Rmu_co8230917.1_g000001

Transmembrane protein 184 homolog DDB_G0279555

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8230917.1
Physical Location & Seq
Reverse (-)
1 .. 420
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8230917.1_g000001.1.cds

Sequence Viewer

Length: 339 bp
atgattctgaagacagtttgtgcattcctagcactcgtgttggaaatctttggcgtctatggtgatggggaattcaagtttcactacgggtatccatacatcacgatagtactgaatttcagccagatgtgggcattgtattgccttgtgcaattctataatgtgactcatgaaagacttcaaccaataaggccgcttgcaaagttcatcagctttaaggctattgtgtttgcgacttggtggcaaggtgtaggtattgcgctgttgtgttattttggtgttcttcccaaccaggaaaaactacaaacagggttgcaggatttcttgatttgtatagaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

13.1

Weight (kDa)

6.7

Isoelectric Point (pI)

27.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012223)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 194
AcsI RAATTY 2 cut(s) 71, 115
AcuI CTGAAG 1 cut(s) 29
AcyI GRCGYC 1 cut(s) 54
AfaI GTAC 1 cut(s) 111
AfiI CCNNNNNNNGG 1 cut(s) 130
AgsI TTSAA 2 cut(s) 76, 182
AjnI CCWGG 1 cut(s) 291
AluBI AGCT 1 cut(s) 213
AluI AGCT 1 cut(s) 213
AoxI GGCC 1 cut(s) 191
ApoI RAATTY 2 cut(s) 71, 115
Asp700I GAANNNNTTC 1 cut(s) 177
AspLEI GCGC 1 cut(s) 262
AsuHPI GGTGA 1 cut(s) 74
BauI CACGAG 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 17
BccI CCATC 1 cut(s) 59
BciT130I CCWGG 1 cut(s) 293
BciVI GTATCC 1 cut(s) 102
BfaI CTAG 1 cut(s) 29
BfuI GTATCC 1 cut(s) 102
BisI GCNGC 1 cut(s) 194
BlsI GCNGC 1 cut(s) 195
BmcAI AGTACT 1 cut(s) 111
Bme1390I CCNGG 1 cut(s) 293
BmrFI CCNGG 1 cut(s) 293
BpiI GAAGAC 1 cut(s) 17
BsaHI GRCGYC 1 cut(s) 54
Bsc4I CCNNNNNNNGG 1 cut(s) 130
BseBI CCWGG 1 cut(s) 293
BseLI CCNNNNNNNGG 1 cut(s) 130
BshFI GGCC 1 cut(s) 193
BslI CCNNNNNNNGG 1 cut(s) 130
BsmI GAATGC 1 cut(s) 23
BsnI GGCC 1 cut(s) 193
BspACI CCGC 1 cut(s) 194
BspANI GGCC 1 cut(s) 193
BspHI TCATGA 1 cut(s) 169
BssNI GRCGYC 1 cut(s) 54
BssSI CACGAG 1 cut(s) 35
Bst2BI CACGAG 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 293
Bst4CI ACNGT 1 cut(s) 16
BstACI GRCGYC 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 198
BstHHI GCGC 1 cut(s) 262
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 291
BstV2I GAAGAC 1 cut(s) 17
BsuI GTATCC 1 cut(s) 102
BsuRI GGCC 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 198
CciI TCATGA 1 cut(s) 169
CfoI GCGC 1 cut(s) 262
CseI GACGC 1 cut(s) 43
Csp6I GTAC 1 cut(s) 110
CviAII CATG 1 cut(s) 170
CviJI RGCY 4 cut(s) 123, 193, 213, 221
CviKI_1 RGCY 4 cut(s) 123, 193, 213, 221
CviQI GTAC 1 cut(s) 110
Eco57I CTGAAG 1 cut(s) 29
EcoRI GAATTC 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 291
FaeI CATG 1 cut(s) 173
FaiI YATR 5 cut(s) 60, 97, 159, 171, 335
FatI CATG 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 194
Fsp4HI GCNGC 1 cut(s) 194
FspBI CTAG 1 cut(s) 29
GlaI GCGC 1 cut(s) 261
GluI GCNGC 1 cut(s) 194
HaeIII GGCC 1 cut(s) 193
HgaI GACGC 1 cut(s) 43
HhaI GCGC 1 cut(s) 262
Hin1I GRCGYC 1 cut(s) 54
Hin1II CATG 1 cut(s) 173
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HinfI GANTC 2 cut(s) 4, 166
HphI GGTGA 1 cut(s) 74
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 3 cut(s) 103, 170, 325
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 4 cut(s) 23, 151, 200, 316
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
Hsp92I GRCGYC 1 cut(s) 54
Hsp92II CATG 1 cut(s) 173
HspAI GCGC 1 cut(s) 260
LpnPI CCDG 5 cut(s) 137, 278, 294, 302, 305
MaeI CTAG 1 cut(s) 29
MaeIII GTNAC 1 cut(s) 163
MboII GAAGA 2 cut(s) 22, 275
MluCI AATT 3 cut(s) 71, 115, 152
MlyI GAGTC 1 cut(s) 160
MmeI TCCRAC 1 cut(s) 21
MroXI GAANNNNTTC 1 cut(s) 177
MseI TTAA 1 cut(s) 216
MspR9I CCNGG 1 cut(s) 293
Mva1269I GAATGC 1 cut(s) 23
MvaI CCWGG 1 cut(s) 293
MwoI GCNNNNNNNGC 1 cut(s) 29
NlaIII CATG 1 cut(s) 173
NmuCI GTSAC 1 cut(s) 163
PagI TCATGA 1 cut(s) 169
PctI GAATGC 1 cut(s) 23
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 1 cut(s) 195
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 291
PspGI CCWGG 1 cut(s) 291
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 1 cut(s) 194
ScaI AGTACT 1 cut(s) 111
SchI GAGTC 1 cut(s) 160
ScrFI CCNGG 1 cut(s) 293
SetI ASST 3 cut(s) 215, 250, 256
Sse9I AATT 3 cut(s) 71, 115, 152
SsiI CCGC 1 cut(s) 194
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 291
TaaI ACNGT 1 cut(s) 16
TasI AATT 3 cut(s) 71, 115, 152
TatI WGTACW 1 cut(s) 109
TauI GCSGC 1 cut(s) 196
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TseFI GTSAC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 2 cut(s) 186, 196
XapI RAATTY 2 cut(s) 71, 115
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 1 cut(s) 29
ZrmI AGTACT 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.