Prupe.7G196000_v2.0.a1

Transmembrane protein 184 homolog DDB_G0279555

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0012223
Physical Location & Seq
Forward (+)
18534664 .. 18538539
3876 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G196000.1

Sequence Viewer

Length: 1254 bp
ATGGCATCACATTATGCCTCAGCCCATGAAAGCATATACAGAGATCTCTACCAACCAGCTGTTATCATTGGAGCCTGCTTTGCAGCTGTGGCGCTGGTCCTCTCCATTTTTCTCATCTTTCAACATCTCAGATTATACACCAAACCCACTGAACAAAAATGGGTGGTTGCTGTAGTTTTCATGGTACCTGTCTATGCTACTGAGTCAATTTTATCCTTGTGGAATCCAAAACTTTCTCTTGCATGTGACATTCTAAGAAATTGTTATGAAGCATTTGCCTTGTATTCTTTTGGAAGCTACTTGGTTGCTTGTCTGGGAGGTGAAAGAAGAGTTGTAGAGCTACTTGAAAATCAATCTGGAAAACTGCTCAACAAACCATTGGTAGAAGGAACAGATGAGAATCACACCGAACCACATTGGTCTCTTCGTAACTTCTTCTTACGACCATGTATTCTCGGGAAACATTTGCTCAATATAGAAAAATTTGGTCTTGTACAATATATGATTCTGAAGACAGTTTGTGCATTCTTAGCATTAGTGTTGGAGATCTTTGGTGTTTATGGAAATGGGAAATTCAAGTGGTATTATGGTTATCCATACATGGCAGTAGTATTGAACTTCAGCCAGATGTGGGCATTGTATTGCCTTGTGCAGTTCTATAATGTAACTCATGAAAGGCTTCAACCAATAAGACCACTTGCAAAGTTCATCAGCTTTAAGGCTATTGTTTTTGCCACTTGGTGGCAAGGTGTGGGCATCGCGCTATTGTGTGCGTTTGGTGTTCTTCCCAAGGAGGAAAGACTACAAACAGGCTTGCAGGATTTCTTGATATGTATCGAAATGGCAATTGCAGCTGTTGCACATATGTTTGTCTTTTCAACAGCACCATACCATTACATTTGGGCTTACGAGTATGGGAAGGTCACCACAGAAACAACCAAGACTAAACTGAAGTTGGAGGAAAGTGACACCCCAACTGTGTTCGAAAGAAAAGAAACTCAGGTCAAAGCTCCCGGAACAAGTGTCACCGAGAGCGTTCAGGACATTGTTGTTGACGGTGGTCAGCGCGTGGTCAAGGATGTTGTCTTGACCATAAATCAAGCAATAGGGCCTGTGGAAAAGGGTGTGGAAAAGGGTGTGACAAAGATCCATGAGACATTCCACCAAAGAACAGAGGGCTCAGAATCAGGAGACCAAGAAATTGATGAACAAGTTGAAATGAATCTTACCAGAGAGACTCATATGGATCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0016020 GO:0016021 GO:0031224 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

418

Amino Acids

47.34

Weight (kDa)

6.08

Isoelectric Point (pI)

39.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012223)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23070
fragaria_vesca FvH4_1g08970 FvH4_1g08970 FvH4_1g08970 FvH4_1g08970 FvH4_1g08970 FvH4_1g08970
malus_domestica MD02G1095200.v1.1
prunus_persica Prupe.7G196000_v2.0.a1
pyrus_communis pycom02g07520
rosa_chinensis RchiOBHm_Chr2g0095421
rosa_laevigata RLG00000016564
rosa_multiflora Rmu_co8230917.1_g000001 Rmu_sc0010847.1_g000005
rosa_samantha Rh2AG098900 Rh2BG100100 Rh2CG102100 Rh2DG099700
rosa_wichuraiana Rw2G007470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 184
AccB1I GGYRCC 1 cut(s) 184
AccB7I CCANNNNNTGG 1 cut(s) 741
AccII CGCG 2 cut(s) 761, 1068
AclWI GGATC 2 cut(s) 1141, 1241
AcsI RAATTY 2 cut(s) 482, 572
AcuI CTGAAG 3 cut(s) 530, 604, 971
AdeI CACNNNGTG 1 cut(s) 741
AfaI GTAC 2 cut(s) 186, 495
AfiI CCNNNNNNNGG 2 cut(s) 631, 741
AgsI TTSAA 7 cut(s) 122, 347, 577, 616, 683, 879, 1217
AluBI AGCT 7 cut(s) 59, 86, 297, 340, 714, 854, 1010
AluI AGCT 7 cut(s) 59, 86, 297, 340, 714, 854, 1010
Alw26I GTCTC 4 cut(s) 426, 1148, 1185, 1229
AlwI GGATC 2 cut(s) 1141, 1241
Ama87I CYCGRG 1 cut(s) 455
AoxI GGCC 1 cut(s) 1109
ApeKI GCWGC 2 cut(s) 83, 851
ApoI RAATTY 2 cut(s) 482, 572
Asp700I GAANNNNTTC 1 cut(s) 678
Asp718I GGTACC 1 cut(s) 184
AspLEI GCGC 3 cut(s) 94, 763, 1068
AspS9I GGNCC 2 cut(s) 97, 1109
AsuC2I CCSGG 1 cut(s) 1014
AsuHPI GGTGA 3 cut(s) 332, 916, 1018
AsuII TTCGAA 1 cut(s) 984
AvaI CYCGRG 1 cut(s) 455
AvaII GGWCC 1 cut(s) 97
BamHI GGATCC 1 cut(s) 1246
BanI GGYRCC 1 cut(s) 184
BanII GRGCYC 1 cut(s) 1181
BbsI GAAGAC 1 cut(s) 518
BbvCI CCTCAGC 1 cut(s) 19
BbvI GCAGC 2 cut(s) 95, 863
BcnI CCSGG 1 cut(s) 1014
BcoDI GTCTC 4 cut(s) 426, 1148, 1185, 1229
BfmI CTRYAG 1 cut(s) 171
BfoI RGCGCY 1 cut(s) 95
BglII AGATCT 2 cut(s) 43, 546
BisI GCNGC 2 cut(s) 84, 852
BlsI GCNGC 2 cut(s) 85, 853
Bme1390I CCNGG 1 cut(s) 1014
Bme18I GGWCC 1 cut(s) 97
BmeT110I CYCGRG 1 cut(s) 455
BmgT120I GGNCC 2 cut(s) 97, 1109
BmiI GGNNCC 3 cut(s) 73, 186, 1248
BmrFI CCNGG 1 cut(s) 1014
BmsI GCATC 2 cut(s) 14, 765
BoxI GACNNNNGTC 1 cut(s) 1059
BpiI GAAGAC 1 cut(s) 518
Bpu10I CCTNAGC 1 cut(s) 19
Bpu14I TTCGAA 1 cut(s) 984
BpuMI CCSGG 1 cut(s) 1014
BsaBI GATNNNNATC 2 cut(s) 399, 833
BsaI GGTCTC 2 cut(s) 426, 1185
BsaJI CCNNGG 1 cut(s) 789
Bsc4I CCNNNNNNNGG 2 cut(s) 631, 741
Bse8I GATNNNNATC 2 cut(s) 399, 833
BseDI CCNNGG 1 cut(s) 789
BseGI GGATG 1 cut(s) 1084
BseJI GATNNNNATC 2 cut(s) 399, 833
BseLI CCNNNNNNNGG 2 cut(s) 631, 741
BseMII CTCAG 5 cut(s) 33, 142, 192, 1013, 1194
BseXI GCAGC 2 cut(s) 95, 863
BsgI GTGCAG 1 cut(s) 671
Bsh1236I CGCG 2 cut(s) 761, 1068
BshFI GGCC 1 cut(s) 1111
BshNI GGYRCC 1 cut(s) 184
BsiHKCI CYCGRG 1 cut(s) 455
BsiSI CCGG 1 cut(s) 1014
BslI CCNNNNNNNGG 2 cut(s) 631, 741
BsmAI GTCTC 4 cut(s) 426, 1148, 1185, 1229
BsmI GAATGC 1 cut(s) 524
BsnI GGCC 1 cut(s) 1111
Bso31I GGTCTC 2 cut(s) 426, 1185
BsoBI CYCGRG 1 cut(s) 455
Bsp119I TTCGAA 1 cut(s) 984
Bsp1286I GDGCHC 1 cut(s) 1181
Bsp1407I TGTACA 1 cut(s) 493
Bsp143I GATC 4 cut(s) 43, 546, 1146, 1246
BspANI GGCC 1 cut(s) 1111
BspCNI CTCAG 5 cut(s) 32, 141, 193, 1012, 1193
BspFNI CGCG 2 cut(s) 761, 1068
BspHI TCATGA 1 cut(s) 670
BspLI GGNNCC 3 cut(s) 73, 186, 1248
BspPI GGATC 2 cut(s) 1141, 1241
BspT104I TTCGAA 1 cut(s) 984
BspT107I GGYRCC 1 cut(s) 184
BspTNI GGTCTC 2 cut(s) 426, 1185
BsrGI TGTACA 1 cut(s) 493
BssECI CCNNGG 1 cut(s) 789
BssMI GATC 4 cut(s) 43, 546, 1146, 1246
BssT1I CCWWGG 1 cut(s) 789
Bst4CI ACNGT 3 cut(s) 517, 979, 1058
Bst6I CTCTTC 2 cut(s) 322, 429
BstAPI GCANNNNNTGC 1 cut(s) 857
BstAUI TGTACA 1 cut(s) 493
BstBI TTCGAA 1 cut(s) 984
BstC8I GCNNGC 2 cut(s) 76, 815
BstDEI CTNAG 7 cut(s) 19, 128, 201, 254, 529, 999, 1180
BstEII GGTNACC 1 cut(s) 922
BstF5I GGATG 1 cut(s) 1084
BstFNI CGCG 2 cut(s) 761, 1068
BstH2I RGCGCY 1 cut(s) 95
BstHHI GCGC 3 cut(s) 94, 763, 1068
BstKTI GATC 4 cut(s) 46, 549, 1149, 1249
BstMAI GTCTC 4 cut(s) 426, 1148, 1185, 1229
BstMBI GATC 4 cut(s) 43, 546, 1146, 1246
BstMWI GCNNNNNNNGC 5 cut(s) 80, 89, 530, 851, 857
BstNSI RCATGY 1 cut(s) 246
BstPAI GACNNNNGTC 1 cut(s) 1059
BstPI GGTNACC 1 cut(s) 922
BstSCI CCNGG 1 cut(s) 1012
BstSFI CTRYAG 1 cut(s) 171
BstUI CGCG 2 cut(s) 761, 1068
BstV1I GCAGC 2 cut(s) 95, 863
BstV2I GAAGAC 1 cut(s) 518
BstX2I RGATCY 4 cut(s) 43, 546, 1146, 1246
BstYI RGATCY 4 cut(s) 43, 546, 1146, 1246
BsuRI GGCC 1 cut(s) 1111
BtgZI GCGATG 1 cut(s) 742
BtsCI GGATG 1 cut(s) 1084
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 2 cut(s) 76, 815
CciI TCATGA 1 cut(s) 670
CfoI GCGC 3 cut(s) 94, 763, 1068
Cfr13I GGNCC 2 cut(s) 97, 1109
Csp6I GTAC 2 cut(s) 185, 494
CviAII CATG 7 cut(s) 26, 181, 243, 447, 601, 671, 1151
CviQI GTAC 2 cut(s) 185, 494
DdeI CTNAG 7 cut(s) 19, 128, 201, 254, 529, 999, 1180
DpnI GATC 4 cut(s) 45, 548, 1148, 1248
DpnII GATC 4 cut(s) 43, 546, 1146, 1246
DraIII CACNNNGTG 1 cut(s) 741
Eam1104I CTCTTC 2 cut(s) 322, 429
EarI CTCTTC 2 cut(s) 322, 429
Eco130I CCWWGG 1 cut(s) 789
Eco24I GRGCYC 1 cut(s) 1181
Eco31I GGTCTC 2 cut(s) 426, 1185
Eco47I GGWCC 1 cut(s) 97
Eco57I CTGAAG 3 cut(s) 530, 604, 971
Eco88I CYCGRG 1 cut(s) 455
Eco91I GGTNACC 1 cut(s) 922
EcoO109I RGGNCCY 1 cut(s) 1109
EcoO65I GGTNACC 1 cut(s) 922
EcoT14I CCWWGG 1 cut(s) 789
EcoT38I GRGCYC 1 cut(s) 1181
ErhI CCWWGG 1 cut(s) 789
FaeI CATG 7 cut(s) 29, 184, 246, 450, 604, 674, 1154
FatI CATG 7 cut(s) 25, 180, 242, 446, 600, 670, 1150
FauNDI CATATG 2 cut(s) 864, 1242
Fnu4HI GCNGC 2 cut(s) 84, 852
FokI GGATG 1 cut(s) 1091
FriOI GRGCYC 1 cut(s) 1181
Fsp4HI GCNGC 2 cut(s) 84, 852
GlaI GCGC 3 cut(s) 93, 762, 1067
GluI GCNGC 2 cut(s) 84, 852
HaeII RGCGCY 1 cut(s) 95
HaeIII GGCC 1 cut(s) 1111
HapII CCGG 1 cut(s) 1014
HhaI GCGC 3 cut(s) 94, 763, 1068
Hin1II CATG 7 cut(s) 29, 184, 246, 450, 604, 674, 1154
Hin6I GCGC 3 cut(s) 92, 761, 1066
HinP1I GCGC 3 cut(s) 92, 761, 1066
HincII GTYRAC 1 cut(s) 1054
HindII GTYRAC 1 cut(s) 1054
HinfI GANTC 7 cut(s) 203, 223, 400, 505, 1184, 1222, 1237
HpaII CCGG 1 cut(s) 1014
HphI GGTGA 3 cut(s) 332, 916, 1018
Hpy166II GTNNAC 1 cut(s) 1054
Hpy188I TCNGA 3 cut(s) 131, 510, 1183
Hpy188III TCNNGA 7 cut(s) 357, 457, 671, 826, 1040, 1087, 1188
Hpy8I GTNNAC 1 cut(s) 1054
HpyAV CCTTC 2 cut(s) 380, 913
HpyCH4III ACNGT 3 cut(s) 517, 979, 1058
HpyCH4V TGCA 8 cut(s) 83, 242, 524, 652, 701, 817, 851, 860
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 89, 530, 851, 857
HpyF3I CTNAG 7 cut(s) 19, 128, 201, 254, 529, 999, 1180
Hsp92II CATG 7 cut(s) 29, 184, 246, 450, 604, 674, 1154
HspAI GCGC 3 cut(s) 92, 761, 1066
KpnI GGTACC 1 cut(s) 188
Kzo9I GATC 4 cut(s) 43, 546, 1146, 1246
LmnI GCTCC 2 cut(s) 71, 1015
Lsp1109I GCAGC 2 cut(s) 95, 863
LweI GCATC 2 cut(s) 14, 765
MaeIII GTNAC 7 cut(s) 245, 428, 664, 922, 965, 1024, 1138
MalI GATC 4 cut(s) 45, 548, 1148, 1248
MboI GATC 4 cut(s) 43, 546, 1146, 1246
MboII GAAGA 5 cut(s) 339, 416, 427, 523, 776
MfeI CAATTG 1 cut(s) 846
MflI RGATCY 4 cut(s) 43, 546, 1146, 1246
MhlI GDGCHC 1 cut(s) 1181
MluCI AATT 6 cut(s) 207, 259, 482, 572, 846, 1200
MlyI GAGTC 2 cut(s) 212, 1231
MmeI TCCRAC 2 cut(s) 522, 936
MnlI CCTC 6 cut(s) 28, 110, 311, 787, 952, 1168
MroXI GAANNNNTTC 1 cut(s) 678
MseI TTAA 2 cut(s) 717, 1252
MspA1I CMGCKG 3 cut(s) 59, 86, 854
MspI CCGG 1 cut(s) 1014
MspR9I CCNGG 1 cut(s) 1014
MunI CAATTG 1 cut(s) 846
Mva1269I GAATGC 1 cut(s) 524
MvnI CGCG 2 cut(s) 761, 1068
MwoI GCNNNNNNNGC 5 cut(s) 80, 89, 530, 851, 857
NciI CCSGG 1 cut(s) 1014
NdeI CATATG 2 cut(s) 864, 1242
NdeII GATC 4 cut(s) 43, 546, 1146, 1246
NlaIII CATG 7 cut(s) 29, 184, 246, 450, 604, 674, 1154
NlaIV GGNNCC 3 cut(s) 73, 186, 1248
NmuCI GTSAC 5 cut(s) 245, 922, 965, 1024, 1138
NspI RCATGY 1 cut(s) 246
NspV TTCGAA 1 cut(s) 984
PagI TCATGA 1 cut(s) 670
PctI GAATGC 1 cut(s) 524
PdmI GAANNNNTTC 1 cut(s) 678
PfeI GAWTC 5 cut(s) 223, 400, 505, 1184, 1222
PflMI CCANNNNNTGG 1 cut(s) 741
PfoI TCCNGGA 1 cut(s) 1012
PkrI GCNGC 2 cut(s) 85, 853
PleI GAGTC 2 cut(s) 211, 1231
PpsI GAGTC 2 cut(s) 211, 1231
PshAI GACNNNNGTC 1 cut(s) 1059
PspEI GGTNACC 1 cut(s) 922
PspN4I GGNNCC 3 cut(s) 73, 186, 1248
PspPI GGNCC 2 cut(s) 97, 1109
PsuI RGATCY 4 cut(s) 43, 546, 1146, 1246
PvuII CAGCTG 3 cut(s) 59, 86, 854
RsaI GTAC 2 cut(s) 186, 495
RsaNI GTAC 2 cut(s) 185, 494
SaqAI TTAA 2 cut(s) 717, 1252
SatI GCNGC 2 cut(s) 84, 852
Sau3AI GATC 4 cut(s) 43, 546, 1146, 1246
Sau96I GGNCC 2 cut(s) 97, 1109
SchI GAGTC 2 cut(s) 212, 1231
ScrFI CCNGG 1 cut(s) 1014
SduI GDGCHC 1 cut(s) 1181
SfaNI GCATC 2 cut(s) 14, 765
SfcI CTRYAG 1 cut(s) 171
SfuI TTCGAA 1 cut(s) 984
SinI GGWCC 1 cut(s) 97
Sse9I AATT 6 cut(s) 207, 259, 482, 572, 846, 1200
StyD4I CCNGG 1 cut(s) 1012
StyI CCWWGG 1 cut(s) 789
TaaI ACNGT 3 cut(s) 517, 979, 1058
TaqI TCGA 2 cut(s) 837, 984
TasI AATT 6 cut(s) 207, 259, 482, 572, 846, 1200
TatI WGTACW 1 cut(s) 493
TfiI GAWTC 5 cut(s) 223, 400, 505, 1184, 1222
Tru1I TTAA 2 cut(s) 717, 1252
Tru9I TTAA 2 cut(s) 717, 1252
TscAI CASTG 1 cut(s) 154
TseFI GTSAC 5 cut(s) 245, 922, 965, 1024, 1138
TseI GCWGC 2 cut(s) 83, 851
Tsp45I GTSAC 5 cut(s) 245, 922, 965, 1024, 1138
TspDTI ATGAA 7 cut(s) 42, 169, 282, 687, 697, 1221, 1235
TspRI CASTG 1 cut(s) 154
Van91I CCANNNNNTGG 1 cut(s) 741
VpaK11BI GGWCC 1 cut(s) 97
XapI RAATTY 2 cut(s) 482, 572
XceI RCATGY 1 cut(s) 246
XmnI GAANNNNTTC 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.