FvH4_1g08970

Transmembrane protein 184 homolog DDB_G0279555

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012223
Physical Location & Seq
Forward (+)
4755895 .. 4759131
3237 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g08970.t3

Sequence Viewer

Length: 1122 bp
ATGGTACCTGTTTATGCGACTTGTTCGATTATATCCTTGTGGAAGCCAAAGCTGTCTGTACCATGTGACATTCTGAGAAACTGTTATGAAGCGTTTGCCTTGTATTCTTTTGGAAGCTACTTGGTTGCTTGTCTGGGAGGTGAGAGCAGAGTAGTAAAATTACTTGAAAATCAATCTGGAAAGCTCCTAAACGAAGCATTGGTAGAAGGAGAAGATGAGAATATCAGGAAACCACACTGGTCTCTTCGCGACTTCTTCTTCCGACCAACTATTATTGGGAAATATTTGTTCACAATAGTGAAATTCGGTCTTGTTCAATATATGATTCTGAAGACAGTGTGTGCATTCCTTGCACTGGTGTTGGAAATCTTTGGCGTCTATGGAAATGGGGAATTCAAGTTGTACTACGGGTATCCGTACATCACGATAGTACTGAATTTCAGCCAGATGTGGGCATTGTATTGCCTTGTGAAATTCTATAATGCGACTCATGAAAGACTTCAACCAATAAGGCCACTTGCAAAGTTTATCAGCTTTAAGGCTATTGTGTTTGCAACTTGGTGGCAAGGTGTGGGTATTGCACTGTTGTGTTCTTTTGGTGTTCTTCCCAACCAGGAAAAACTACAAACAGGGTTGCAGGATTTCTTGATTTGTATAGAAATGGCAATTGCAGCTGTTGCACATGTGTTTGTCTTTTCGGCAGAACCTTATCATTACATTCCATTGACTTCTGGGTATGAGAAGATCACCACTACTGAAACAACCAGTGAGGAAGTAGTGAAGTTGGAGGAAGGTGACAGTACACAAGCTGTGGTTGAAACAAAAGAAACTCAGGTCAAGGCTCCTGGAACAAGTGTGAGAGAGAGTGTTCAGGACATAGTTATGGAAGGTGGTCATCATGTTGTCAAGGATGTTGTGTTGACCATAAATCAAGCAATGGGGCCAGTGGAGAAGGGCGTGACGAAGGGTGTGACAAAGATACAAGAAACCTTCCACCAAAGATCAGATGATCAAGACAATAAGTCGGAGGTATCAGTTGAGGAGACTTTTGAGGTGACTCTTTCCGATGAAGAAACACACATGGACCTCGAGAAAAGTACTATATCTGAAAGAAGAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0016020 GO:0016021 GO:0031224 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

374

Amino Acids

42.14

Weight (kDa)

5.33

Isoelectric Point (pI)

34.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 24 - 287 2.9e-85 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012223)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23070
fragaria_vesca FvH4_1g08970 FvH4_1g08970 FvH4_1g08970 FvH4_1g08970 FvH4_1g08970 FvH4_1g08970
malus_domestica MD02G1095200.v1.1
prunus_persica Prupe.7G196000_v2.0.a1
pyrus_communis pycom02g07520
rosa_chinensis RchiOBHm_Chr2g0095421
rosa_laevigata RLG00000016564
rosa_multiflora Rmu_co8230917.1_g000001 Rmu_sc0010847.1_g000005
rosa_samantha Rh2AG098900 Rh2BG100100 Rh2CG102100 Rh2DG099700
rosa_wichuraiana Rw2G007470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 4
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 249
AcsI RAATTY 4 cut(s) 302, 392, 436, 473
AcuI CTGAAG 1 cut(s) 350
AcyI GRCGYC 1 cut(s) 375
AfaI GTAC 7 cut(s) 6, 60, 404, 419, 432, 802, 1099
AfiI CCNNNNNNNGG 2 cut(s) 355, 451
AflIII ACRYGT 1 cut(s) 682
AgsI TTSAA 5 cut(s) 167, 317, 397, 503, 818
AhdI GACNNNNNGTC 1 cut(s) 1021
AjnI CCWGG 2 cut(s) 612, 844
AleI CACNNNNGTG 2 cut(s) 296, 586
AluBI AGCT 6 cut(s) 52, 117, 184, 534, 674, 809
AluI AGCT 6 cut(s) 52, 117, 184, 534, 674, 809
Alw26I GTCTC 2 cut(s) 246, 1037
Ama87I CYCGRG 1 cut(s) 1088
AoxI GGCC 2 cut(s) 512, 941
ApeKI GCWGC 1 cut(s) 671
ApoI RAATTY 4 cut(s) 302, 392, 436, 473
Asp700I GAANNNNTTC 1 cut(s) 498
Asp718I GGTACC 1 cut(s) 4
AspS9I GGNCC 2 cut(s) 941, 1084
AsuHPI GGTGA 4 cut(s) 152, 739, 806, 1066
AvaI CYCGRG 1 cut(s) 1088
AvaII GGWCC 1 cut(s) 1084
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 338
BbvI GCAGC 1 cut(s) 683
BciT130I CCWGG 2 cut(s) 614, 846
BciVI GTATCC 1 cut(s) 423
BclI TGATCA 1 cut(s) 1009
BcoDI GTCTC 2 cut(s) 246, 1037
BfuI GTATCC 1 cut(s) 423
BisI GCNGC 1 cut(s) 672
BlsI GCNGC 1 cut(s) 673
BmcAI AGTACT 2 cut(s) 432, 1099
Bme1390I CCNGG 2 cut(s) 614, 846
Bme18I GGWCC 1 cut(s) 1084
BmeRI GACNNNNNGTC 1 cut(s) 1021
BmeT110I CYCGRG 1 cut(s) 1088
BmgT120I GGNCC 2 cut(s) 941, 1084
BmiI GGNNCC 3 cut(s) 6, 843, 942
BmrFI CCNGG 2 cut(s) 614, 846
BpiI GAAGAC 1 cut(s) 338
BsaHI GRCGYC 1 cut(s) 375
BsaI GGTCTC 1 cut(s) 246
Bsc4I CCNNNNNNNGG 2 cut(s) 355, 451
Bse1I ACTGG 4 cut(s) 242, 360, 765, 944
Bse3DI GCAATG 1 cut(s) 942
BseBI CCWGG 2 cut(s) 614, 846
BseGI GGATG 1 cut(s) 916
BseLI CCNNNNNNNGG 2 cut(s) 355, 451
BseMI GCAATG 1 cut(s) 942
BseMII CTCAG 2 cut(s) 65, 845
BseNI ACTGG 4 cut(s) 242, 360, 765, 944
BseRI GAGGAG 1 cut(s) 1055
BseXI GCAGC 1 cut(s) 683
Bsh1236I CGCG 1 cut(s) 249
BshFI GGCC 2 cut(s) 514, 943
BshNI GGYRCC 1 cut(s) 4
BsiHKCI CYCGRG 1 cut(s) 1088
BslI CCNNNNNNNGG 2 cut(s) 355, 451
BsmAI GTCTC 2 cut(s) 246, 1037
BsmI GAATGC 1 cut(s) 344
BsnI GGCC 2 cut(s) 514, 943
Bso31I GGTCTC 1 cut(s) 246
BsoBI CYCGRG 1 cut(s) 1088
Bsp143I GATC 3 cut(s) 744, 1001, 1009
Bsp68I TCGCGA 1 cut(s) 249
BspANI GGCC 2 cut(s) 514, 943
BspCNI CTCAG 2 cut(s) 66, 844
BspFNI CGCG 1 cut(s) 249
BspHI TCATGA 1 cut(s) 490
BspLI GGNNCC 3 cut(s) 6, 843, 942
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 246
BsrDI GCAATG 1 cut(s) 942
BsrI ACTGG 4 cut(s) 242, 360, 765, 944
BssMI GATC 3 cut(s) 744, 1001, 1009
BssNI GRCGYC 1 cut(s) 375
Bst2UI CCWGG 2 cut(s) 614, 846
Bst4CI ACNGT 4 cut(s) 83, 337, 585, 800
Bst6I CTCTTC 1 cut(s) 249
BstACI GRCGYC 1 cut(s) 375
BstAPI GCANNNNNTGC 2 cut(s) 350, 677
BstDEI CTNAG 2 cut(s) 74, 831
BstF5I GGATG 1 cut(s) 916
BstFNI CGCG 1 cut(s) 249
BstKTI GATC 3 cut(s) 747, 1004, 1012
BstMAI GTCTC 2 cut(s) 246, 1037
BstMBI GATC 3 cut(s) 744, 1001, 1009
BstMWI GCNNNNNNNGC 3 cut(s) 350, 671, 677
BstNI CCWGG 2 cut(s) 614, 846
BstNSI RCATGY 1 cut(s) 686
BstSCI CCNGG 2 cut(s) 612, 844
BstUI CGCG 1 cut(s) 249
BstV1I GCAGC 1 cut(s) 683
BstV2I GAAGAC 1 cut(s) 338
BsuI GTATCC 1 cut(s) 423
BsuRI GGCC 2 cut(s) 514, 943
BtsCI GGATG 1 cut(s) 916
BtsIMutI CAGTG 6 cut(s) 235, 342, 353, 581, 772, 951
BtuMI TCGCGA 1 cut(s) 249
CciI TCATGA 1 cut(s) 490
Cfr13I GGNCC 2 cut(s) 941, 1084
CseI GACGC 1 cut(s) 364
Csp6I GTAC 7 cut(s) 5, 59, 403, 418, 431, 801, 1098
CviAII CATG 5 cut(s) 63, 491, 683, 899, 1081
CviQI GTAC 7 cut(s) 5, 59, 403, 418, 431, 801, 1098
DdeI CTNAG 2 cut(s) 74, 831
DpnI GATC 3 cut(s) 746, 1003, 1011
DpnII GATC 3 cut(s) 744, 1001, 1009
DriI GACNNNNNGTC 1 cut(s) 1021
Eam1104I CTCTTC 1 cut(s) 249
Eam1105I GACNNNNNGTC 1 cut(s) 1021
EarI CTCTTC 1 cut(s) 249
Eco31I GGTCTC 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 1084
Eco57I CTGAAG 1 cut(s) 350
Eco88I CYCGRG 1 cut(s) 1088
EcoRI GAATTC 1 cut(s) 392
EcoRII CCWGG 2 cut(s) 612, 844
FaeI CATG 5 cut(s) 66, 494, 686, 902, 1084
FatI CATG 5 cut(s) 62, 490, 682, 898, 1080
FbaI TGATCA 1 cut(s) 1009
Fnu4HI GCNGC 1 cut(s) 672
FokI GGATG 1 cut(s) 923
Fsp4HI GCNGC 1 cut(s) 672
GluI GCNGC 1 cut(s) 672
HaeIII GGCC 2 cut(s) 514, 943
HgaI GACGC 1 cut(s) 364
Hin1I GRCGYC 1 cut(s) 375
Hin1II CATG 5 cut(s) 66, 494, 686, 902, 1084
HincII GTYRAC 1 cut(s) 921
HindII GTYRAC 1 cut(s) 921
HinfI GANTC 3 cut(s) 325, 487, 1057
HphI GGTGA 4 cut(s) 152, 739, 806, 1066
Hpy166II GTNNAC 3 cut(s) 291, 803, 921
Hpy188I TCNGA 7 cut(s) 75, 263, 330, 1006, 1027, 1066, 1108
Hpy188III TCNNGA 9 cut(s) 177, 226, 248, 424, 491, 646, 872, 1013, 1090
Hpy8I GTNNAC 3 cut(s) 291, 803, 921
HpyAV CCTTC 6 cut(s) 200, 785, 881, 946, 958, 1000
HpyCH4III ACNGT 4 cut(s) 83, 337, 585, 800
HpyCH4V TGCA 8 cut(s) 344, 353, 521, 554, 581, 637, 671, 680
HpyF10VI GCNNNNNNNGC 3 cut(s) 350, 671, 677
HpyF3I CTNAG 2 cut(s) 74, 831
Hsp92I GRCGYC 1 cut(s) 375
Hsp92II CATG 5 cut(s) 66, 494, 686, 902, 1084
KpnI GGTACC 1 cut(s) 8
Ksp22I TGATCA 1 cut(s) 1009
Kzo9I GATC 3 cut(s) 744, 1001, 1009
LmnI GCTCC 2 cut(s) 189, 847
Lsp1109I GCAGC 1 cut(s) 683
MaeIII GTNAC 5 cut(s) 65, 794, 958, 970, 1054
MalI GATC 3 cut(s) 746, 1003, 1011
MboI GATC 3 cut(s) 744, 1001, 1009
MboII GAAGA 8 cut(s) 224, 236, 247, 250, 343, 596, 754, 1082
MfeI CAATTG 1 cut(s) 666
MluCI AATT 6 cut(s) 158, 302, 392, 436, 473, 666
MlyI GAGTC 2 cut(s) 481, 1051
MmeI TCCRAC 4 cut(s) 286, 342, 765, 1005
MnlI CCTC 7 cut(s) 131, 763, 781, 1021, 1033, 1045, 1097
MroXI GAANNNNTTC 1 cut(s) 498
MseI TTAA 1 cut(s) 537
MslI CAYNNNNRTG 3 cut(s) 296, 586, 881
MspA1I CMGCKG 1 cut(s) 674
MspR9I CCNGG 2 cut(s) 614, 846
MunI CAATTG 1 cut(s) 666
Mva1269I GAATGC 1 cut(s) 344
MvaI CCWGG 2 cut(s) 614, 846
MvnI CGCG 1 cut(s) 249
MwoI GCNNNNNNNGC 3 cut(s) 350, 671, 677
NdeII GATC 3 cut(s) 744, 1001, 1009
NlaIII CATG 5 cut(s) 66, 494, 686, 902, 1084
NlaIV GGNNCC 3 cut(s) 6, 843, 942
NmuCI GTSAC 5 cut(s) 65, 794, 958, 970, 1054
NruI TCGCGA 1 cut(s) 249
NspI RCATGY 1 cut(s) 686
OliI CACNNNNGTG 2 cut(s) 296, 586
PaeR7I CTCGAG 1 cut(s) 1088
PagI TCATGA 1 cut(s) 490
PciI ACATGT 1 cut(s) 682
PctI GAATGC 1 cut(s) 344
PdmI GAANNNNTTC 1 cut(s) 498
PfeI GAWTC 1 cut(s) 325
PfoI TCCNGGA 1 cut(s) 844
PkrI GCNGC 1 cut(s) 673
PleI GAGTC 2 cut(s) 481, 1051
PpsI GAGTC 2 cut(s) 481, 1051
PscI ACATGT 1 cut(s) 682
Psp6I CCWGG 2 cut(s) 612, 844
PspGI CCWGG 2 cut(s) 612, 844
PspN4I GGNNCC 3 cut(s) 6, 843, 942
PspPI GGNCC 2 cut(s) 941, 1084
PvuII CAGCTG 1 cut(s) 674
RruI TCGCGA 1 cut(s) 249
RsaI GTAC 7 cut(s) 6, 60, 404, 419, 432, 802, 1099
RsaNI GTAC 7 cut(s) 5, 59, 403, 418, 431, 801, 1098
RseI CAYNNNNRTG 3 cut(s) 296, 586, 881
SaqAI TTAA 1 cut(s) 537
SatI GCNGC 1 cut(s) 672
Sau3AI GATC 3 cut(s) 744, 1001, 1009
Sau96I GGNCC 2 cut(s) 941, 1084
ScaI AGTACT 2 cut(s) 432, 1099
SchI GAGTC 2 cut(s) 481, 1051
ScrFI CCNGG 2 cut(s) 614, 846
Sfr274I CTCGAG 1 cut(s) 1088
SinI GGWCC 1 cut(s) 1084
SlaI CTCGAG 1 cut(s) 1088
SmiMI CAYNNNNRTG 3 cut(s) 296, 586, 881
SmlI CTYRAG 1 cut(s) 1088
SmoI CTYRAG 1 cut(s) 1088
Sse9I AATT 6 cut(s) 158, 302, 392, 436, 473, 666
SspI AATATT 1 cut(s) 284
StyD4I CCNGG 2 cut(s) 612, 844
TaaI ACNGT 4 cut(s) 83, 337, 585, 800
TaqI TCGA 2 cut(s) 26, 1089
TaqII GACCGA 1 cut(s) 296
TasI AATT 6 cut(s) 158, 302, 392, 436, 473, 666
TatI WGTACW 4 cut(s) 402, 430, 800, 1097
TfiI GAWTC 1 cut(s) 325
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TscAI CASTG 6 cut(s) 242, 342, 360, 588, 772, 951
TseFI GTSAC 5 cut(s) 65, 794, 958, 970, 1054
TseI GCWGC 1 cut(s) 671
Tsp45I GTSAC 5 cut(s) 65, 794, 958, 970, 1054
TspDTI ATGAA 3 cut(s) 102, 507, 1083
TspGWI ACGGA 1 cut(s) 405
TspRI CASTG 6 cut(s) 242, 342, 360, 588, 772, 951
VpaK11BI GGWCC 1 cut(s) 1084
XapI RAATTY 4 cut(s) 302, 392, 436, 473
XceI RCATGY 1 cut(s) 686
XhoI CTCGAG 1 cut(s) 1088
XmnI GAANNNNTTC 1 cut(s) 498
ZrmI AGTACT 2 cut(s) 432, 1099
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.