45, 447, 634, 654, 848
BstSCI CCNGG 5 cut(s) 43, 445, 632, 652, 846
BstSLI GKGCMC 1 cut(s) 548
BstV1I GCAGC 4 cut(s) 401, 512, 803, 827
BstV2I GAAGAC 1 cut(s) 55
BstX2I RGATCY 2 cut(s) 400, 700
BstYI RGATCY 2 cut(s) 400, 700
BstZI CGGCCG 1 cut(s) 777
Bsu15I ATCGAT 2 cut(s) 50, 97
BsuRI GGCC 2 cut(s) 779, 785
BsuTUI ATCGAT 2 cut(s) 50, 97
BtgI CCRYGG 2 cut(s) 549, 780
BtsCI GGATG 7 cut(s) 347, 619, 829, 831, 872, 877, 933
BtsIMutI CAGTG 3 cut(s) 330, 427, 467
Cac8I GCNNGC 4 cut(s) 544, 619, 640, 720
CaiI CAGNNNCTG 1 cut(s) 917
CfoI GCGC 2 cut(s) 234, 604
Cfr13I GGNCC 1 cut(s) 874
ClaI ATCGAT 2 cut(s) 50, 97
CseI GACGC 2 cut(s) 25, 90
Csp6I GTAC 1 cut(s) 11
CviAII CATG 2 cut(s) 292, 454
CviQI GTAC 1 cut(s) 11
DdeI CTNAG 4 cut(s) 147, 315, 533, 885
DpnI GATC 9 cut(s) 49, 53, 69, 96, 100, 162, 402, 441, 702
DpnII GATC 9 cut(s) 47, 51, 67, 94, 98, 160, 400, 439, 700
DraI TTTAAA 1 cut(s) 765
EaeI YGGCCR 2 cut(s) 777, 783
EagI CGGCCG 1 cut(s) 777
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
EclXI CGGCCG 1 cut(s) 777
Eco130I CCWWGG 2 cut(s) 57, 120
Eco32I GATATC 1 cut(s) 686
Eco47I GGWCC 1 cut(s) 874
Eco52I CGGCCG 1 cut(s) 777
Eco57I CTGAAG 1 cut(s) 61
EcoRII CCWGG 5 cut(s) 43, 445, 632, 652, 846
EcoRV GATATC 1 cut(s) 686
EcoT14I CCWWGG 2 cut(s) 57, 120
ErhI CCWWGG 2 cut(s) 57, 120
FaeI CATG 2 cut(s) 295, 457
FaqI GGGAC 2 cut(s) 435, 887
FatI CATG 2 cut(s) 291, 453
FauI CCCGC 1 cut(s) 603
Fnu4HI GCNGC 5 cut(s) 195, 415, 501, 792, 816
FokI GGATG 7 cut(s) 334, 626, 818, 836, 864, 879, 920
Fsp4HI GCNGC 5 cut(s) 195, 415, 501, 792, 816
GlaI GCGC 2 cut(s) 233, 603
GluI GCNGC 5 cut(s) 195, 415, 501, 792, 816
GsaI CCCAGC 1 cut(s) 839
GsuI CTGGAG 1 cut(s) 27
HaeII RGCGCY 1 cut(s) 235
HaeIII GGCC 2 cut(s) 779, 785
HgaI GACGC 2 cut(s) 25, 90
HhaI GCGC 2 cut(s) 234, 604
Hin1I GRCGYC 1 cut(s) 17
Hin1II CATG 2 cut(s) 295, 457
Hin6I GCGC 2 cut(s) 232, 602
HinP1I GCGC 2 cut(s) 232, 602
HinfI GANTC 3 cut(s) 125, 151, 803
HphI GGTGA 4 cut(s) 374, 585, 740, 862
Hpy166II GTNNAC 3 cut(s) 546, 584, 667
Hpy188I TCNGA 2 cut(s) 80, 289
Hpy188III TCNNGA 3 cut(s) 698, 929, 937
Hpy8I GTNNAC 3 cut(s) 546, 584, 667
Hpy99I CGWCG 1 cut(s) 19
HpyAV CCTTC 3 cut(s) 563, 659, 853
HpyCH4III ACNGT 5 cut(s) 142, 303, 462, 550, 919
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 6 cut(s) 177, 465, 546, 617, 722, 815
HpyF10VI GCNNNNNNNGC 1 cut(s) 791
HpyF3I CTNAG 4 cut(s) 147, 315, 533, 885
HpySE526I ACGT 1 cut(s) 241
Hsp92I GRCGYC 1 cut(s) 17
Hsp92II CATG 2 cut(s) 295, 457
HspAI GCGC 2 cut(s) 232, 602
Kzo9I GATC 9 cut(s) 47, 51, 67, 94, 98, 160, 400, 439, 700
LmnI GCTCC 3 cut(s) 46, 449, 562
Lsp1109I GCAGC 4 cut(s) 401, 512, 803, 827
LweI GCATC 3 cut(s) 102, 585, 604
MaeII ACGT 1 cut(s) 241
MaeIII GTNAC 3 cut(s) 237, 324, 362
MalI GATC 9 cut(s) 49, 53, 69, 96, 100, 162, 402, 441, 702
MboI GATC 9 cut(s) 47, 51, 67, 94, 98, 160, 400, 439, 700
MboII GAAGA 3 cut(s) 55, 380, 434
MfeI CAATTG 1 cut(s) 215
MflI RGATCY 2 cut(s) 400, 700
MhlI GDGCHC 2 cut(s) 548, 697
MlsI TGGCCA 1 cut(s) 785
MluCI AATT 7 cut(s) 215, 391, 504, 588, 671, 795, 944
MluNI TGGCCA 1 cut(s) 785
MnlI CCTC 9 cut(s) 163, 203, 566, 814, 864, 885, 894, 897, 949
Mox20I TGGCCA 1 cut(s) 785
MscI TGGCCA 1 cut(s) 785
MseI TTAA 4 cut(s) 384, 410, 524, 764
MslI CAYNNNNRTG 2 cut(s) 272, 717
Msp20I TGGCCA 1 cut(s) 785
MspA1I CMGCKG 1 cut(s) 194
MspCI CTTAAG 1 cut(s) 523
MspR9I CCNGG 5 cut(s) 45, 447, 634, 654, 848
MunI CAATTG 1 cut(s) 215
MvaI CCWGG 5 cut(s) 45, 447, 634, 654, 848
MwoI GCNNNNNNNGC 1 cut(s) 791
NdeII GATC 9 cut(s) 47, 51, 67, 94, 98, 160, 400, 439, 700
NlaIII CATG 2 cut(s) 295, 457
NlaIV GGNNCC 4 cut(s) 253, 451, 829, 875
NmuCI GTSAC 1 cut(s) 362
PfeI GAWTC 3 cut(s) 125, 151, 803
PfoI TCCNGGA 2 cut(s) 43, 445
PkrI GCNGC 5 cut(s) 196, 416, 502, 793, 817
Ple19I CGATCG 1 cut(s) 70
Ppu21I YACGTR 1 cut(s) 242
Psp6I CCWGG 5 cut(s) 43, 445, 632, 652, 846
PspFI CCCAGC 1 cut(s) 835
PspGI CCWGG 5 cut(s) 43, 445, 632, 652, 846
PspN4I GGNNCC 4 cut(s) 253, 451, 829, 875
PspPI GGNCC 1 cut(s) 874
PstNI CAGNNNCTG 1 cut(s) 917
PsuI RGATCY 2 cut(s) 400, 700
PvuI CGATCG 1 cut(s) 70
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
RseI CAYNNNNRTG 2 cut(s) 272, 717
SaqAI TTAA 4 cut(s) 384, 410, 524, 764
SatI GCNGC 5 cut(s) 195, 415, 501, 792, 816
Sau3AI GATC 9 cut(s) 47, 51, 67, 94, 98, 160, 400, 439, 700
Sau96I GGNCC 1 cut(s) 874
ScrFI CCNGG 5 cut(s) 45, 447, 634, 654, 848
SduI GDGCHC 2 cut(s) 548, 697
SfaNI GCATC 3 cut(s) 102, 585, 604
SinI GGWCC 1 cut(s) 874
SmiMI CAYNNNNRTG 2 cut(s) 272, 717
SmlI CTYRAG 1 cut(s) 523
SmoI CTYRAG 1 cut(s) 523
Sse9I AATT 7 cut(s) 215, 391, 504, 588, 671, 795, 944
SsiI CCGC 3 cut(s) 194, 610, 789
StyD4I CCNGG 5 cut(s) 43, 445, 632, 652, 846
StyI CCWWGG 2 cut(s) 57, 120
TaaI ACNGT 5 cut(s) 142, 303, 462, 550, 919
TaiI ACGT 1 cut(s) 244
TaqI TCGA 3 cut(s) 50, 66, 97
TasI AATT 7 cut(s) 215, 391, 504, 588, 671, 795, 944
TauI GCSGC 1 cut(s) 197
TfiI GAWTC 3 cut(s) 125, 151, 803
Tru1I TTAA 4 cut(s) 384, 410, 524, 764
Tru9I TTAA 4 cut(s) 384, 410, 524, 764
TscAI CASTG 3 cut(s) 337, 434, 467
TseFI GTSAC 1 cut(s) 362
TseI GCWGC 4 cut(s) 414, 500, 791, 815
Tsp45I GTSAC 1 cut(s) 362
TspRI CASTG 3 cut(s) 337, 434, 467
Vha464I CTTAAG 1 cut(s) 523
VneI GTGCAC 1 cut(s) 544
VpaK11BI GGWCC 1 cut(s) 874
XapI RAATTY 3 cut(s) 391, 588, 671
XcmI CCANNNNNNNNNTGG 1 cut(s) 944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.