AT1G23070

Organic solute transporter Ostalpha

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012223
Physical Location & Seq
Reverse (-)
8173823 .. 8175819
1997 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G23070.1

Sequence Viewer

Length: 1212 bp
ATGGGAGTAACGGAGACAAGTACGTACAGAGATCTACATTTACCGTCTTTGATCATCGGAGGATCCTTCGCCACCGTTGCCATTTGTCTCTCCCTTTACTCTATCCTCCAACATCTCCGTTTCTACACCAATCCTGCTGAACAAAAATGGATTGTTTCTGTTTTGTTTATGGTGCCAGTTTATGCAACTGAATCGATCATTTCCTTGTCCAATTCGAAATTCTCGCTGCCTTGTGACATTTTGAGAAACTGCTATGAAGCTTTTGCTTTGTATTCGTTTGGAAGCTACTTGGTGGCATGTCTAGGTGGTGAAAGAAGAGTTGTTGAATACCTTGAAAATGAATCAAAGAAACCATTGTTAGAAGAAGGAGCAAATGAGAGTAAAAAGAAGAAGAAGAAGAATTCATTTTGGAAATTCTTGTGTGATCCATATGTCTTGGGACGAGAGCTCTTTGTGATAGAAAAGTTTGGTCTCGTTCAATATATGATCCTCAAAACCTTTTGTGCCTTCTTGACATTTTTGTTGGAGCTTCTTGGTGTCTATGGTGATGGTGAATTCAAATGGTATTACGGATATCCATACATAGTGGTGGTGCTAAACTTCAGCCAAATGTGGGCTCTGTTTTGCTTGGTTCAGTTCTATAATGTCACTCATGAACGGCTTAAAGAAATAAAACCGTTGGCTAAGTTCATTAGCTTTAAGGCTATCGTGTTTGCGACTTGGTGGCAAGGCTTCGGTATCGCGTTGCTTTGTTATTACGGTATACTTCCAAAAGAAGGTCGATTCCAAAACGGGCTGCAAGATTTCCTCATTTGCATTGAGATGGCGATTGCAGCGGTGGCTCATCTCTTTGTTTTTCCAGCTGAACCTTACCACTACATTCCGGTATCAGAGTGCGGTAAAATCACAGCCGAAACGAGCAAGACGGAAGTGAAACTAGAAGAAGGTGGTCTTGTTGAGACCACGGAGACTCAGGTTGAAGCATCTGGCACAAGCATTAAGGAGAGTGTACAGGACATAGTGATTGACGGTGGCCAACATGTCGTGAAAGATGTAGTTCTTACAATAAACCAAGCAATAGGACCGGTAGAGAAGGGTGTAACGAAGATCCAGGATACGATTCATCAAAAACTTTTGGATTCGGACGGTAAAGAAGAAACAGAAGTGACCGAAGAAGTGACCGTTGAGACTTCGGTGCCCCCAAAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0016020 GO:0016021 GO:0031224 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

403

Amino Acids

45.54

Weight (kDa)

5.31

Isoelectric Point (pI)

36.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 17 - 291 1.6e-90 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012223)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23070
fragaria_vesca FvH4_1g08970 FvH4_1g08970 FvH4_1g08970 FvH4_1g08970 FvH4_1g08970 FvH4_1g08970
malus_domestica MD02G1095200.v1.1
prunus_persica Prupe.7G196000_v2.0.a1
pyrus_communis pycom02g07520
rosa_chinensis RchiOBHm_Chr2g0095421
rosa_laevigata RLG00000016564
rosa_multiflora Rmu_co8230917.1_g000001 Rmu_sc0010847.1_g000005
rosa_samantha Rh2AG098900 Rh2BG100100 Rh2CG102100 Rh2DG099700
rosa_wichuraiana Rw2G007470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 172, 1195
AccI GTMKAC 1 cut(s) 763
AccII CGCG 1 cut(s) 743
AciI CCGC 2 cut(s) 836, 897
AclWI GGATC 5 cut(s) 57, 70, 419, 481, 1102
AcoI YGGCCR 1 cut(s) 1033
AcsI RAATTY 4 cut(s) 218, 400, 413, 554
AcuI CTGAAG 1 cut(s) 586
AfaI GTAC 3 cut(s) 22, 26, 1011
AfiI CCNNNNNNNGG 2 cut(s) 613, 776
AflIII ACRYGT 1 cut(s) 1039
AgeI ACCGGT 1 cut(s) 1084
AgsI TTSAA 5 cut(s) 326, 335, 479, 559, 980
AjnI CCWGG 1 cut(s) 1110
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AluBI AGCT 6 cut(s) 260, 285, 448, 529, 696, 863
AluI AGCT 6 cut(s) 260, 285, 448, 529, 696, 863
Alw21I GWGCWC 1 cut(s) 450
Alw26I GTCTC 6 cut(s) 8, 92, 476, 953, 962, 1181
AlwI GGATC 5 cut(s) 57, 70, 419, 481, 1102
AoxI GGCC 1 cut(s) 1033
ApeKI GCWGC 3 cut(s) 226, 796, 833
ApoI RAATTY 4 cut(s) 218, 400, 413, 554
AsiGI ACCGGT 1 cut(s) 1084
AspS9I GGNCC 1 cut(s) 1082
AsuHPI GGTGA 3 cut(s) 320, 557, 563
AsuII TTCGAA 1 cut(s) 215
AvaII GGWCC 1 cut(s) 1082
BaeGI GKGCMC 1 cut(s) 1200
BalI TGGCCA 1 cut(s) 1035
BamHI GGATCC 1 cut(s) 62
BanI GGYRCC 2 cut(s) 172, 1195
BanII GRGCYC 2 cut(s) 450, 619
Bbv12I GWGCWC 1 cut(s) 450
BbvI GCAGC 3 cut(s) 213, 783, 845
BccI CCATC 2 cut(s) 542, 817
BceAI ACGGC 1 cut(s) 674
BcgI CGANNNNNNTGC 2 cut(s) 174, 208
BciT130I CCWGG 1 cut(s) 1112
BciVI GTATCC 1 cut(s) 1108
BclI TGATCA 1 cut(s) 51
BcoDI GTCTC 6 cut(s) 8, 92, 476, 953, 962, 1181
BfaI CTAG 2 cut(s) 302, 938
BfuI GTATCC 1 cut(s) 1108
BglII AGATCT 1 cut(s) 31
BisI GCNGC 3 cut(s) 227, 797, 834
BlsI GCNGC 3 cut(s) 228, 798, 835
Bme1390I CCNGG 1 cut(s) 1112
Bme18I GGWCC 1 cut(s) 1082
BmgT120I GGNCC 1 cut(s) 1082
BmiI GGNNCC 3 cut(s) 64, 174, 1197
BmrFI CCNGG 1 cut(s) 1112
BmsI GCATC 1 cut(s) 992
Bpu14I TTCGAA 1 cut(s) 215
Bsa29I ATCGAT 1 cut(s) 194
BsaAI YACGTR 1 cut(s) 24
BsaI GGTCTC 2 cut(s) 476, 953
BsaJI CCNNGG 1 cut(s) 963
BsaWI WCCGGW 2 cut(s) 883, 1084
Bsc4I CCNNNNNNNGG 2 cut(s) 613, 776
Bse118I RCCGGY 1 cut(s) 1084
Bse1I ACTGG 1 cut(s) 176
BseBI CCWGG 1 cut(s) 1112
BseCI ATCGAT 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 963
BseLI CCNNNNNNNGG 2 cut(s) 613, 776
BseMII CTCAG 1 cut(s) 986
BseNI ACTGG 1 cut(s) 176
BseSI GKGCMC 1 cut(s) 1200
BseXI GCAGC 3 cut(s) 213, 783, 845
Bsh1236I CGCG 1 cut(s) 743
BshFI GGCC 1 cut(s) 1035
BshNI GGYRCC 2 cut(s) 172, 1195
BshTI ACCGGT 1 cut(s) 1084
BshVI ATCGAT 1 cut(s) 194
BsiHKAI GWGCWC 1 cut(s) 450
BsiSI CCGG 2 cut(s) 884, 1085
BslFI GGGAC 1 cut(s) 453
BslI CCNNNNNNNGG 2 cut(s) 613, 776
BsmAI GTCTC 6 cut(s) 8, 92, 476, 953, 962, 1181
BsmFI GGGAC 1 cut(s) 453
BsnI GGCC 1 cut(s) 1035
Bso31I GGTCTC 2 cut(s) 476, 953
Bsp119I TTCGAA 1 cut(s) 215
Bsp1286I GDGCHC 3 cut(s) 450, 619, 1200
Bsp1407I TGTACA 1 cut(s) 1009
Bsp143I GATC 7 cut(s) 31, 51, 62, 195, 424, 486, 1107
BspACI CCGC 2 cut(s) 836, 897
BspANI GGCC 1 cut(s) 1035
BspCNI CTCAG 1 cut(s) 985
BspDI ATCGAT 1 cut(s) 194
BspFNI CGCG 1 cut(s) 743
BspHI TCATGA 1 cut(s) 652
BspLI GGNNCC 3 cut(s) 64, 174, 1197
BspPI GGATC 5 cut(s) 57, 70, 419, 481, 1102
BspT104I TTCGAA 1 cut(s) 215
BspT107I GGYRCC 2 cut(s) 172, 1195
BspTNI GGTCTC 2 cut(s) 476, 953
BsrFI RCCGGY 1 cut(s) 1084
BsrGI TGTACA 1 cut(s) 1009
BsrI ACTGG 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 1084
BssECI CCNNGG 1 cut(s) 963
BssMI GATC 7 cut(s) 31, 51, 62, 195, 424, 486, 1107
BssNAI GTATAC 1 cut(s) 764
Bst1107I GTATAC 1 cut(s) 764
Bst2UI CCWGG 1 cut(s) 1112
Bst4CI ACNGT 7 cut(s) 45, 76, 678, 761, 1031, 1148, 1183
Bst6I CTCTTC 1 cut(s) 310
BstAUI TGTACA 1 cut(s) 1009
BstBAI YACGTR 1 cut(s) 24
BstBI TTCGAA 1 cut(s) 215
BstDEI CTNAG 2 cut(s) 684, 972
BstDSI CCRYGG 1 cut(s) 963
BstFNI CGCG 1 cut(s) 743
BstKTI GATC 7 cut(s) 34, 54, 65, 198, 427, 489, 1110
BstMAI GTCTC 6 cut(s) 8, 92, 476, 953, 962, 1181
BstMBI GATC 7 cut(s) 31, 51, 62, 195, 424, 486, 1107
BstMWI GCNNNNNNNGC 3 cut(s) 77, 833, 839
BstNI CCWGG 1 cut(s) 1112
BstNSI RCATGY 2 cut(s) 300, 1043
BstSCI CCNGG 1 cut(s) 1110
BstSLI GKGCMC 1 cut(s) 1200
BstSNI TACGTA 1 cut(s) 24
BstUI CGCG 1 cut(s) 743
BstV1I GCAGC 3 cut(s) 213, 783, 845
BstX2I RGATCY 3 cut(s) 31, 62, 1107
BstYI RGATCY 3 cut(s) 31, 62, 1107
BstZ17I GTATAC 1 cut(s) 764
Bsu15I ATCGAT 1 cut(s) 194
BsuI GTATCC 1 cut(s) 1108
BsuRI GGCC 1 cut(s) 1035
BsuTUI ATCGAT 1 cut(s) 194
BtgI CCRYGG 1 cut(s) 963
CciI TCATGA 1 cut(s) 652
Cfr10I RCCGGY 1 cut(s) 1084
Cfr13I GGNCC 1 cut(s) 1082
ClaI ATCGAT 1 cut(s) 194
Csp6I GTAC 3 cut(s) 21, 25, 1010
CspAI ACCGGT 1 cut(s) 1084
CviAII CATG 3 cut(s) 297, 653, 1040
CviQI GTAC 3 cut(s) 21, 25, 1010
DdeI CTNAG 2 cut(s) 684, 972
DpnI GATC 7 cut(s) 33, 53, 64, 197, 426, 488, 1109
DpnII GATC 7 cut(s) 31, 51, 62, 195, 424, 486, 1107
EaeI YGGCCR 1 cut(s) 1033
Eam1104I CTCTTC 1 cut(s) 310
EarI CTCTTC 1 cut(s) 310
Ecl136II GAGCTC 1 cut(s) 448
Eco105I TACGTA 1 cut(s) 24
Eco24I GRGCYC 2 cut(s) 450, 619
Eco31I GGTCTC 2 cut(s) 476, 953
Eco32I GATATC 1 cut(s) 575
Eco47I GGWCC 1 cut(s) 1082
Eco53kI GAGCTC 1 cut(s) 448
Eco57I CTGAAG 1 cut(s) 586
EcoICRI GAGCTC 1 cut(s) 448
EcoRI GAATTC 2 cut(s) 400, 554
EcoRII CCWGG 1 cut(s) 1110
EcoRV GATATC 1 cut(s) 575
EcoT38I GRGCYC 2 cut(s) 450, 619
FaeI CATG 3 cut(s) 300, 656, 1043
FalI AAGNNNNNCTT 2 cut(s) 936, 968
FaqI GGGAC 1 cut(s) 453
FatI CATG 3 cut(s) 296, 652, 1039
FauNDI CATATG 1 cut(s) 430
FbaI TGATCA 1 cut(s) 51
FblI GTMKAC 1 cut(s) 763
Fnu4HI GCNGC 3 cut(s) 227, 797, 834
FriOI GRGCYC 2 cut(s) 450, 619
Fsp4HI GCNGC 3 cut(s) 227, 797, 834
FspBI CTAG 2 cut(s) 302, 938
GluI GCNGC 3 cut(s) 227, 797, 834
HaeIII GGCC 1 cut(s) 1035
HapII CCGG 2 cut(s) 884, 1085
Hin1II CATG 3 cut(s) 300, 656, 1043
HindIII AAGCTT 1 cut(s) 258
HinfI GANTC 6 cut(s) 191, 341, 783, 970, 1120, 1139
HpaII CCGG 2 cut(s) 884, 1085
HphI GGTGA 3 cut(s) 320, 557, 563
Hpy166II GTNNAC 2 cut(s) 764, 1010
Hpy188I TCNGA 3 cut(s) 59, 892, 1144
Hpy188III TCNNGA 3 cut(s) 511, 653, 1045
Hpy8I GTNNAC 2 cut(s) 764, 1010
HpyAV CCTTC 6 cut(s) 76, 359, 517, 770, 938, 1087
HpyCH4III ACNGT 7 cut(s) 45, 76, 678, 761, 1031, 1148, 1183
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 4 cut(s) 185, 799, 816, 833
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 833, 839
HpyF3I CTNAG 2 cut(s) 684, 972
HpySE526I ACGT 1 cut(s) 23
Hsp92II CATG 3 cut(s) 300, 656, 1043
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 7 cut(s) 31, 51, 62, 195, 424, 486, 1107
LmnI GCTCC 2 cut(s) 368, 526
Lsp1109I GCAGC 3 cut(s) 213, 783, 845
LweI GCATC 1 cut(s) 992
MaeI CTAG 2 cut(s) 302, 938
MaeII ACGT 1 cut(s) 23
MaeIII GTNAC 6 cut(s) 7, 233, 646, 1099, 1165, 1177
MalI GATC 7 cut(s) 33, 53, 64, 197, 426, 488, 1109
MboI GATC 7 cut(s) 31, 51, 62, 195, 424, 486, 1107
MflI RGATCY 3 cut(s) 31, 62, 1107
MhlI GDGCHC 3 cut(s) 450, 619, 1200
MlsI TGGCCA 1 cut(s) 1035
MluCI AATT 5 cut(s) 211, 218, 400, 413, 554
MluNI TGGCCA 1 cut(s) 1035
MlyI GAGTC 1 cut(s) 964
MmeI TCCRAC 2 cut(s) 133, 504
MnlI CCTC 4 cut(s) 53, 116, 500, 818
Mox20I TGGCCA 1 cut(s) 1035
MscI TGGCCA 1 cut(s) 1035
MseI TTAA 3 cut(s) 663, 699, 999
MslI CAYNNNNRTG 2 cut(s) 587, 821
Msp20I TGGCCA 1 cut(s) 1035
MspA1I CMGCKG 2 cut(s) 836, 863
MspI CCGG 2 cut(s) 884, 1085
MspR9I CCNGG 1 cut(s) 1112
MvaI CCWGG 1 cut(s) 1112
MvnI CGCG 1 cut(s) 743
MwoI GCNNNNNNNGC 3 cut(s) 77, 833, 839
NdeI CATATG 1 cut(s) 430
NdeII GATC 7 cut(s) 31, 51, 62, 195, 424, 486, 1107
NlaIII CATG 3 cut(s) 300, 656, 1043
NlaIV GGNNCC 3 cut(s) 64, 174, 1197
NmuCI GTSAC 4 cut(s) 233, 646, 1165, 1177
NspI RCATGY 2 cut(s) 300, 1043
NspV TTCGAA 1 cut(s) 215
PagI TCATGA 1 cut(s) 652
PciI ACATGT 1 cut(s) 1039
PfeI GAWTC 5 cut(s) 191, 341, 783, 1120, 1139
PfoI TCCNGGA 1 cut(s) 1110
PinAI ACCGGT 1 cut(s) 1084
PkrI GCNGC 3 cut(s) 228, 798, 835
PleI GAGTC 1 cut(s) 964
PpsI GAGTC 1 cut(s) 964
Ppu21I YACGTR 1 cut(s) 24
PscI ACATGT 1 cut(s) 1039
Psp124BI GAGCTC 1 cut(s) 450
Psp6I CCWGG 1 cut(s) 1110
PspGI CCWGG 1 cut(s) 1110
PspN4I GGNNCC 3 cut(s) 64, 174, 1197
PspPI GGNCC 1 cut(s) 1082
PsuI RGATCY 3 cut(s) 31, 62, 1107
PvuII CAGCTG 1 cut(s) 863
RsaI GTAC 3 cut(s) 22, 26, 1011
RsaNI GTAC 3 cut(s) 21, 25, 1010
RseI CAYNNNNRTG 2 cut(s) 587, 821
SacI GAGCTC 1 cut(s) 450
SaqAI TTAA 3 cut(s) 663, 699, 999
SatI GCNGC 3 cut(s) 227, 797, 834
Sau3AI GATC 7 cut(s) 31, 51, 62, 195, 424, 486, 1107
Sau96I GGNCC 1 cut(s) 1082
SchI GAGTC 1 cut(s) 964
ScrFI CCNGG 1 cut(s) 1112
SduI GDGCHC 3 cut(s) 450, 619, 1200
SfaNI GCATC 1 cut(s) 992
SfuI TTCGAA 1 cut(s) 215
SinI GGWCC 1 cut(s) 1082
SmiMI CAYNNNNRTG 2 cut(s) 587, 821
SnaBI TACGTA 1 cut(s) 24
Sse9I AATT 5 cut(s) 211, 218, 400, 413, 554
SsiI CCGC 2 cut(s) 836, 897
SspMI CTAG 2 cut(s) 302, 938
SstI GAGCTC 1 cut(s) 450
StyD4I CCNGG 1 cut(s) 1110
TaaI ACNGT 7 cut(s) 45, 76, 678, 761, 1031, 1148, 1183
TaiI ACGT 1 cut(s) 26
TaqI TCGA 3 cut(s) 194, 215, 781
TaqII GACCGA 1 cut(s) 1184
TasI AATT 5 cut(s) 211, 218, 400, 413, 554
TatI WGTACW 1 cut(s) 1009
TfiI GAWTC 5 cut(s) 191, 341, 783, 1120, 1139
Tru1I TTAA 3 cut(s) 663, 699, 999
Tru9I TTAA 3 cut(s) 663, 699, 999
TseFI GTSAC 4 cut(s) 233, 646, 1165, 1177
TseI GCWGC 3 cut(s) 226, 796, 833
Tsp45I GTSAC 4 cut(s) 233, 646, 1165, 1177
TspDTI ATGAA 6 cut(s) 270, 354, 393, 669, 679, 1112
TspGWI ACGGA 5 cut(s) 26, 107, 585, 941, 980
VpaK11BI GGWCC 1 cut(s) 1082
XapI RAATTY 4 cut(s) 218, 400, 413, 554
XceI RCATGY 2 cut(s) 300, 1043
XmiI GTMKAC 1 cut(s) 763
XspI CTAG 2 cut(s) 302, 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.